Wall clock time and date at job start Mon Mar 30 2020 07:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33638 * 122.75006 * 2 1 4 4 S 1.76197 * 107.92414 * 179.97438 * 3 2 1 5 5 C 1.70982 * 90.28256 * 0.27628 * 4 3 2 6 6 C 1.50694 * 124.91423 * 179.83859 * 5 4 3 7 7 H 1.09008 * 109.46974 * 165.00326 * 6 5 4 8 8 Br 1.96595 * 109.47354 * 45.00043 * 6 5 4 9 9 C 1.50701 * 109.47176 * 284.99878 * 6 5 4 10 10 H 1.07997 * 120.00135 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00133 * 180.02562 * 9 6 5 12 12 N 1.31511 * 120.00144 * 359.97438 * 11 9 6 13 13 Si 1.86804 * 120.00073 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47285 * 89.99580 * 13 11 9 15 15 H 1.48501 * 109.46847 * 209.99568 * 13 11 9 16 16 H 1.48502 * 109.46769 * 329.99299 * 13 11 9 17 17 N 1.29032 * 110.16652 * 359.84282 * 5 4 3 18 18 H 1.09001 * 109.46953 * 269.72768 * 1 2 3 19 19 H 1.09000 * 109.47318 * 29.72366 * 1 2 3 20 20 H 1.09000 * 109.47161 * 149.72997 * 1 2 3 21 21 H 1.08004 * 126.03766 * 0.04457 * 3 2 1 22 22 H 0.96997 * 120.00777 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0073 6 6 4.4835 -2.1271 -0.0142 7 1 3.9656 -3.0498 0.2476 8 35 5.9069 -1.7799 1.2966 9 6 5.0879 -2.2628 -1.3880 10 1 4.7926 -1.5871 -2.1771 11 6 6.0180 -3.2495 -1.6376 12 7 6.3780 -4.0721 -0.6767 13 14 6.7677 -3.4173 -3.3404 14 1 7.9947 -2.5852 -3.4252 15 1 7.1157 -4.8392 -3.5901 16 1 5.7886 -2.9609 -4.3594 17 7 2.2199 -1.1084 -0.0066 18 1 -0.3633 -0.0049 1.0277 19 1 -0.3634 0.8924 -0.5095 20 1 -0.3633 -0.8876 -0.5180 21 1 1.8392 2.1308 0.0007 22 1 7.0325 -4.7661 -0.8521 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757131273.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:41 Heat of formation + Delta-G solvation = 28.111769 kcal Electronic energy + Delta-G solvation = -10265.409779 eV Core-core repulsion = 8186.085699 eV Total energy + Delta-G solvation = -2079.324080 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.17152 -33.97938 -31.89771 -29.54887 -27.24140 -26.80469 -24.39020 -21.19321 -19.00911 -17.10773 -16.56491 -15.12681 -14.38988 -14.27343 -13.16426 -12.86600 -12.63641 -12.24441 -11.92654 -11.48375 -11.04330 -10.82814 -10.69180 -10.26223 -10.04309 -8.97066 -8.94177 -8.73229 -8.27453 -8.02818 -7.80171 -6.33398 -4.47205 1.35129 2.07099 2.48880 3.09459 3.23151 3.26744 3.29003 3.62745 4.18525 4.84007 5.13487 5.48644 5.58206 5.78157 5.81685 6.01651 6.26517 6.75577 6.91433 7.49038 7.62524 8.43267 8.47180 9.12442 10.64196 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.025762 B = 0.010412 C = 0.008494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.612221 B = 2688.586720 C = 3295.616387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.067 3.933 3 C -0.304 4.304 4 S 0.132 5.868 5 C 0.108 3.892 6 C 0.167 3.833 7 H 0.091 0.909 8 Br -0.244 7.244 9 C -0.501 4.501 10 H 0.072 0.928 11 C 0.071 3.929 12 N -0.826 5.826 13 Si 0.909 3.091 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.269 1.269 17 N -0.491 5.491 18 H 0.069 0.931 19 H 0.068 0.932 20 H 0.072 0.928 21 H 0.165 0.835 22 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 6.887 1.643 8.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 C -0.444 4.444 4 S 0.388 5.612 5 C -0.170 4.170 6 C 0.076 3.924 7 H 0.109 0.891 8 Br -0.168 7.168 9 C -0.541 4.541 10 H 0.091 0.909 11 C -0.140 4.140 12 N -0.459 5.459 13 Si 0.735 3.265 14 H -0.199 1.199 15 H -0.206 1.206 16 H -0.194 1.194 17 N -0.207 5.207 18 H 0.088 0.912 19 H 0.086 0.914 20 H 0.091 0.909 21 H 0.183 0.817 22 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.242 6.854 2.164 7.885 hybrid contribution -0.752 -0.169 -1.087 1.332 sum -3.993 6.685 1.077 7.861 Atomic orbital electron populations 1.20283 0.88058 1.02694 1.02296 1.20233 0.97790 0.86998 1.01621 1.26708 0.96859 1.03183 1.17609 1.84001 1.05479 1.04060 1.67693 1.27609 0.93576 0.98222 0.97637 1.20764 0.86042 0.90730 0.94873 0.89116 1.97227 1.60526 1.95730 1.63362 1.20983 1.24269 1.16186 0.92662 0.90949 1.25039 0.95829 0.95022 0.98110 1.70052 1.28716 1.15382 1.31738 0.86296 0.79675 0.77752 0.82823 1.19916 1.20624 1.19398 1.66155 1.04739 1.31076 1.18684 0.91204 0.91355 0.90901 0.81705 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.31 36.01 0.37 -0.62 14 2 C 0.07 1.21 6.74 -84.22 -0.57 0.64 14 3 C -0.30 -5.09 11.13 29.12 0.32 -4.76 14 4 S 0.13 2.53 22.51 -107.50 -2.42 0.11 14 5 C 0.11 2.45 6.11 -13.46 -0.08 2.36 14 6 C 0.17 4.19 3.12 -29.04 -0.09 4.10 14 7 H 0.09 2.46 8.14 -51.92 -0.42 2.03 14 8 Br -0.24 -5.86 31.35 -68.01 -2.13 -7.99 14 9 C -0.50 -13.07 8.57 -34.44 -0.30 -13.36 14 10 H 0.07 1.88 7.74 -52.49 -0.41 1.48 14 11 C 0.07 1.84 5.28 -17.82 -0.09 1.75 14 12 N -0.83 -22.03 12.11 55.43 0.67 -21.36 14 13 Si 0.91 20.04 29.54 -169.99 -5.02 15.02 14 14 H -0.27 -6.02 7.11 56.52 0.40 -5.61 14 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 14 16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 14 17 N -0.49 -10.76 10.53 -8.05 -0.08 -10.84 14 18 H 0.07 0.84 8.14 -51.93 -0.42 0.42 14 19 H 0.07 0.74 8.12 -51.93 -0.42 0.32 14 20 H 0.07 0.99 8.14 -51.93 -0.42 0.56 14 21 H 0.17 2.16 8.06 -52.48 -0.42 1.73 14 22 H 0.27 6.85 8.31 -40.82 -0.34 6.51 14 LS Contribution 235.28 15.07 3.55 3.55 Total: -1.00 -27.63 235.28 -7.53 -35.16 By element: Atomic # 1 Polarization: -2.10 SS G_CDS: -1.65 Total: -3.76 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -0.43 Total: -9.89 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.59 Total: -32.20 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.42 Total: 0.11 kcal Atomic # 35 Polarization: -5.86 SS G_CDS: -2.13 Total: -7.99 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -27.63 -7.53 -35.16 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757131273.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.268 kcal (2) G-P(sol) polarization free energy of solvation -27.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds