Wall clock time and date at job start Mon Mar 30 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46843 * 2 1 4 4 C 1.50705 * 109.47152 * 119.99912 * 2 1 3 5 5 C 1.38364 * 119.84175 * 120.00006 * 4 2 1 6 6 C 1.37933 * 120.15732 * 180.02562 * 5 4 2 7 7 C 1.39674 * 119.84203 * 359.97438 * 6 5 4 8 8 C 1.47496 * 120.15863 * 179.97438 * 7 6 5 9 9 N 1.29742 * 120.00210 * 179.97438 * 8 7 6 10 10 N 1.40096 * 120.00206 * 179.97438 * 9 8 7 11 11 C 1.46503 * 120.00388 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.46872 * 29.99961 * 11 10 9 13 13 C 1.52999 * 109.46772 * 270.00516 * 11 10 9 14 14 C 1.50693 * 109.47142 * 150.00283 * 11 10 9 15 15 H 1.08003 * 119.99968 * 5.62744 * 14 11 10 16 16 C 1.37878 * 119.99930 * 185.62515 * 14 11 10 17 17 N 1.31514 * 120.00028 * 197.20150 * 16 14 11 18 18 Si 1.86802 * 119.99709 * 17.48131 * 16 14 11 19 19 H 1.48502 * 109.46690 * 179.72405 * 18 16 14 20 20 H 1.48501 * 109.47068 * 299.72066 * 18 16 14 21 21 H 1.48495 * 109.47337 * 59.72245 * 18 16 14 22 22 C 1.39689 * 119.68975 * 0.24673 * 7 6 5 23 23 C 1.37940 * 119.83625 * 359.54646 * 22 7 6 24 24 H 1.08996 * 109.46853 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47161 * 300.00020 * 1 2 3 26 26 H 1.08998 * 109.46936 * 59.99952 * 1 2 3 27 27 H 1.08994 * 109.47179 * 239.99976 * 2 1 3 28 28 H 1.09000 * 109.46564 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47394 * 299.99767 * 3 2 1 30 30 H 1.08994 * 109.47584 * 60.00453 * 3 2 1 31 31 H 1.08009 * 119.92086 * 0.02562 * 5 4 2 32 32 H 1.08007 * 120.07805 * 179.97438 * 6 5 4 33 33 H 1.07997 * 119.99760 * 359.97438 * 8 7 6 34 34 H 0.97006 * 119.99599 * 0.02562 * 10 9 8 35 35 H 1.08996 * 109.47683 * 66.31724 * 13 11 10 36 36 H 1.09008 * 109.46590 * 186.31222 * 13 11 10 37 37 H 1.09000 * 109.47312 * 306.30889 * 13 11 10 38 38 H 0.96998 * 120.00391 * 355.16066 * 17 16 14 39 39 H 1.07999 * 120.08306 * 179.72490 * 22 7 6 40 40 H 1.07992 * 119.91788 * 180.18477 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8276 -1.8351 1.0998 6 6 3.2906 -2.4907 2.2216 7 6 2.9552 -2.0163 3.4918 8 6 3.4459 -2.7122 4.6961 9 7 3.1329 -2.2687 5.8745 10 7 3.5985 -2.9300 7.0184 11 6 3.2446 -2.4295 8.3490 12 1 2.2713 -1.9408 8.3063 13 6 4.3002 -1.4238 8.8129 14 6 3.1867 -3.5807 9.3197 15 1 3.4807 -4.5702 9.0020 16 6 2.7585 -3.3708 10.6133 17 7 3.0180 -4.2623 11.5447 18 14 1.8029 -1.8238 11.0414 19 1 1.4553 -1.8404 12.4850 20 1 2.6356 -0.6301 10.7464 21 1 0.5583 -1.7712 10.2331 22 6 2.1480 -0.8830 3.6162 23 6 1.6958 -0.2350 2.4856 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.0866 -2.2006 0.1169 32 1 3.9109 -3.3687 2.1180 33 1 4.0657 -3.5910 4.5970 34 1 4.1553 -3.7193 6.9293 35 1 4.2649 -0.5400 8.1759 36 1 4.0991 -1.1361 9.8449 37 1 5.2886 -1.8788 8.7485 38 1 3.4484 -5.0990 11.3089 39 1 1.8811 -0.5133 4.5952 40 1 1.0742 0.6430 2.5803 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771882312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:56 Heat of formation + Delta-G solvation = 43.768359 kcal Electronic energy + Delta-G solvation = -18277.058251 eV Core-core repulsion = 15477.738702 eV Total energy + Delta-G solvation = -2799.319549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.47197 -36.77292 -35.50278 -33.88513 -31.79778 -30.81720 -29.94861 -27.33469 -27.32452 -24.81150 -23.62166 -22.72558 -20.78457 -20.08725 -19.77036 -17.78021 -16.50959 -16.30732 -15.25351 -14.90486 -14.52839 -13.94750 -13.79090 -13.72700 -13.40070 -13.20980 -13.01589 -12.71505 -12.52904 -12.29374 -12.23976 -11.84485 -11.55748 -11.38791 -11.30927 -10.95063 -10.75220 -10.69568 -10.52175 -10.06009 -9.82483 -9.59208 -9.10412 -8.81112 -8.67410 -8.34922 -7.00008 -6.56846 -4.23581 1.16071 1.55997 2.93634 3.33663 3.39832 3.53573 3.66598 4.08450 4.38688 4.55889 4.67575 5.02916 5.05242 5.09049 5.14867 5.19744 5.28858 5.42702 5.52847 5.54955 5.64067 5.72385 5.79186 5.89133 6.04502 6.04924 6.13417 6.19186 6.30290 6.43637 6.56728 6.65687 6.67109 6.71906 6.83106 7.07738 7.12270 7.34160 7.83795 7.96971 8.24841 8.77865 9.14381 9.45578 10.79951 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.034530 B = 0.003423 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.696530 B = 8178.887253 C = 8566.818114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.144 4.144 4 C -0.089 4.089 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.012 4.012 8 C -0.008 4.008 9 N -0.199 5.199 10 N -0.619 5.619 11 C 0.276 3.724 12 H 0.034 0.966 13 C -0.163 4.163 14 C -0.616 4.616 15 H 0.060 0.940 16 C 0.038 3.962 17 N -0.898 5.898 18 Si 1.045 2.955 19 H -0.283 1.283 20 H -0.271 1.271 21 H -0.280 1.280 22 C -0.098 4.098 23 C -0.114 4.114 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.373 0.627 35 H 0.027 0.973 36 H 0.062 0.938 37 H 0.043 0.957 38 H 0.269 0.731 39 H 0.130 0.870 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.789 8.409 -22.107 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.090 4.090 5 C -0.136 4.136 6 C -0.132 4.132 7 C -0.014 4.014 8 C -0.216 4.216 9 N -0.011 5.011 10 N -0.355 5.355 11 C 0.172 3.828 12 H 0.052 0.948 13 C -0.223 4.223 14 C -0.655 4.655 15 H 0.078 0.922 16 C -0.169 4.169 17 N -0.531 5.531 18 Si 0.872 3.128 19 H -0.208 1.208 20 H -0.197 1.197 21 H -0.206 1.206 22 C -0.118 4.118 23 C -0.132 4.132 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.119 0.881 34 H 0.210 0.790 35 H 0.046 0.954 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.148 0.852 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.010 9.975 -20.072 22.616 hybrid contribution 1.530 -2.077 -1.547 3.008 sum -1.480 7.898 -21.619 23.064 Atomic orbital electron populations 1.21863 0.94522 1.02011 1.01770 1.20094 0.95818 0.95927 0.95474 1.21861 1.01238 0.95278 1.01768 1.19832 0.98577 0.96137 0.94463 1.20839 0.98802 0.95851 0.98117 1.21102 1.00633 1.00062 0.91384 1.18443 0.96986 0.94820 0.91161 1.23529 1.06405 1.01459 0.90195 1.73887 1.11958 1.19913 0.95318 1.48753 1.55725 1.29968 1.01007 1.18800 0.93209 0.94091 0.76742 0.94805 1.22629 1.00780 0.98195 1.00655 1.22111 1.50842 0.95127 0.97454 0.92235 1.25725 0.95253 1.04169 0.91719 1.70871 1.39462 1.09099 1.33675 0.84050 0.76992 0.75288 0.76456 1.20819 1.19742 1.20614 1.21369 0.96639 0.94805 0.98996 1.20868 1.00536 1.00020 0.91788 0.92537 0.92378 0.92655 0.90768 0.92563 0.92657 0.92386 0.86414 0.86078 0.88080 0.79032 0.95437 0.91945 0.93810 0.92099 0.85189 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.00 37.16 0.33 -0.81 16 2 C -0.05 -0.47 3.09 -91.77 -0.28 -0.75 16 3 C -0.14 -1.12 9.01 37.16 0.33 -0.79 16 4 C -0.09 -0.97 4.79 -104.53 -0.50 -1.47 16 5 C -0.12 -1.30 9.65 -39.65 -0.38 -1.68 16 6 C -0.11 -1.37 9.79 -39.16 -0.38 -1.75 16 7 C -0.01 -0.18 5.87 -105.05 -0.62 -0.79 16 8 C -0.01 -0.13 10.75 -14.66 -0.16 -0.29 16 9 N -0.20 -3.98 10.61 32.16 0.34 -3.64 16 10 N -0.62 -13.59 6.10 -5.88 -0.04 -13.62 16 11 C 0.28 6.71 2.82 -69.08 -0.19 6.51 16 12 H 0.03 0.86 6.80 -51.93 -0.35 0.50 16 13 C -0.16 -3.69 9.19 37.16 0.34 -3.35 16 14 C -0.62 -17.06 9.01 -34.44 -0.31 -17.37 16 15 H 0.06 1.76 8.01 -52.48 -0.42 1.33 16 16 C 0.04 1.07 5.29 -17.82 -0.09 0.97 16 17 N -0.90 -26.95 13.70 55.43 0.76 -26.19 16 18 Si 1.04 24.69 26.29 -169.99 -4.47 20.23 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -5.91 5.76 56.52 0.33 -5.58 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.10 -1.42 9.58 -39.15 -0.38 -1.79 16 23 C -0.11 -1.38 8.69 -39.64 -0.34 -1.73 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.47 7.37 -51.93 -0.38 0.09 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.57 7.86 -51.93 -0.41 0.16 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.46 7.38 -51.93 -0.38 0.08 16 31 H 0.12 1.02 7.94 -52.48 -0.42 0.60 16 32 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.10 1.54 8.02 -52.49 -0.42 1.12 16 34 H 0.37 7.79 8.56 -182.59 -1.56 6.23 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 1.43 4.88 -51.92 -0.25 1.17 16 37 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.27 8.03 8.73 -40.82 -0.36 7.67 16 39 H 0.13 2.01 7.55 -52.49 -0.40 1.61 16 40 H 0.12 1.23 7.08 -52.49 -0.37 0.86 16 LS Contribution 330.29 15.07 4.98 4.98 Total: -1.00 -29.67 330.29 -8.62 -38.29 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.56 Total: 5.05 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -2.63 Total: -25.09 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 1.06 Total: -43.45 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -4.47 Total: 20.23 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.67 -8.62 -38.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.057 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds