Wall clock time and date at job start Mon Mar 30 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.28012 * 119.99986 * 2 1 4 4 N 1.40105 * 119.99605 * 0.02562 * 3 2 1 5 5 C 1.46499 * 119.99713 * 179.72142 * 4 3 2 6 6 H 1.09003 * 109.47332 * 330.27237 * 5 4 3 7 7 C 1.53000 * 109.47458 * 90.27596 * 5 4 3 8 8 C 1.50699 * 109.47250 * 210.27693 * 5 4 3 9 9 H 1.08002 * 120.00000 * 0.02562 * 8 5 4 10 10 C 1.37884 * 120.00427 * 179.97438 * 8 5 4 11 11 N 1.31512 * 120.00055 * 179.97438 * 10 8 5 12 12 Si 1.86806 * 119.99670 * 0.02562 * 10 8 5 13 13 H 1.48496 * 109.46829 * 89.99476 * 12 10 8 14 14 H 1.48490 * 109.46674 * 209.99919 * 12 10 8 15 15 H 1.48502 * 109.46636 * 329.99890 * 12 10 8 16 16 C 1.50693 * 120.00442 * 180.02562 * 2 1 3 17 17 H 1.09007 * 109.46855 * 304.99991 * 16 2 1 18 18 C 1.53002 * 109.47579 * 185.00150 * 16 2 1 19 19 C 1.50702 * 109.47479 * 64.99701 * 16 2 1 20 20 C 1.38234 * 119.99645 * 59.72628 * 19 16 2 21 21 C 1.38241 * 119.99794 * 179.78520 * 20 19 16 22 22 C 1.38236 * 119.99849 * 0.45184 * 21 20 19 23 23 C 1.38235 * 120.00160 * 359.80307 * 22 21 20 24 24 C 1.38234 * 119.99949 * 240.00609 * 19 16 2 25 25 H 1.09007 * 109.47060 * 89.99837 * 1 2 3 26 26 H 1.08997 * 109.47017 * 209.99387 * 1 2 3 27 27 H 1.08998 * 109.47340 * 330.00110 * 1 2 3 28 28 H 0.97001 * 120.00437 * 0.02562 * 4 3 2 29 29 H 1.09003 * 109.46606 * 300.00280 * 7 5 4 30 30 H 1.08998 * 109.46704 * 59.99690 * 7 5 4 31 31 H 1.08996 * 109.47205 * 180.02562 * 7 5 4 32 32 H 0.96998 * 119.99950 * 180.02562 * 11 10 8 33 33 H 1.08994 * 109.47486 * 179.97438 * 18 16 2 34 34 H 1.08997 * 109.46593 * 300.00211 * 18 16 2 35 35 H 1.09002 * 109.46944 * 59.99645 * 18 16 2 36 36 H 1.08002 * 120.00155 * 0.02562 * 20 19 16 37 37 H 1.08000 * 119.99852 * 180.27573 * 21 20 19 38 38 H 1.08001 * 119.99695 * 179.83200 * 22 21 20 39 39 H 1.07995 * 120.00393 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.00288 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1086 0.0000 4 7 1.4464 2.3219 0.0005 5 6 2.1789 3.5906 0.0067 6 1 3.1315 3.4578 0.5196 7 6 2.4334 4.0397 -1.4336 8 6 1.3647 4.6373 0.7227 9 1 0.3984 4.3827 1.1326 10 6 1.8537 5.9196 0.8555 11 7 1.1429 6.8331 1.4799 12 14 3.5253 6.3597 0.1472 13 1 3.3614 6.8329 -1.2508 14 1 4.1417 7.4351 0.9649 15 1 4.4013 5.1608 0.1645 16 6 2.2605 -1.3050 -0.0006 17 1 1.9317 -1.9148 0.8410 18 6 3.7600 -1.0282 0.1253 19 6 1.9917 -2.0398 -1.2886 20 6 2.3217 -1.4577 -2.4982 21 6 2.0792 -2.1336 -3.6794 22 6 1.4982 -3.3876 -3.6515 23 6 1.1634 -3.9675 -2.4421 24 6 1.4099 -3.2934 -1.2606 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8900 0.5138 28 1 0.4764 2.3219 0.0013 29 1 3.0223 3.2826 -1.9514 30 1 1.4808 4.1725 -1.9464 31 1 2.9787 4.9834 -1.4290 32 1 1.4868 7.7353 1.5730 33 1 4.3050 -1.9721 0.1253 34 1 4.0887 -0.4184 -0.7162 35 1 3.9544 -0.4968 1.0569 36 1 2.7725 -0.4765 -2.5201 37 1 2.3412 -1.6807 -4.6243 38 1 1.3063 -3.9145 -4.5745 39 1 0.7099 -4.9473 -2.4202 40 1 1.1483 -3.7464 -0.3158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771882527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:15 Heat of formation + Delta-G solvation = 44.839692 kcal Electronic energy + Delta-G solvation = -19113.978466 eV Core-core repulsion = 16314.705373 eV Total energy + Delta-G solvation = -2799.273093 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47638 -38.71738 -36.73643 -34.77166 -33.35365 -31.70677 -30.50337 -30.17101 -28.28176 -27.11577 -25.03186 -23.37089 -22.77310 -21.79532 -20.17353 -18.63246 -17.69400 -17.34288 -16.61301 -16.29336 -16.07576 -15.55330 -15.14764 -14.87536 -14.82815 -14.27960 -14.11695 -14.06771 -13.73967 -13.66751 -13.40482 -13.21367 -12.91416 -12.71811 -12.44424 -12.27109 -12.16491 -11.95923 -11.65867 -11.61384 -11.49781 -11.25803 -10.81745 -10.70431 -9.72781 -9.53543 -8.57194 -8.37170 -6.43720 0.51903 0.59166 1.29282 1.35652 1.46328 1.56877 2.26902 2.29887 2.98094 2.99140 3.75342 3.91726 4.12314 4.23625 4.24777 4.36839 4.42342 4.48185 4.54666 4.58492 4.67947 4.71267 4.74016 4.78189 4.81445 4.93264 5.01489 5.10016 5.23077 5.24370 5.29677 5.35921 5.42797 5.52222 5.67329 5.71348 5.82638 5.86625 6.13417 6.21560 6.53335 6.67314 7.23650 7.86578 8.78949 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033579 B = 0.004317 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.655132 B = 6484.346268 C = 6662.888841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.034 3.966 3 N -0.248 5.248 4 N -0.650 5.650 5 C 0.283 3.717 6 H 0.023 0.977 7 C -0.155 4.155 8 C -0.536 4.536 9 H 0.039 0.961 10 C 0.023 3.977 11 N -0.941 5.941 12 Si 0.951 3.049 13 H -0.261 1.261 14 H -0.292 1.292 15 H -0.252 1.252 16 C 0.021 3.979 17 H 0.113 0.887 18 C -0.129 4.129 19 C -0.073 4.073 20 C -0.125 4.125 21 C -0.133 4.133 22 C -0.130 4.130 23 C -0.123 4.123 24 C -0.117 4.117 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.372 0.628 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.270 0.730 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.051 -22.837 -8.402 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 N -0.056 5.056 4 N -0.388 5.388 5 C 0.177 3.823 6 H 0.041 0.959 7 C -0.213 4.213 8 C -0.575 4.575 9 H 0.057 0.943 10 C -0.176 4.176 11 N -0.580 5.580 12 Si 0.777 3.223 13 H -0.187 1.187 14 H -0.220 1.220 15 H -0.176 1.176 16 C 0.001 3.999 17 H 0.130 0.870 18 C -0.186 4.186 19 C -0.074 4.074 20 C -0.143 4.143 21 C -0.151 4.151 22 C -0.148 4.148 23 C -0.141 4.141 24 C -0.135 4.135 25 H 0.087 0.913 26 H 0.113 0.887 27 H 0.065 0.935 28 H 0.210 0.790 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.066 -22.068 -8.332 23.787 hybrid contribution -0.811 0.965 -0.084 1.263 sum 2.255 -21.103 -8.416 22.831 Atomic orbital electron populations 1.21057 0.92900 1.03116 1.02497 1.24562 0.94282 0.93152 1.04080 1.73503 1.28758 0.92987 1.10312 1.48138 1.05556 0.99966 1.85156 1.18390 0.92066 0.79837 0.92009 0.95890 1.22443 1.00522 0.99172 0.99189 1.21346 1.04833 0.94932 1.36357 0.94305 1.25679 1.01239 0.95733 0.94905 1.70006 1.40071 1.04068 1.43846 0.85827 0.79926 0.78292 0.78245 1.18714 1.21974 1.17650 1.18900 0.95137 0.89794 0.96072 0.86950 1.21610 0.93903 1.01332 1.01764 1.19719 0.98885 0.95053 0.93716 1.21056 1.00578 0.99528 0.93130 1.21332 0.99796 0.95925 0.97997 1.21430 0.98882 0.95276 0.99180 1.21460 0.99717 1.00791 0.92088 1.21333 0.98567 0.93907 0.99713 0.91292 0.88659 0.93498 0.78958 0.93140 0.93145 0.94046 0.92075 0.90970 0.93668 0.93141 0.88205 0.85560 0.84227 0.83604 0.83802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.31 71.23 0.66 -3.05 16 2 C 0.03 1.03 6.07 46.53 0.28 1.32 16 3 N -0.25 -9.53 10.17 -41.21 -0.42 -9.95 16 4 N -0.65 -28.66 5.93 -172.52 -1.02 -29.68 16 5 C 0.28 13.98 2.82 44.25 0.12 14.10 16 6 H 0.02 1.21 7.20 -2.39 -0.02 1.19 16 7 C -0.15 -6.88 9.00 71.98 0.65 -6.23 16 8 C -0.54 -30.95 9.32 25.60 0.24 -30.71 16 9 H 0.04 2.46 8.03 -2.91 -0.02 2.44 16 10 C 0.02 1.36 5.45 84.66 0.46 1.82 16 11 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 12 Si 0.95 45.04 24.37 68.60 1.67 46.72 16 13 H -0.26 -11.67 6.87 99.48 0.68 -10.98 16 14 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 15 H -0.25 -11.41 6.53 99.48 0.65 -10.76 16 16 C 0.02 0.50 2.84 -12.29 -0.03 0.47 16 17 H 0.11 2.10 7.88 -2.38 -0.02 2.08 16 18 C -0.13 -3.20 8.25 71.98 0.59 -2.60 16 19 C -0.07 -1.59 4.59 -19.87 -0.09 -1.68 16 20 C -0.12 -3.05 8.81 22.27 0.20 -2.85 16 21 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 22 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 23 C -0.12 -1.90 10.05 22.27 0.22 -1.67 16 24 C -0.12 -2.02 9.67 22.27 0.22 -1.80 16 25 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 26 H 0.09 2.01 8.12 -2.39 -0.02 1.99 16 27 H 0.05 1.45 6.31 -2.39 -0.02 1.44 16 28 H 0.37 16.04 6.31 -213.32 -1.35 14.70 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.04 1.84 3.27 -2.39 -0.01 1.83 16 32 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.27 7.26 -2.39 -0.02 1.26 16 35 H 0.05 1.37 8.12 -2.39 -0.02 1.35 16 36 H 0.10 2.83 7.59 -2.91 -0.02 2.81 16 37 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 39 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.14 1.76 7.95 -2.91 -0.02 1.73 16 Total: -1.00 -66.67 324.29 4.09 -62.58 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -0.41 Total: 25.71 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 3.97 Total: -37.38 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -1.14 Total: -97.63 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.67 Total: 46.72 kcal Total: -66.67 4.09 -62.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.424 kcal (2) G-P(sol) polarization free energy of solvation -66.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds