Wall clock time and date at job start Mon Mar 30 2020 07:17:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.33638 * 122.75006 * 2 1
4 4 S 1.76197 * 107.92414 * 179.97438 * 3 2 1
5 5 C 1.70982 * 90.28256 * 0.27628 * 4 3 2
6 6 C 1.50694 * 124.91423 * 179.83859 * 5 4 3
7 7 H 1.09008 * 109.46974 * 165.00326 * 6 5 4
8 8 Br 1.96595 * 109.47354 * 45.00043 * 6 5 4
9 9 C 1.50701 * 109.47176 * 284.99878 * 6 5 4
10 10 H 1.07997 * 120.00135 * 0.02562 * 9 6 5
11 11 C 1.37876 * 120.00133 * 180.02562 * 9 6 5
12 12 N 1.31511 * 120.00144 * 359.97438 * 11 9 6
13 13 Si 1.86804 * 120.00073 * 180.02562 * 11 9 6
14 14 H 1.48498 * 109.47285 * 89.99580 * 13 11 9
15 15 H 1.48501 * 109.46847 * 209.99568 * 13 11 9
16 16 H 1.48502 * 109.46769 * 329.99299 * 13 11 9
17 17 N 1.29032 * 110.16652 * 359.84282 * 5 4 3
18 18 H 1.09001 * 109.46953 * 269.72768 * 1 2 3
19 19 H 1.09000 * 109.47318 * 29.72366 * 1 2 3
20 20 H 1.09000 * 109.47161 * 149.72997 * 1 2 3
21 21 H 1.08004 * 126.03766 * 0.04457 * 3 2 1
22 22 H 0.96997 * 120.00777 * 180.02562 * 12 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2300 1.1239 0.0000
4 16 3.9333 0.6731 0.0007
5 6 3.5040 -0.9819 -0.0073
6 6 4.4835 -2.1271 -0.0142
7 1 3.9656 -3.0498 0.2476
8 35 5.9069 -1.7799 1.2966
9 6 5.0879 -2.2628 -1.3880
10 1 4.7926 -1.5871 -2.1771
11 6 6.0180 -3.2495 -1.6376
12 7 6.3780 -4.0721 -0.6767
13 14 6.7677 -3.4173 -3.3404
14 1 7.9947 -2.5852 -3.4252
15 1 7.1157 -4.8392 -3.5901
16 1 5.7886 -2.9609 -4.3594
17 7 2.2199 -1.1084 -0.0066
18 1 -0.3633 -0.0049 1.0277
19 1 -0.3634 0.8924 -0.5095
20 1 -0.3633 -0.8876 -0.5180
21 1 1.8392 2.1308 0.0007
22 1 7.0325 -4.7661 -0.8521
RHF calculation, no. of doubly occupied orbitals= 33
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000757131273.mol2 22
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:17:41
Heat of formation + Delta-G solvation = 28.111769 kcal
Electronic energy + Delta-G solvation = -10265.409779 eV
Core-core repulsion = 8186.085699 eV
Total energy + Delta-G solvation = -2079.324080 eV
No. of doubly occupied orbitals = 33
Molecular weight
(most abundant/longest-lived isotopes) = 260.952 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-39.17152 -33.97938 -31.89771 -29.54887 -27.24140 -26.80469 -24.39020 -21.19321
-19.00911 -17.10773 -16.56491 -15.12681 -14.38988 -14.27343 -13.16426 -12.86600
-12.63641 -12.24441 -11.92654 -11.48375 -11.04330 -10.82814 -10.69180 -10.26223
-10.04309 -8.97066 -8.94177 -8.73229 -8.27453 -8.02818 -7.80171 -6.33398
-4.47205 1.35129 2.07099 2.48880 3.09459 3.23151 3.26744 3.29003
3.62745 4.18525 4.84007 5.13487 5.48644 5.58206 5.78157 5.81685
6.01651 6.26517 6.75577 6.91433 7.49038 7.62524 8.43267 8.47180
9.12442 10.64196
Molecular weight = 260.95amu
Principal moments of inertia in cm(-1)
A = 0.025762 B = 0.010412 C = 0.008494
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1086.612221 B = 2688.586720 C = 3295.616387
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.067 3.933
3 C -0.304 4.304
4 S 0.132 5.868
5 C 0.108 3.892
6 C 0.167 3.833
7 H 0.091 0.909
8 Br -0.244 7.244
9 C -0.501 4.501
10 H 0.072 0.928
11 C 0.071 3.929
12 N -0.826 5.826
13 Si 0.909 3.091
14 H -0.274 1.274
15 H -0.281 1.281
16 H -0.269 1.269
17 N -0.491 5.491
18 H 0.069 0.931
19 H 0.068 0.932
20 H 0.072 0.928
21 H 0.165 0.835
22 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.545 6.887 1.643 8.414
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.066 4.066
3 C -0.444 4.444
4 S 0.388 5.612
5 C -0.170 4.170
6 C 0.076 3.924
7 H 0.109 0.891
8 Br -0.168 7.168
9 C -0.541 4.541
10 H 0.091 0.909
11 C -0.140 4.140
12 N -0.459 5.459
13 Si 0.735 3.265
14 H -0.199 1.199
15 H -0.206 1.206
16 H -0.194 1.194
17 N -0.207 5.207
18 H 0.088 0.912
19 H 0.086 0.914
20 H 0.091 0.909
21 H 0.183 0.817
22 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -3.242 6.854 2.164 7.885
hybrid contribution -0.752 -0.169 -1.087 1.332
sum -3.993 6.685 1.077 7.861
Atomic orbital electron populations
1.20283 0.88058 1.02694 1.02296 1.20233 0.97790 0.86998 1.01621
1.26708 0.96859 1.03183 1.17609 1.84001 1.05479 1.04060 1.67693
1.27609 0.93576 0.98222 0.97637 1.20764 0.86042 0.90730 0.94873
0.89116 1.97227 1.60526 1.95730 1.63362 1.20983 1.24269 1.16186
0.92662 0.90949 1.25039 0.95829 0.95022 0.98110 1.70052 1.28716
1.15382 1.31738 0.86296 0.79675 0.77752 0.82823 1.19916 1.20624
1.19398 1.66155 1.04739 1.31076 1.18684 0.91204 0.91355 0.90901
0.81705 0.91780
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.99 10.31 36.01 0.37 -0.62 14
2 C 0.07 1.21 6.74 -84.22 -0.57 0.64 14
3 C -0.30 -5.09 11.13 29.12 0.32 -4.76 14
4 S 0.13 2.53 22.51 -107.50 -2.42 0.11 14
5 C 0.11 2.45 6.11 -13.46 -0.08 2.36 14
6 C 0.17 4.19 3.12 -29.04 -0.09 4.10 14
7 H 0.09 2.46 8.14 -51.92 -0.42 2.03 14
8 Br -0.24 -5.86 31.35 -68.01 -2.13 -7.99 14
9 C -0.50 -13.07 8.57 -34.44 -0.30 -13.36 14
10 H 0.07 1.88 7.74 -52.49 -0.41 1.48 14
11 C 0.07 1.84 5.28 -17.82 -0.09 1.75 14
12 N -0.83 -22.03 12.11 55.43 0.67 -21.36 14
13 Si 0.91 20.04 29.54 -169.99 -5.02 15.02 14
14 H -0.27 -6.02 7.11 56.52 0.40 -5.61 14
15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 14
16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 14
17 N -0.49 -10.76 10.53 -8.05 -0.08 -10.84 14
18 H 0.07 0.84 8.14 -51.93 -0.42 0.42 14
19 H 0.07 0.74 8.12 -51.93 -0.42 0.32 14
20 H 0.07 0.99 8.14 -51.93 -0.42 0.56 14
21 H 0.17 2.16 8.06 -52.48 -0.42 1.73 14
22 H 0.27 6.85 8.31 -40.82 -0.34 6.51 14
LS Contribution 235.28 15.07 3.55 3.55
Total: -1.00 -27.63 235.28 -7.53 -35.16
By element:
Atomic # 1 Polarization: -2.10 SS G_CDS: -1.65 Total: -3.76 kcal
Atomic # 6 Polarization: -9.45 SS G_CDS: -0.43 Total: -9.89 kcal
Atomic # 7 Polarization: -32.79 SS G_CDS: 0.59 Total: -32.20 kcal
Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal
Atomic # 16 Polarization: 2.53 SS G_CDS: -2.42 Total: 0.11 kcal
Atomic # 35 Polarization: -5.86 SS G_CDS: -2.13 Total: -7.99 kcal
Total LS contribution 3.55 Total: 3.55 kcal
Total: -27.63 -7.53 -35.16 kcal
The number of atoms in the molecule is 22
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000757131273.mol2 22
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.268 kcal
(2) G-P(sol) polarization free energy of solvation -27.627 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.641 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.156 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.112 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds