Wall clock time and date at job start Mon Mar 30 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47022 * 2 1 4 4 C 1.50701 * 109.46842 * 119.99829 * 2 1 3 5 5 C 1.38371 * 119.84072 * 120.00026 * 4 2 1 6 6 C 1.37938 * 120.15633 * 180.02562 * 5 4 2 7 7 C 1.39686 * 119.84051 * 359.97438 * 6 5 4 8 8 C 1.47488 * 120.15224 * 179.97438 * 7 6 5 9 9 N 1.29746 * 119.99598 * 180.02562 * 8 7 6 10 10 N 1.40104 * 120.00087 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00312 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46733 * 330.00215 * 11 10 9 13 13 C 1.53000 * 109.47145 * 89.99780 * 11 10 9 14 14 C 1.50694 * 109.47115 * 209.99853 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.39680 * 119.68765 * 0.24760 * 7 6 5 23 23 C 1.37933 * 119.84173 * 359.54139 * 22 7 6 24 24 H 1.09002 * 109.46945 * 300.00185 * 1 2 3 25 25 H 1.08998 * 109.47157 * 60.00479 * 1 2 3 26 26 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46945 * 239.99815 * 2 1 3 28 28 H 1.09002 * 109.47412 * 60.00101 * 3 2 1 29 29 H 1.09005 * 109.46603 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47222 * 299.99643 * 3 2 1 31 31 H 1.07999 * 119.92588 * 359.97438 * 5 4 2 32 32 H 1.07999 * 120.08235 * 179.97438 * 6 5 4 33 33 H 1.07994 * 120.00464 * 359.97438 * 8 7 6 34 34 H 0.97006 * 119.99719 * 359.97438 * 10 9 8 35 35 H 1.09007 * 109.47356 * 300.00099 * 13 11 10 36 36 H 1.09000 * 109.47156 * 59.99824 * 13 11 10 37 37 H 1.08997 * 109.47359 * 180.02562 * 13 11 10 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.07717 * 179.72874 * 22 7 6 40 40 H 1.08000 * 119.92164 * 180.18724 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8276 -1.8351 1.0998 6 6 3.2904 -2.4907 2.2217 7 6 2.9549 -2.0163 3.4919 8 6 3.4456 -2.7122 4.6962 9 7 3.1317 -2.2692 5.8745 10 7 3.5973 -2.9306 7.0185 11 6 3.2434 -2.4301 8.3491 12 1 3.1098 -1.3491 8.3069 13 6 1.9413 -3.0871 8.8114 14 6 4.3464 -2.7625 9.3206 15 1 5.2232 -3.2938 8.9811 16 6 4.2357 -2.3891 10.6433 17 7 3.1678 -1.7425 11.0569 18 14 5.6027 -2.8019 11.8477 19 1 5.2440 -2.2944 13.1965 20 1 5.7844 -4.2745 11.9046 21 1 6.8666 -2.1641 11.3994 22 6 2.1479 -0.8830 3.6162 23 6 1.6958 -0.2350 2.4857 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 3.0859 -2.2011 0.1171 32 1 3.9108 -3.3687 2.1183 33 1 4.0655 -3.5910 4.5971 34 1 4.1541 -3.7199 6.9296 35 1 1.1435 -2.8467 8.1087 36 1 2.0748 -4.1681 8.8535 37 1 1.6777 -2.7144 9.8012 38 1 3.0899 -1.4803 11.9876 39 1 1.8810 -0.5133 4.5952 40 1 1.0742 0.6431 2.5803 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771882313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:59 Heat of formation + Delta-G solvation = 43.227447 kcal Electronic energy + Delta-G solvation = -18206.323445 eV Core-core repulsion = 15406.980440 eV Total energy + Delta-G solvation = -2799.343005 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.39092 -36.62573 -35.39338 -33.82561 -31.54650 -30.72583 -29.61709 -27.27246 -26.96189 -25.24856 -23.57756 -22.64198 -20.82103 -20.13855 -19.67150 -17.05035 -16.42458 -15.78762 -15.20135 -14.85581 -14.71169 -13.95698 -13.74283 -13.66682 -13.42556 -13.10445 -12.84549 -12.51569 -12.42533 -12.17202 -11.98416 -11.47925 -11.27662 -11.24238 -11.05094 -10.87068 -10.71637 -10.62348 -10.53293 -10.25553 -10.22086 -9.53108 -9.06655 -8.73248 -8.64686 -8.45641 -6.78169 -6.15519 -4.24102 1.25467 1.63917 3.04969 3.24457 3.29151 3.30712 3.78830 4.17439 4.35113 4.62088 4.73524 5.08424 5.13490 5.16134 5.17236 5.29401 5.34708 5.47656 5.60241 5.62577 5.69259 5.80047 5.84891 5.99077 6.09815 6.11434 6.23037 6.27751 6.50289 6.74233 6.78525 6.80386 6.97965 7.03742 7.13467 7.20783 7.55598 7.75601 7.83853 8.12709 8.27971 8.83077 9.30385 9.42747 10.90342 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041038 B = 0.003109 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.125490 B = 9004.081602 C = 9174.115501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.091 4.091 5 C -0.118 4.118 6 C -0.113 4.113 7 C -0.009 4.009 8 C -0.017 4.017 9 N -0.192 5.192 10 N -0.622 5.622 11 C 0.297 3.703 12 H 0.042 0.958 13 C -0.151 4.151 14 C -0.532 4.532 15 H 0.059 0.941 16 C 0.067 3.933 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.285 1.285 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.098 4.098 23 C -0.114 4.114 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.369 0.631 35 H 0.012 0.988 36 H 0.026 0.974 37 H 0.090 0.910 38 H 0.265 0.735 39 H 0.131 0.869 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 1.930 -19.840 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.202 4.202 4 C -0.092 4.092 5 C -0.136 4.136 6 C -0.134 4.134 7 C -0.011 4.011 8 C -0.225 4.225 9 N -0.005 5.005 10 N -0.358 5.358 11 C 0.195 3.805 12 H 0.060 0.940 13 C -0.210 4.210 14 C -0.571 4.571 15 H 0.078 0.922 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.731 3.269 19 H -0.210 1.210 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.119 4.119 23 C -0.132 4.132 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.118 0.882 34 H 0.205 0.795 35 H 0.032 0.968 36 H 0.045 0.955 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.149 0.851 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.566 2.782 -18.905 19.438 hybrid contribution 1.456 -1.326 0.457 2.021 sum -2.110 1.456 -18.448 18.626 Atomic orbital electron populations 1.21862 0.94579 1.01961 1.01740 1.20085 0.95771 0.95920 0.95491 1.21863 1.01254 0.95297 1.01740 1.19812 0.98771 0.96217 0.94424 1.20826 0.98853 0.95887 0.98065 1.21093 1.00767 1.00139 0.91414 1.18452 0.96718 0.94711 0.91199 1.23490 1.06991 1.01739 0.90265 1.73910 1.11625 1.19652 0.95296 1.49100 1.55159 1.30000 1.01588 1.18541 0.92648 0.94871 0.74461 0.94027 1.22210 0.97386 0.98949 1.02439 1.21198 1.03964 1.38524 0.93458 0.92249 1.24862 0.96076 0.94681 0.97988 1.69880 1.27264 1.38430 1.16785 0.86474 0.81863 0.78744 0.79836 1.21038 1.20155 1.20159 1.21378 0.96667 0.94806 0.99020 1.20867 1.00539 0.99974 0.91799 0.92372 0.92709 0.92571 0.90826 0.92367 0.92557 0.92710 0.86511 0.86150 0.88236 0.79533 0.96848 0.95512 0.89115 0.92467 0.85133 0.86446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.00 37.16 0.33 -0.86 16 2 C -0.05 -0.49 3.09 -91.77 -0.28 -0.77 16 3 C -0.14 -1.20 9.00 37.16 0.33 -0.87 16 4 C -0.09 -1.04 4.79 -104.52 -0.50 -1.55 16 5 C -0.12 -1.36 9.65 -39.64 -0.38 -1.74 16 6 C -0.11 -1.45 9.79 -39.15 -0.38 -1.84 16 7 C -0.01 -0.13 5.87 -105.05 -0.62 -0.75 16 8 C -0.02 -0.30 10.75 -14.66 -0.16 -0.46 16 9 N -0.19 -4.00 10.61 32.16 0.34 -3.66 16 10 N -0.62 -14.00 6.10 -5.88 -0.04 -14.04 16 11 C 0.30 7.64 3.23 -69.09 -0.22 7.41 16 12 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.15 -3.74 9.29 37.16 0.35 -3.40 16 14 C -0.53 -14.39 8.74 -34.44 -0.30 -14.69 16 15 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 16 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 17 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 18 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 22 C -0.10 -1.50 9.58 -39.15 -0.38 -1.88 16 23 C -0.11 -1.46 8.69 -39.64 -0.34 -1.80 16 24 H 0.06 0.49 7.37 -51.93 -0.38 0.11 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 28 H 0.06 0.50 7.38 -51.93 -0.38 0.12 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.12 1.06 7.94 -52.49 -0.42 0.65 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.10 1.56 8.02 -52.49 -0.42 1.14 16 34 H 0.37 7.68 8.58 -182.59 -1.57 6.11 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 38 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.13 2.15 7.55 -52.49 -0.40 1.75 16 40 H 0.12 1.31 7.08 -52.49 -0.37 0.93 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -28.33 334.67 -9.28 -37.61 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.59 Total: 4.82 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -2.65 Total: -21.45 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.93 Total: -41.83 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.33 -9.28 -37.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.840 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds