Wall clock time and date at job start Mon Mar 30 2020 06:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.28008 * 119.99954 * 2 1 4 4 N 1.40109 * 119.99837 * 0.02562 * 3 2 1 5 5 C 1.46498 * 119.99760 * 180.27649 * 4 3 2 6 6 H 1.08998 * 109.47386 * 329.72195 * 5 4 3 7 7 C 1.52999 * 109.47214 * 89.72111 * 5 4 3 8 8 C 1.50697 * 109.46790 * 209.72098 * 5 4 3 9 9 H 1.08003 * 120.00582 * 0.02562 * 8 5 4 10 10 C 1.37885 * 119.99874 * 179.97438 * 8 5 4 11 11 N 1.31512 * 120.00084 * 0.02562 * 10 8 5 12 12 Si 1.86797 * 119.99742 * 179.97438 * 10 8 5 13 13 H 1.48501 * 109.46994 * 60.00871 * 12 10 8 14 14 H 1.48504 * 109.46752 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47640 * 300.00344 * 12 10 8 16 16 C 1.50700 * 120.00195 * 180.02562 * 2 1 3 17 17 H 1.09005 * 109.46735 * 55.00029 * 16 2 1 18 18 C 1.52997 * 109.47244 * 174.99733 * 16 2 1 19 19 C 1.50695 * 109.47073 * 295.00371 * 16 2 1 20 20 C 1.38244 * 119.99581 * 299.72119 * 19 16 2 21 21 C 1.38241 * 119.99641 * 179.81214 * 20 19 16 22 22 C 1.38234 * 120.00098 * 0.40131 * 21 20 19 23 23 C 1.38242 * 119.99788 * 359.85417 * 22 21 20 24 24 C 1.38227 * 120.00521 * 120.00113 * 19 16 2 25 25 H 1.08998 * 109.46789 * 89.99827 * 1 2 3 26 26 H 1.09001 * 109.46745 * 209.99965 * 1 2 3 27 27 H 1.08994 * 109.46953 * 329.99905 * 1 2 3 28 28 H 0.97001 * 119.99794 * 359.97438 * 4 3 2 29 29 H 1.09000 * 109.47195 * 299.99379 * 7 5 4 30 30 H 1.08999 * 109.47020 * 60.00304 * 7 5 4 31 31 H 1.09003 * 109.47035 * 179.97438 * 7 5 4 32 32 H 0.96999 * 120.00094 * 179.97438 * 11 10 8 33 33 H 1.09011 * 109.47018 * 60.00003 * 18 16 2 34 34 H 1.08996 * 109.47343 * 179.97438 * 18 16 2 35 35 H 1.09000 * 109.47308 * 300.00422 * 18 16 2 36 36 H 1.07997 * 119.99984 * 0.02562 * 20 19 16 37 37 H 1.07997 * 119.99601 * 180.23251 * 21 20 19 38 38 H 1.07995 * 120.00058 * 179.83419 * 22 21 20 39 39 H 1.07998 * 119.99681 * 179.97438 * 23 22 21 40 40 H 1.08007 * 120.00078 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1471 1.1086 0.0000 4 7 1.4465 2.3219 0.0005 5 6 2.1790 3.5906 -0.0056 6 1 3.1316 3.4627 0.5085 7 6 2.4335 4.0257 -1.4502 8 6 1.3647 4.6441 0.7002 9 1 0.3985 4.3936 1.1126 10 6 1.8538 5.9277 0.8206 11 7 3.0306 6.2327 0.3190 12 14 0.8442 7.2336 1.6949 13 1 0.5962 6.8114 3.0969 14 1 1.5867 8.5197 1.6888 15 1 -0.4531 7.4083 0.9937 16 6 2.2606 -1.3051 -0.0006 17 1 1.9318 -1.9141 -0.8427 18 6 3.7601 -1.0282 -0.1262 19 6 1.9917 -2.0409 1.2867 20 6 2.3322 -1.4647 2.4963 21 6 2.0820 -2.1380 3.6774 22 6 1.4989 -3.3911 3.6485 23 6 1.1633 -3.9695 2.4386 24 6 1.4100 -3.2945 1.2578 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 0.4765 2.3219 0.0005 29 1 3.0225 3.2637 -1.9607 30 1 1.4809 4.1537 -1.9642 31 1 2.9781 4.9699 -1.4547 32 1 3.3745 7.1357 0.4033 33 1 4.0889 -0.4191 0.7159 34 1 4.3051 -1.9721 -0.1262 35 1 3.9545 -0.4959 -1.0574 36 1 2.7905 -0.4870 2.5187 37 1 2.3445 -1.6862 4.6225 38 1 1.3059 -3.9182 4.5711 39 1 0.7082 -4.9486 2.4160 40 1 1.1477 -3.7465 0.3126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771882522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:12 Heat of formation + Delta-G solvation = 38.993244 kcal Electronic energy + Delta-G solvation = -19045.106377 eV Core-core repulsion = 16245.579763 eV Total energy + Delta-G solvation = -2799.526614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47906 -38.64398 -36.62737 -34.77526 -32.86709 -31.71575 -30.26170 -30.09271 -28.05015 -27.22244 -25.02263 -23.37351 -22.75368 -21.80408 -20.03516 -18.44589 -17.64485 -17.02418 -16.62559 -16.30361 -16.05695 -15.51826 -15.06873 -14.75138 -14.55945 -14.27764 -14.01742 -13.88891 -13.58008 -13.29338 -13.15452 -12.94860 -12.88633 -12.71963 -12.47961 -12.28584 -12.18962 -12.10576 -11.92615 -11.63178 -11.56860 -11.08938 -10.64765 -10.56161 -9.73760 -9.53769 -8.48815 -8.16896 -6.34270 0.51256 0.58168 1.41021 1.42996 1.50955 1.63500 2.28470 2.53940 2.98585 3.11089 3.77782 3.93167 4.12320 4.23809 4.28464 4.36420 4.45798 4.51745 4.66742 4.70769 4.74261 4.78369 4.81547 4.96454 4.98727 5.08787 5.14959 5.22469 5.23801 5.27149 5.40835 5.47590 5.61866 5.66726 5.70701 5.83418 5.85245 5.94550 6.20304 6.27041 6.48446 6.89592 7.37903 7.96721 8.87482 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026603 B = 0.004361 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.263336 B = 6418.969434 C = 6860.061200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.025 3.975 3 N -0.251 5.251 4 N -0.653 5.653 5 C 0.310 3.690 6 H -0.005 1.005 7 C -0.133 4.133 8 C -0.548 4.548 9 H 0.057 0.943 10 C 0.020 3.980 11 N -0.914 5.914 12 Si 0.968 3.032 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.268 1.268 16 C 0.022 3.978 17 H 0.115 0.885 18 C -0.128 4.128 19 C -0.073 4.073 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.116 4.116 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.370 0.630 29 H 0.016 0.984 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.266 0.734 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.409 -20.146 2.052 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 N -0.059 5.059 4 N -0.392 5.392 5 C 0.206 3.794 6 H 0.013 0.987 7 C -0.193 4.193 8 C -0.587 4.587 9 H 0.075 0.925 10 C -0.181 4.181 11 N -0.553 5.553 12 Si 0.793 3.207 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.193 1.193 16 C 0.002 3.998 17 H 0.133 0.867 18 C -0.185 4.185 19 C -0.074 4.074 20 C -0.145 4.145 21 C -0.152 4.152 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.134 4.134 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.063 0.937 28 H 0.208 0.792 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.142 0.858 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.239 -19.393 2.022 19.765 hybrid contribution -1.281 1.162 0.491 1.798 sum -4.520 -18.231 2.513 18.950 Atomic orbital electron populations 1.21052 0.92782 1.02709 1.02875 1.24555 0.94346 0.93133 1.04913 1.73529 1.29248 0.93314 1.09833 1.48450 1.05502 1.00237 1.84975 1.17990 0.90910 0.78300 0.92179 0.98679 1.22001 0.98811 1.00550 0.97937 1.21500 1.04658 0.95251 1.37281 0.92528 1.25697 0.96129 1.00252 0.95988 1.70012 1.18795 1.20862 1.45591 0.85461 0.78683 0.77732 0.78825 1.19929 1.20479 1.19269 1.18875 0.94917 0.89983 0.96008 0.86708 1.21595 0.94202 1.01176 1.01541 1.19742 0.98847 0.95186 0.93659 1.21046 1.00615 0.99391 0.93441 1.21321 0.99906 0.96096 0.97851 1.21430 0.98827 0.95062 0.99336 1.21478 0.99615 1.00833 0.91966 1.21344 0.98541 0.93653 0.99842 0.90189 0.89496 0.93683 0.79204 0.96444 0.95372 0.91471 0.92435 0.94327 0.90893 0.93117 0.88901 0.85833 0.84090 0.83298 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.46 71.24 0.67 -3.12 16 2 C 0.03 0.82 6.08 46.53 0.28 1.10 16 3 N -0.25 -10.51 10.17 -41.20 -0.42 -10.93 16 4 N -0.65 -30.56 5.93 -172.53 -1.02 -31.58 16 5 C 0.31 16.88 3.23 44.24 0.14 17.02 16 6 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 7 C -0.13 -6.96 9.29 71.98 0.67 -6.29 16 8 C -0.55 -30.83 8.74 25.60 0.22 -30.61 16 9 H 0.06 3.11 7.79 -2.91 -0.02 3.08 16 10 C 0.02 1.08 5.30 84.66 0.45 1.53 16 11 N -0.91 -52.96 11.32 21.45 0.24 -52.72 16 12 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 16 C 0.02 0.58 2.85 -12.29 -0.04 0.54 16 17 H 0.12 2.28 7.88 -2.38 -0.02 2.26 16 18 C -0.13 -3.54 8.24 71.98 0.59 -2.94 16 19 C -0.07 -1.77 4.26 -19.87 -0.08 -1.85 16 20 C -0.13 -3.53 8.82 22.27 0.20 -3.34 16 21 C -0.13 -3.15 10.05 22.27 0.22 -2.93 16 22 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 23 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 24 C -0.12 -2.14 9.67 22.27 0.22 -1.92 16 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.09 2.06 7.67 -2.39 -0.02 2.04 16 27 H 0.04 1.43 6.31 -2.39 -0.02 1.42 16 28 H 0.37 16.27 6.31 -213.31 -1.35 14.92 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 32 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.04 1.25 7.23 -2.38 -0.02 1.23 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.50 8.12 -2.39 -0.02 1.48 16 36 H 0.09 3.10 7.56 -2.91 -0.02 3.08 16 37 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 38 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.15 1.90 7.95 -2.91 -0.02 1.87 16 Total: -1.00 -64.31 330.45 4.49 -59.82 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -0.33 Total: 26.63 kcal Atomic # 6 Polarization: -40.76 SS G_CDS: 4.00 Total: -36.76 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -1.20 Total: -95.23 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -64.31 4.49 -59.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.813 kcal (2) G-P(sol) polarization free energy of solvation -64.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds