Wall clock time and date at job start Mon Mar 30 2020 06:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47022 * 2 1 4 4 C 1.50701 * 109.46842 * 119.99829 * 2 1 3 5 5 C 1.38371 * 119.84072 * 120.00026 * 4 2 1 6 6 C 1.37938 * 120.15633 * 180.02562 * 5 4 2 7 7 C 1.39686 * 119.84051 * 359.97438 * 6 5 4 8 8 C 1.47488 * 120.15224 * 179.97438 * 7 6 5 9 9 N 1.29746 * 119.99598 * 180.02562 * 8 7 6 10 10 N 1.40104 * 120.00087 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00312 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46733 * 330.00215 * 11 10 9 13 13 C 1.53000 * 109.47145 * 89.99780 * 11 10 9 14 14 C 1.50694 * 109.47115 * 209.99853 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.39680 * 119.68765 * 0.24760 * 7 6 5 23 23 C 1.37933 * 119.84173 * 359.54139 * 22 7 6 24 24 H 1.09002 * 109.46945 * 300.00185 * 1 2 3 25 25 H 1.08998 * 109.47157 * 60.00479 * 1 2 3 26 26 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46945 * 239.99815 * 2 1 3 28 28 H 1.09002 * 109.47412 * 60.00101 * 3 2 1 29 29 H 1.09005 * 109.46603 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47222 * 299.99643 * 3 2 1 31 31 H 1.07999 * 119.92588 * 359.97438 * 5 4 2 32 32 H 1.07999 * 120.08235 * 179.97438 * 6 5 4 33 33 H 1.07994 * 120.00464 * 359.97438 * 8 7 6 34 34 H 0.97006 * 119.99719 * 359.97438 * 10 9 8 35 35 H 1.09007 * 109.47356 * 300.00099 * 13 11 10 36 36 H 1.09000 * 109.47156 * 59.99824 * 13 11 10 37 37 H 1.08997 * 109.47359 * 180.02562 * 13 11 10 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.07717 * 179.72874 * 22 7 6 40 40 H 1.08000 * 119.92164 * 180.18724 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8276 -1.8351 1.0998 6 6 3.2904 -2.4907 2.2217 7 6 2.9549 -2.0163 3.4919 8 6 3.4456 -2.7122 4.6962 9 7 3.1317 -2.2692 5.8745 10 7 3.5973 -2.9306 7.0185 11 6 3.2434 -2.4301 8.3491 12 1 3.1098 -1.3491 8.3069 13 6 1.9413 -3.0871 8.8114 14 6 4.3464 -2.7625 9.3206 15 1 5.2232 -3.2938 8.9811 16 6 4.2357 -2.3891 10.6433 17 7 3.1678 -1.7425 11.0569 18 14 5.6027 -2.8019 11.8477 19 1 5.2440 -2.2944 13.1965 20 1 5.7844 -4.2745 11.9046 21 1 6.8666 -2.1641 11.3994 22 6 2.1479 -0.8830 3.6162 23 6 1.6958 -0.2350 2.4857 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 3.0859 -2.2011 0.1171 32 1 3.9108 -3.3687 2.1183 33 1 4.0655 -3.5910 4.5971 34 1 4.1541 -3.7199 6.9296 35 1 1.1435 -2.8467 8.1087 36 1 2.0748 -4.1681 8.8535 37 1 1.6777 -2.7144 9.8012 38 1 3.0899 -1.4803 11.9876 39 1 1.8810 -0.5133 4.5952 40 1 1.0742 0.6431 2.5803 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771882313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:58 Heat of formation + Delta-G solvation = 28.810384 kcal Electronic energy + Delta-G solvation = -18206.948615 eV Core-core repulsion = 15406.980440 eV Total energy + Delta-G solvation = -2799.968175 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40465 -38.14767 -36.59133 -35.45424 -33.28065 -31.77803 -30.96948 -28.53357 -27.91150 -27.31022 -24.75823 -23.69439 -22.43590 -21.58432 -20.68202 -18.83662 -17.63300 -17.35337 -16.86389 -16.08588 -15.75050 -15.39940 -14.79811 -14.60400 -14.54635 -14.46201 -14.22588 -14.07156 -13.60935 -13.24944 -13.16965 -12.94290 -12.85984 -12.70916 -12.41122 -12.23252 -12.14420 -12.08116 -11.89123 -11.54879 -11.46302 -11.17738 -10.88988 -10.60356 -9.79157 -9.76503 -8.37559 -8.18420 -6.37279 0.11087 0.60464 1.41634 1.43809 1.51750 1.76069 2.16453 2.46056 3.06222 3.09312 3.79701 3.92750 3.98758 4.22505 4.24323 4.40007 4.53357 4.60594 4.62939 4.72416 4.77426 4.87130 4.95233 5.04094 5.06045 5.07715 5.11077 5.14592 5.26749 5.31916 5.41708 5.45369 5.48384 5.64607 5.66696 5.79469 5.82215 5.90194 6.16369 6.17413 6.39029 6.81867 7.34322 7.76078 8.85376 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041038 B = 0.003109 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.125490 B = 9004.081602 C = 9174.115501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C -0.144 4.144 4 C -0.079 4.079 5 C -0.119 4.119 6 C -0.101 4.101 7 C -0.047 4.047 8 C 0.024 3.976 9 N -0.245 5.245 10 N -0.642 5.642 11 C 0.308 3.692 12 H -0.001 1.001 13 C -0.136 4.136 14 C -0.551 4.551 15 H 0.061 0.939 16 C 0.019 3.981 17 N -0.915 5.915 18 Si 0.972 3.028 19 H -0.280 1.280 20 H -0.267 1.267 21 H -0.273 1.273 22 C -0.113 4.113 23 C -0.121 4.121 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.373 0.627 35 H 0.016 0.984 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.268 0.732 39 H 0.105 0.895 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 1.324 -22.698 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.202 4.202 4 C -0.080 4.080 5 C -0.136 4.136 6 C -0.122 4.122 7 C -0.049 4.049 8 C -0.186 4.186 9 N -0.055 5.055 10 N -0.379 5.379 11 C 0.204 3.796 12 H 0.017 0.983 13 C -0.196 4.196 14 C -0.590 4.590 15 H 0.080 0.920 16 C -0.182 4.182 17 N -0.553 5.553 18 Si 0.796 3.204 19 H -0.205 1.205 20 H -0.192 1.192 21 H -0.198 1.198 22 C -0.134 4.134 23 C -0.139 4.139 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.169 0.831 32 H 0.163 0.837 33 H 0.138 0.862 34 H 0.210 0.790 35 H 0.035 0.965 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.123 0.877 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.823 2.176 -21.781 22.071 hybrid contribution 1.163 -1.063 0.982 1.856 sum -1.661 1.113 -20.799 20.895 Atomic orbital electron populations 1.21864 0.94004 1.01949 1.02322 1.20177 0.96190 0.96128 0.94678 1.21865 1.01018 0.94960 1.02322 1.20230 0.97162 0.95802 0.94803 1.21249 0.97907 0.95341 0.99152 1.21391 0.99905 1.00463 0.90413 1.18558 0.98990 0.95800 0.91545 1.24117 1.03666 1.00836 0.89996 1.73973 1.14535 1.21209 0.95755 1.48554 1.57185 1.30956 1.01162 1.18104 0.92735 0.92414 0.76342 0.98289 1.22026 0.97406 0.98903 1.01219 1.21501 1.04435 1.38792 0.94230 0.92045 1.25737 0.98392 0.94358 0.99694 1.70013 1.28975 1.39099 1.17210 0.85406 0.78726 0.78847 0.77405 1.20524 1.19172 1.19804 1.21338 0.97584 0.95569 0.98888 1.21011 1.00777 1.00347 0.91767 0.93086 0.90951 0.92883 0.88965 0.93094 0.92928 0.90941 0.83110 0.83699 0.86155 0.78960 0.96502 0.95028 0.91161 0.92324 0.87660 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.00 71.98 0.65 -1.32 16 2 C -0.05 -0.77 3.09 -11.54 -0.04 -0.81 16 3 C -0.14 -1.99 9.00 71.98 0.65 -1.34 16 4 C -0.08 -1.59 4.79 -19.80 -0.09 -1.69 16 5 C -0.12 -2.28 9.65 22.23 0.21 -2.06 16 6 C -0.10 -2.30 9.79 22.55 0.22 -2.08 16 7 C -0.05 -1.41 5.87 -20.14 -0.12 -1.53 16 8 C 0.02 0.82 10.75 87.44 0.94 1.76 16 9 N -0.25 -10.62 10.61 -52.17 -0.55 -11.17 16 10 N -0.64 -30.01 6.10 -172.53 -1.05 -31.06 16 11 C 0.31 16.62 3.23 44.24 0.14 16.77 16 12 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 13 C -0.14 -7.06 9.29 71.98 0.67 -6.39 16 14 C -0.55 -30.60 8.74 25.60 0.22 -30.37 16 15 H 0.06 3.30 7.79 -2.91 -0.02 3.27 16 16 C 0.02 1.02 5.30 84.66 0.45 1.47 16 17 N -0.91 -52.60 11.32 21.45 0.24 -52.36 16 18 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 C -0.11 -3.51 9.58 22.55 0.22 -3.30 16 23 C -0.12 -2.99 8.69 22.23 0.19 -2.80 16 24 H 0.05 0.77 7.37 -2.39 -0.02 0.75 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.09 1.05 7.87 -2.39 -0.02 1.04 16 28 H 0.05 0.77 7.38 -2.39 -0.02 0.76 16 29 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.15 1.92 7.94 -2.91 -0.02 1.90 16 32 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.12 3.59 8.02 -2.91 -0.02 3.56 16 34 H 0.37 15.98 8.58 -213.31 -1.83 14.15 16 35 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 38 H 0.27 14.50 8.31 -92.71 -0.77 13.72 16 39 H 0.11 3.74 7.55 -2.91 -0.02 3.72 16 40 H 0.13 2.79 7.08 -2.91 -0.02 2.77 16 Total: -1.00 -63.29 334.67 4.16 -59.13 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -0.82 Total: 24.12 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 4.32 Total: -33.69 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -1.36 Total: -94.59 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -63.29 4.16 -59.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.940 kcal (2) G-P(sol) polarization free energy of solvation -63.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds