Wall clock time and date at job start Mon Mar 30 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.28012 * 119.99986 * 2 1 4 4 N 1.40105 * 119.99605 * 0.02562 * 3 2 1 5 5 C 1.46499 * 119.99713 * 179.72142 * 4 3 2 6 6 H 1.09003 * 109.47332 * 330.27237 * 5 4 3 7 7 C 1.53000 * 109.47458 * 90.27596 * 5 4 3 8 8 C 1.50699 * 109.47250 * 210.27693 * 5 4 3 9 9 H 1.08002 * 120.00000 * 0.02562 * 8 5 4 10 10 C 1.37884 * 120.00427 * 179.97438 * 8 5 4 11 11 N 1.31512 * 120.00055 * 179.97438 * 10 8 5 12 12 Si 1.86806 * 119.99670 * 0.02562 * 10 8 5 13 13 H 1.48496 * 109.46829 * 89.99476 * 12 10 8 14 14 H 1.48490 * 109.46674 * 209.99919 * 12 10 8 15 15 H 1.48502 * 109.46636 * 329.99890 * 12 10 8 16 16 C 1.50693 * 120.00442 * 180.02562 * 2 1 3 17 17 H 1.09007 * 109.46855 * 304.99991 * 16 2 1 18 18 C 1.53002 * 109.47579 * 185.00150 * 16 2 1 19 19 C 1.50702 * 109.47479 * 64.99701 * 16 2 1 20 20 C 1.38234 * 119.99645 * 59.72628 * 19 16 2 21 21 C 1.38241 * 119.99794 * 179.78520 * 20 19 16 22 22 C 1.38236 * 119.99849 * 0.45184 * 21 20 19 23 23 C 1.38235 * 120.00160 * 359.80307 * 22 21 20 24 24 C 1.38234 * 119.99949 * 240.00609 * 19 16 2 25 25 H 1.09007 * 109.47060 * 89.99837 * 1 2 3 26 26 H 1.08997 * 109.47017 * 209.99387 * 1 2 3 27 27 H 1.08998 * 109.47340 * 330.00110 * 1 2 3 28 28 H 0.97001 * 120.00437 * 0.02562 * 4 3 2 29 29 H 1.09003 * 109.46606 * 300.00280 * 7 5 4 30 30 H 1.08998 * 109.46704 * 59.99690 * 7 5 4 31 31 H 1.08996 * 109.47205 * 180.02562 * 7 5 4 32 32 H 0.96998 * 119.99950 * 180.02562 * 11 10 8 33 33 H 1.08994 * 109.47486 * 179.97438 * 18 16 2 34 34 H 1.08997 * 109.46593 * 300.00211 * 18 16 2 35 35 H 1.09002 * 109.46944 * 59.99645 * 18 16 2 36 36 H 1.08002 * 120.00155 * 0.02562 * 20 19 16 37 37 H 1.08000 * 119.99852 * 180.27573 * 21 20 19 38 38 H 1.08001 * 119.99695 * 179.83200 * 22 21 20 39 39 H 1.07995 * 120.00393 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.00288 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1086 0.0000 4 7 1.4464 2.3219 0.0005 5 6 2.1789 3.5906 0.0067 6 1 3.1315 3.4578 0.5196 7 6 2.4334 4.0397 -1.4336 8 6 1.3647 4.6373 0.7227 9 1 0.3984 4.3827 1.1326 10 6 1.8537 5.9196 0.8555 11 7 1.1429 6.8331 1.4799 12 14 3.5253 6.3597 0.1472 13 1 3.3614 6.8329 -1.2508 14 1 4.1417 7.4351 0.9649 15 1 4.4013 5.1608 0.1645 16 6 2.2605 -1.3050 -0.0006 17 1 1.9317 -1.9148 0.8410 18 6 3.7600 -1.0282 0.1253 19 6 1.9917 -2.0398 -1.2886 20 6 2.3217 -1.4577 -2.4982 21 6 2.0792 -2.1336 -3.6794 22 6 1.4982 -3.3876 -3.6515 23 6 1.1634 -3.9675 -2.4421 24 6 1.4099 -3.2934 -1.2606 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8900 0.5138 28 1 0.4764 2.3219 0.0013 29 1 3.0223 3.2826 -1.9514 30 1 1.4808 4.1725 -1.9464 31 1 2.9787 4.9834 -1.4290 32 1 1.4868 7.7353 1.5730 33 1 4.3050 -1.9721 0.1253 34 1 4.0887 -0.4184 -0.7162 35 1 3.9544 -0.4968 1.0569 36 1 2.7725 -0.4765 -2.5201 37 1 2.3412 -1.6807 -4.6243 38 1 1.3063 -3.9145 -4.5745 39 1 0.7099 -4.9473 -2.4202 40 1 1.1483 -3.7464 -0.3158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771882527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:15 Heat of formation + Delta-G solvation = 62.210029 kcal Electronic energy + Delta-G solvation = -19113.225231 eV Core-core repulsion = 16314.705373 eV Total energy + Delta-G solvation = -2798.519858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.55782 -37.39544 -35.13701 -33.23368 -31.51920 -30.89832 -29.35006 -28.95884 -26.80780 -25.04484 -24.00732 -22.53221 -21.49565 -20.24466 -18.73684 -16.97694 -16.55017 -15.63732 -15.42781 -15.13892 -14.85623 -14.20236 -13.97654 -13.43976 -13.29801 -13.15641 -12.92175 -12.73395 -12.31040 -12.11677 -12.02920 -11.98928 -11.48712 -11.42567 -11.18651 -10.87617 -10.81570 -10.63943 -10.38936 -10.12893 -9.61856 -9.40503 -9.11845 -8.91285 -8.67447 -8.65406 -6.98136 -6.17669 -4.19103 1.35849 1.41089 2.88378 3.23734 3.34655 3.37162 3.71087 3.94646 4.32644 4.79097 4.83158 4.98702 5.03486 5.16694 5.17133 5.41003 5.45745 5.51571 5.61610 5.65637 5.84100 5.86113 5.97927 6.00594 6.09906 6.19481 6.33942 6.34837 6.42299 6.48037 6.53723 6.54981 6.63418 6.74007 6.81302 7.01024 7.10002 7.42857 7.59250 8.10058 8.47855 8.83655 9.34089 9.44849 10.95074 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033579 B = 0.004317 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.655132 B = 6484.346268 C = 6662.888841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.004 3.996 3 N -0.210 5.210 4 N -0.632 5.632 5 C 0.273 3.727 6 H 0.039 0.961 7 C -0.163 4.163 8 C -0.531 4.531 9 H 0.077 0.923 10 C 0.077 3.923 11 N -0.895 5.895 12 Si 0.890 3.110 13 H -0.277 1.277 14 H -0.295 1.295 15 H -0.264 1.264 16 C 0.021 3.979 17 H 0.085 0.915 18 C -0.132 4.132 19 C -0.061 4.061 20 C -0.104 4.104 21 C -0.121 4.121 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.118 4.118 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.374 0.626 29 H 0.032 0.968 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.267 0.733 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 -19.845 -7.247 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.190 4.190 3 N -0.020 5.020 4 N -0.370 5.370 5 C 0.169 3.831 6 H 0.056 0.944 7 C -0.222 4.222 8 C -0.570 4.570 9 H 0.095 0.905 10 C -0.127 4.127 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.204 1.204 14 H -0.223 1.223 15 H -0.189 1.189 16 C 0.001 3.999 17 H 0.103 0.897 18 C -0.190 4.190 19 C -0.063 4.063 20 C -0.122 4.122 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.136 4.136 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.213 0.787 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.557 -19.053 -7.167 20.517 hybrid contribution -0.534 0.288 -0.452 0.757 sum 2.023 -18.765 -7.620 20.354 Atomic orbital electron populations 1.20998 0.94019 1.02452 1.01958 1.23744 0.92999 0.92795 1.09447 1.73422 1.28706 0.93114 1.06725 1.48472 1.05962 0.99651 1.82876 1.18758 0.93426 0.79303 0.91618 0.94359 1.22575 1.00279 0.98935 1.00368 1.21101 1.05873 0.93585 1.36422 0.90540 1.24835 0.97323 0.95905 0.94598 1.69873 1.37892 1.03440 1.42044 0.86820 0.84634 0.78245 0.78341 1.20407 1.22256 1.18866 1.18743 0.95724 0.91184 0.94295 0.89662 1.21656 0.93282 1.00698 1.03323 1.19830 0.97490 0.94125 0.94817 1.21094 0.99297 0.99919 0.91876 1.21148 0.99469 0.95169 0.98127 1.21091 1.00009 0.95870 0.97771 1.21077 1.00624 0.99799 0.92629 1.21058 0.99598 0.94762 0.98195 0.91843 0.91694 0.91876 0.78731 0.94914 0.93100 0.93770 0.92349 0.93207 0.91873 0.91787 0.85957 0.86395 0.86556 0.86415 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.31 36.00 0.34 -1.59 16 2 C 0.00 0.06 6.07 -78.92 -0.48 -0.42 16 3 N -0.21 -4.00 10.17 35.60 0.36 -3.64 16 4 N -0.63 -13.56 5.93 -5.88 -0.03 -13.60 16 5 C 0.27 6.63 2.82 -69.08 -0.20 6.44 16 6 H 0.04 0.99 7.20 -51.93 -0.37 0.61 16 7 C -0.16 -3.66 9.00 37.16 0.33 -3.32 16 8 C -0.53 -14.79 9.32 -34.44 -0.32 -15.11 16 9 H 0.08 2.29 8.03 -52.49 -0.42 1.87 16 10 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 11 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 12 Si 0.89 21.76 24.37 -169.99 -4.14 17.61 16 13 H -0.28 -6.58 6.87 56.52 0.39 -6.20 16 14 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.26 -6.25 6.53 56.52 0.37 -5.89 16 16 C 0.02 0.27 2.84 -92.92 -0.26 0.01 16 17 H 0.09 0.95 7.88 -51.92 -0.41 0.54 16 18 C -0.13 -1.71 8.25 37.16 0.31 -1.41 16 19 C -0.06 -0.75 4.59 -104.62 -0.48 -1.23 16 20 C -0.10 -1.32 8.81 -39.58 -0.35 -1.67 16 21 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 22 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 23 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.24 9.67 -39.58 -0.38 -1.63 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 27 H 0.06 0.98 6.31 -51.93 -0.33 0.65 16 28 H 0.37 7.76 6.31 -182.59 -1.15 6.60 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 32 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.89 7.26 -51.93 -0.38 0.51 16 35 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 36 H 0.12 1.70 7.59 -52.49 -0.40 1.30 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 1.03 7.95 -52.49 -0.42 0.62 16 LS Contribution 324.29 15.07 4.89 4.89 Total: -1.00 -29.98 324.29 -7.97 -37.95 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.03 Total: 5.87 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -2.79 Total: -22.91 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 1.10 Total: -43.41 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.14 Total: 17.61 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.98 -7.97 -37.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.161 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds