Wall clock time and date at job start Mon Mar 30 2020 06:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47906 * 110.99826 * 2 1 4 4 C 1.54590 * 102.63600 * 265.48467 * 3 2 1 5 5 C 1.51584 * 102.88373 * 334.38873 * 4 3 2 6 6 C 1.37927 * 131.47434 * 196.28368 * 5 4 3 7 7 C 1.38864 * 120.01984 * 179.88926 * 6 5 4 8 8 N 1.40008 * 120.13004 * 179.62964 * 7 6 5 9 9 C 1.46499 * 119.99846 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47104 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46839 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47020 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99707 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00432 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99873 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00249 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47197 * 89.99974 * 16 14 12 18 18 H 1.48501 * 109.47107 * 210.00080 * 16 14 12 19 19 H 1.48506 * 109.47074 * 329.99832 * 16 14 12 20 20 C 1.38874 * 119.73416 * 359.35879 * 7 6 5 21 21 C 1.37886 * 120.17988 * 0.70892 * 20 7 6 22 22 C 1.38922 * 107.97652 * 16.05566 * 5 4 3 23 23 H 1.09006 * 109.47611 * 59.99616 * 1 2 3 24 24 H 1.08999 * 109.47683 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47036 * 299.99469 * 1 2 3 26 26 H 1.09004 * 110.77226 * 147.19847 * 3 2 1 27 27 H 1.09004 * 110.93980 * 23.84519 * 3 2 1 28 28 H 1.09006 * 110.72823 * 216.04073 * 4 3 2 29 29 H 1.08994 * 110.88390 * 92.81524 * 4 3 2 30 30 H 1.08002 * 119.98634 * 359.60510 * 6 5 4 31 31 H 0.96999 * 120.00061 * 359.97438 * 8 7 6 32 32 H 1.09004 * 109.47089 * 299.99850 * 9 8 7 33 33 H 1.08997 * 109.47226 * 59.99758 * 9 8 7 34 34 H 1.08998 * 109.46763 * 299.99523 * 10 9 8 35 35 H 1.08998 * 109.46846 * 59.99472 * 10 9 8 36 36 H 1.09004 * 109.47418 * 299.99888 * 11 10 9 37 37 H 1.08998 * 109.47636 * 60.00197 * 11 10 9 38 38 H 0.96997 * 120.00639 * 180.02562 * 15 14 12 39 39 H 1.07995 * 119.91209 * 180.41993 * 20 7 6 40 40 H 1.08005 * 119.85375 * 179.74266 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 2.2310 1.6540 -1.5038 5 6 2.4318 0.2634 -2.0729 6 6 2.9604 -0.1650 -3.2726 7 6 3.0339 -1.5229 -3.5539 8 7 3.5630 -1.9601 -4.7743 9 6 3.6387 -3.3933 -5.0683 10 6 4.2520 -3.5977 -6.4551 11 6 4.3316 -5.0945 -6.7618 12 6 4.9351 -5.2958 -8.1280 13 1 5.2325 -4.4416 -8.7181 14 6 5.1075 -6.5705 -8.6245 15 7 4.7459 -7.6107 -7.9056 16 14 5.8562 -6.8200 -10.3175 17 1 7.3315 -6.9362 -10.1941 18 1 5.3107 -8.0620 -10.9218 19 1 5.5216 -5.6603 -11.1826 20 6 2.5858 -2.4455 -2.6177 21 6 2.0563 -2.0157 -1.4193 22 6 1.9720 -0.6537 -1.1361 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 2.9373 1.4348 0.5521 27 1 1.2693 2.0782 0.4116 28 1 3.1222 2.2640 -1.6521 29 1 1.3594 2.1319 -1.9509 30 1 3.3130 0.5559 -3.9953 31 1 3.8787 -1.3141 -5.4253 32 1 4.2604 -3.8853 -4.3203 33 1 2.6368 -3.8220 -5.0469 34 1 3.6305 -3.1057 -7.2032 35 1 5.2539 -3.1690 -6.4760 36 1 4.9532 -5.5862 -6.0136 37 1 3.3298 -5.5235 -6.7408 38 1 4.8675 -8.5075 -8.2547 39 1 2.6479 -3.5024 -2.8307 40 1 1.7056 -2.7377 -0.6967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757123829.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:45 Heat of formation + Delta-G solvation = 8.508657 kcal Electronic energy + Delta-G solvation = -18368.379347 eV Core-core repulsion = 15567.530823 eV Total energy + Delta-G solvation = -2800.848524 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.57321 -38.94320 -36.63411 -35.07719 -33.23985 -33.03717 -30.26592 -29.42496 -27.87437 -26.42162 -24.77919 -24.01930 -22.14881 -21.74615 -21.37680 -18.53506 -17.77685 -17.41320 -17.06673 -16.50458 -16.33932 -16.16234 -15.55823 -14.87983 -14.56033 -14.31689 -14.28762 -13.97386 -13.89093 -13.72294 -13.52565 -13.22484 -12.91606 -12.79867 -12.65562 -12.46608 -12.33828 -12.06395 -11.76384 -11.65645 -11.46701 -11.19605 -10.92942 -10.56758 -9.77757 -9.53287 -8.21562 -8.02280 -6.32659 0.46018 0.61222 1.40047 1.41104 1.52124 2.38123 2.50356 2.80473 2.94617 3.12137 3.67219 3.93151 4.12614 4.16018 4.18733 4.23137 4.29520 4.43338 4.53769 4.56955 4.60067 4.70221 4.79933 4.85839 4.96118 4.96597 4.98832 5.06812 5.11892 5.15976 5.31811 5.41423 5.48893 5.58266 5.70328 5.72385 5.82615 6.08657 6.18643 6.26980 6.49420 6.83707 6.89679 7.36788 8.90429 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.058599 B = 0.002875 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.710084 B = 9738.125512 C =10087.634774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.505 5.505 3 C 0.050 3.950 4 C -0.106 4.106 5 C -0.101 4.101 6 C -0.176 4.176 7 C 0.201 3.799 8 N -0.742 5.742 9 C 0.138 3.862 10 C -0.103 4.103 11 C 0.026 3.974 12 C -0.544 4.544 13 H 0.061 0.939 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.965 3.035 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.263 1.263 20 C -0.199 4.199 21 C -0.068 4.068 22 C 0.007 3.993 23 H 0.028 0.972 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.404 0.596 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.059 0.941 36 H -0.005 1.005 37 H -0.005 1.005 38 H 0.264 0.736 39 H 0.122 0.878 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 19.467 14.606 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.224 5.224 3 C -0.077 4.077 4 C -0.144 4.144 5 C -0.104 4.104 6 C -0.199 4.199 7 C 0.097 3.903 8 N -0.372 5.372 9 C 0.013 3.987 10 C -0.141 4.141 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.079 0.921 14 C -0.199 4.199 15 N -0.573 5.573 16 Si 0.790 3.210 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.187 1.187 20 C -0.222 4.222 21 C -0.088 4.088 22 C -0.090 4.090 23 H 0.047 0.953 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.124 0.876 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.150 0.850 31 H 0.240 0.760 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.994 18.824 15.085 25.116 hybrid contribution 0.291 -0.294 -1.823 1.869 sum -6.702 18.530 13.262 23.753 Atomic orbital electron populations 1.22523 0.85379 1.02546 1.01509 1.60375 1.08965 1.15492 1.37537 1.23247 1.01932 0.87540 0.94972 1.21740 1.03700 0.92787 0.96197 1.21026 0.99120 0.96937 0.93282 1.19929 1.08236 0.93240 0.98489 1.17911 0.93065 0.92881 0.86469 1.44775 1.69030 1.06688 1.16740 1.21215 0.99638 0.81143 0.96661 1.21560 1.00071 0.97850 0.94628 1.18921 0.95277 0.91618 0.95321 1.21683 1.41027 0.92581 1.02910 0.92053 1.25983 0.96070 0.95899 1.01941 1.70088 1.48907 0.98806 1.39521 0.85445 0.78616 0.77832 0.79146 1.19786 1.20784 1.18711 1.20573 1.07446 0.99189 0.95000 1.20333 0.98672 0.93687 0.96119 1.19466 1.04730 0.93374 0.91470 0.95335 0.91775 0.89057 0.89354 0.87564 0.88415 0.89225 0.85049 0.76012 0.93152 0.93121 0.92248 0.92247 0.98683 0.98662 0.92725 0.86029 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.29 127.69 1.19 1.62 16 2 N -0.51 -10.32 5.34 -713.12 -3.81 -14.12 16 3 C 0.05 0.74 6.99 86.65 0.61 1.34 16 4 C -0.11 -1.69 6.97 30.67 0.21 -1.48 16 5 C -0.10 -2.35 6.22 -19.49 -0.12 -2.48 16 6 C -0.18 -4.41 9.89 22.35 0.22 -4.19 16 7 C 0.20 5.74 6.66 38.14 0.25 5.99 16 8 N -0.74 -21.53 5.75 -339.19 -1.95 -23.48 16 9 C 0.14 4.68 4.92 86.38 0.42 5.10 16 10 C -0.10 -4.07 5.27 30.59 0.16 -3.91 16 11 C 0.03 1.36 4.97 29.85 0.15 1.51 16 12 C -0.54 -30.69 9.11 25.60 0.23 -30.45 16 13 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 14 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 15 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 16 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 C -0.20 -5.75 9.30 22.34 0.21 -5.54 16 21 C -0.07 -1.80 10.06 22.46 0.23 -1.57 16 22 C 0.01 0.16 5.60 38.21 0.21 0.38 16 23 H 0.03 0.46 8.14 -2.38 -0.02 0.44 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.09 1.05 8.11 -2.38 -0.02 1.04 16 26 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.11 1.02 7.77 -2.39 -0.02 1.00 16 28 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.13 2.80 8.06 -2.91 -0.02 2.77 16 31 H 0.40 10.36 8.49 -92.71 -0.79 9.58 16 32 H 0.05 1.76 7.94 -2.39 -0.02 1.74 16 33 H 0.05 1.76 7.97 -2.39 -0.02 1.75 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.26 15.06 8.31 -92.71 -0.77 14.28 16 39 H 0.12 3.56 6.74 -2.91 -0.02 3.54 16 40 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -65.26 328.41 1.21 -64.04 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.22 Total: 17.21 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 4.44 Total: -33.28 kcal Atomic # 7 Polarization: -88.55 SS G_CDS: -5.47 Total: -94.02 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -65.26 1.21 -64.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757123829.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.553 kcal (2) G-P(sol) polarization free energy of solvation -65.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds