Wall clock time and date at job start Mon Mar 30 2020 06:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46843 * 2 1 4 4 C 1.50705 * 109.47152 * 119.99912 * 2 1 3 5 5 C 1.38364 * 119.84175 * 120.00006 * 4 2 1 6 6 C 1.37933 * 120.15732 * 180.02562 * 5 4 2 7 7 C 1.39674 * 119.84203 * 359.97438 * 6 5 4 8 8 C 1.47496 * 120.15863 * 179.97438 * 7 6 5 9 9 N 1.29742 * 120.00210 * 179.97438 * 8 7 6 10 10 N 1.40096 * 120.00206 * 179.97438 * 9 8 7 11 11 C 1.46503 * 120.00388 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.46872 * 29.99961 * 11 10 9 13 13 C 1.52999 * 109.46772 * 270.00516 * 11 10 9 14 14 C 1.50693 * 109.47142 * 150.00283 * 11 10 9 15 15 H 1.08003 * 119.99968 * 5.62744 * 14 11 10 16 16 C 1.37878 * 119.99930 * 185.62515 * 14 11 10 17 17 N 1.31514 * 120.00028 * 197.20150 * 16 14 11 18 18 Si 1.86802 * 119.99709 * 17.48131 * 16 14 11 19 19 H 1.48502 * 109.46690 * 179.72405 * 18 16 14 20 20 H 1.48501 * 109.47068 * 299.72066 * 18 16 14 21 21 H 1.48495 * 109.47337 * 59.72245 * 18 16 14 22 22 C 1.39689 * 119.68975 * 0.24673 * 7 6 5 23 23 C 1.37940 * 119.83625 * 359.54646 * 22 7 6 24 24 H 1.08996 * 109.46853 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47161 * 300.00020 * 1 2 3 26 26 H 1.08998 * 109.46936 * 59.99952 * 1 2 3 27 27 H 1.08994 * 109.47179 * 239.99976 * 2 1 3 28 28 H 1.09000 * 109.46564 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47394 * 299.99767 * 3 2 1 30 30 H 1.08994 * 109.47584 * 60.00453 * 3 2 1 31 31 H 1.08009 * 119.92086 * 0.02562 * 5 4 2 32 32 H 1.08007 * 120.07805 * 179.97438 * 6 5 4 33 33 H 1.07997 * 119.99760 * 359.97438 * 8 7 6 34 34 H 0.97006 * 119.99599 * 0.02562 * 10 9 8 35 35 H 1.08996 * 109.47683 * 66.31724 * 13 11 10 36 36 H 1.09008 * 109.46590 * 186.31222 * 13 11 10 37 37 H 1.09000 * 109.47312 * 306.30889 * 13 11 10 38 38 H 0.96998 * 120.00391 * 355.16066 * 17 16 14 39 39 H 1.07999 * 120.08306 * 179.72490 * 22 7 6 40 40 H 1.07992 * 119.91788 * 180.18477 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8276 -1.8351 1.0998 6 6 3.2906 -2.4907 2.2216 7 6 2.9552 -2.0163 3.4918 8 6 3.4459 -2.7122 4.6961 9 7 3.1329 -2.2687 5.8745 10 7 3.5985 -2.9300 7.0184 11 6 3.2446 -2.4295 8.3490 12 1 2.2713 -1.9408 8.3063 13 6 4.3002 -1.4238 8.8129 14 6 3.1867 -3.5807 9.3197 15 1 3.4807 -4.5702 9.0020 16 6 2.7585 -3.3708 10.6133 17 7 3.0180 -4.2623 11.5447 18 14 1.8029 -1.8238 11.0414 19 1 1.4553 -1.8404 12.4850 20 1 2.6356 -0.6301 10.7464 21 1 0.5583 -1.7712 10.2331 22 6 2.1480 -0.8830 3.6162 23 6 1.6958 -0.2350 2.4856 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.0866 -2.2006 0.1169 32 1 3.9109 -3.3687 2.1180 33 1 4.0657 -3.5910 4.5970 34 1 4.1553 -3.7193 6.9293 35 1 4.2649 -0.5400 8.1759 36 1 4.0991 -1.1361 9.8449 37 1 5.2886 -1.8788 8.7485 38 1 3.4484 -5.0990 11.3089 39 1 1.8811 -0.5133 4.5952 40 1 1.0742 0.6430 2.5803 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771882312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:55 Heat of formation + Delta-G solvation = 27.029147 kcal Electronic energy + Delta-G solvation = -18277.784118 eV Core-core repulsion = 15477.738702 eV Total energy + Delta-G solvation = -2800.045416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.42718 -38.25241 -36.64505 -35.48411 -33.64989 -31.80600 -31.20990 -28.76592 -27.91655 -26.82925 -24.76322 -23.71249 -22.21467 -21.63772 -20.71544 -19.78501 -17.83678 -17.51932 -16.58597 -15.97751 -15.77128 -15.30434 -14.95077 -14.73245 -14.58730 -14.49833 -14.40407 -14.08892 -13.97308 -13.55624 -13.41356 -13.01354 -12.96672 -12.55044 -12.41963 -12.14573 -11.97706 -11.86471 -11.64279 -11.56693 -11.47030 -11.15306 -11.01122 -10.49410 -9.86760 -9.78054 -8.90625 -8.39637 -6.48586 0.07210 0.58930 1.45180 1.52083 1.69875 1.71241 2.11043 2.42423 2.98502 3.04105 3.77100 3.91094 3.94662 4.20347 4.20836 4.39243 4.42882 4.51727 4.59499 4.61639 4.73155 4.76896 4.80625 4.86836 4.97094 5.03114 5.05641 5.11024 5.19111 5.25863 5.32106 5.41242 5.44925 5.48533 5.62765 5.70497 5.80574 5.90250 5.95564 6.14920 6.18982 6.63806 7.29413 7.63081 8.54595 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.034530 B = 0.003423 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.696530 B = 8178.887253 C = 8566.818114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.078 4.078 5 C -0.120 4.120 6 C -0.102 4.102 7 C -0.049 4.049 8 C 0.029 3.971 9 N -0.241 5.241 10 N -0.642 5.642 11 C 0.282 3.718 12 H 0.026 0.974 13 C -0.155 4.155 14 C -0.618 4.618 15 H 0.026 0.974 16 C -0.009 4.009 17 N -0.928 5.928 18 Si 1.081 2.919 19 H -0.282 1.282 20 H -0.240 1.240 21 H -0.268 1.268 22 C -0.110 4.110 23 C -0.120 4.120 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.371 0.629 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.040 0.960 38 H 0.254 0.746 39 H 0.112 0.888 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 10.190 -25.470 27.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.079 4.079 5 C -0.138 4.138 6 C -0.122 4.122 7 C -0.051 4.051 8 C -0.181 4.181 9 N -0.050 5.050 10 N -0.378 5.378 11 C 0.177 3.823 12 H 0.044 0.956 13 C -0.214 4.214 14 C -0.657 4.657 15 H 0.044 0.956 16 C -0.209 4.209 17 N -0.563 5.563 18 Si 0.901 3.099 19 H -0.208 1.208 20 H -0.164 1.164 21 H -0.194 1.194 22 C -0.130 4.130 23 C -0.138 4.138 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.135 0.865 34 H 0.208 0.792 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.130 0.870 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.386 11.759 -23.464 26.463 hybrid contribution 1.638 -2.671 -0.887 3.257 sum -1.748 9.087 -24.351 26.050 Atomic orbital electron populations 1.21865 0.94000 1.01907 1.02395 1.20181 0.96185 0.96216 0.94660 1.21860 1.01019 0.94841 1.02394 1.20240 0.97004 0.95682 0.94956 1.21235 0.98022 0.95434 0.99082 1.21380 0.99904 1.00373 0.90578 1.18524 0.99289 0.95986 0.91288 1.24126 1.03265 1.00561 0.90099 1.73939 1.14462 1.21108 0.95499 1.48360 1.57523 1.30871 1.01037 1.18473 0.93441 0.92787 0.77568 0.95598 1.22494 0.99927 0.98348 1.00641 1.22309 1.49834 0.94981 0.98567 0.95607 1.27107 0.95393 1.06473 0.91922 1.70993 1.41391 1.09368 1.34548 0.83623 0.76683 0.73197 0.76373 1.20791 1.16378 1.19372 1.21369 0.97251 0.95296 0.99115 1.21032 1.00702 1.00422 0.91660 0.93006 0.92900 0.91000 0.89157 0.92907 0.91024 0.92884 0.83314 0.83987 0.86516 0.79215 0.93638 0.92282 0.94079 0.93632 0.87025 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.00 71.98 0.65 -1.17 16 2 C -0.05 -0.72 3.09 -11.54 -0.04 -0.76 16 3 C -0.14 -1.77 9.01 71.98 0.65 -1.12 16 4 C -0.08 -1.46 4.79 -19.80 -0.09 -1.55 16 5 C -0.12 -2.18 9.65 22.23 0.21 -1.97 16 6 C -0.10 -2.21 9.79 22.54 0.22 -1.99 16 7 C -0.05 -1.37 5.87 -20.14 -0.12 -1.49 16 8 C 0.03 0.97 10.75 87.44 0.94 1.91 16 9 N -0.24 -9.72 10.61 -52.16 -0.55 -10.27 16 10 N -0.64 -28.77 6.10 -172.53 -1.05 -29.82 16 11 C 0.28 13.93 2.82 44.24 0.12 14.05 16 12 H 0.03 1.32 6.80 -2.39 -0.02 1.30 16 13 C -0.16 -6.93 9.19 71.98 0.66 -6.27 16 14 C -0.62 -35.36 9.01 25.60 0.23 -35.13 16 15 H 0.03 1.60 8.01 -2.91 -0.02 1.58 16 16 C -0.01 -0.53 5.29 84.66 0.45 -0.08 16 17 N -0.93 -57.51 13.70 21.45 0.29 -57.21 16 18 Si 1.08 49.64 26.29 68.60 1.80 51.44 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.24 -9.75 5.76 99.48 0.57 -9.17 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 C -0.11 -3.10 9.58 22.55 0.22 -2.89 16 23 C -0.12 -2.70 8.69 22.23 0.19 -2.50 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.05 0.72 7.37 -2.38 -0.02 0.70 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.09 0.97 7.86 -2.39 -0.02 0.95 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.71 7.38 -2.39 -0.02 0.69 16 31 H 0.15 1.82 7.94 -2.91 -0.02 1.80 16 32 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 33 H 0.12 3.41 8.02 -2.91 -0.02 3.39 16 34 H 0.37 16.06 8.56 -213.32 -1.83 14.23 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 2.63 4.88 -2.38 -0.01 2.62 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.25 15.96 8.73 -92.71 -0.81 15.15 16 39 H 0.11 3.51 7.55 -2.91 -0.02 3.49 16 40 H 0.13 2.51 7.08 -2.91 -0.02 2.49 16 Total: -1.00 -65.94 330.29 3.80 -62.13 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: -0.98 Total: 24.70 kcal Atomic # 6 Polarization: -45.25 SS G_CDS: 4.30 Total: -40.96 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -1.31 Total: -97.31 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.80 Total: 51.44 kcal Total: -65.94 3.80 -62.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.162 kcal (2) G-P(sol) polarization free energy of solvation -65.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds