Wall clock time and date at job start Mon Mar 30 2020 06:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28017 * 119.99689 * 2 1 4 4 N 1.40098 * 119.99928 * 0.02562 * 3 2 1 5 5 C 1.46500 * 120.00048 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46845 * 30.00557 * 5 4 3 7 7 C 1.52997 * 109.47473 * 270.00008 * 5 4 3 8 8 C 1.50706 * 109.47187 * 149.99611 * 5 4 3 9 9 H 1.07998 * 119.99629 * 0.02562 * 8 5 4 10 10 C 1.37875 * 119.99955 * 179.97438 * 8 5 4 11 11 N 1.31510 * 120.00308 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 119.99908 * 180.02562 * 10 8 5 13 13 H 1.48507 * 109.46754 * 90.00468 * 12 10 8 14 14 H 1.48498 * 109.47278 * 210.00299 * 12 10 8 15 15 H 1.48498 * 109.47109 * 330.00728 * 12 10 8 16 16 C 1.50693 * 120.00328 * 180.02562 * 2 1 3 17 17 H 1.08995 * 109.47261 * 55.00129 * 16 2 1 18 18 C 1.53003 * 109.47156 * 175.00100 * 16 2 1 19 19 C 1.50700 * 109.47238 * 294.99909 * 16 2 1 20 20 C 1.38238 * 119.99927 * 299.72935 * 19 16 2 21 21 C 1.38240 * 119.99501 * 179.80645 * 20 19 16 22 22 C 1.38228 * 120.00239 * 0.39771 * 21 20 19 23 23 C 1.38239 * 120.00252 * 359.85736 * 22 21 20 24 24 C 1.38233 * 119.99808 * 120.00145 * 19 16 2 25 25 H 1.08996 * 109.46874 * 90.00102 * 1 2 3 26 26 H 1.09001 * 109.46766 * 209.99712 * 1 2 3 27 27 H 1.08994 * 109.47174 * 329.99752 * 1 2 3 28 28 H 0.97002 * 120.00235 * 359.97438 * 4 3 2 29 29 H 1.09002 * 109.47153 * 59.99757 * 7 5 4 30 30 H 1.09001 * 109.46832 * 299.99948 * 7 5 4 31 31 H 1.09004 * 109.47261 * 179.97438 * 7 5 4 32 32 H 0.96998 * 120.00365 * 179.97438 * 11 10 8 33 33 H 1.08997 * 109.47111 * 300.00043 * 18 16 2 34 34 H 1.09005 * 109.47098 * 59.99767 * 18 16 2 35 35 H 1.08996 * 109.47402 * 179.97438 * 18 16 2 36 36 H 1.07994 * 119.99771 * 359.97438 * 20 19 16 37 37 H 1.08000 * 119.99479 * 180.23166 * 21 20 19 38 38 H 1.08002 * 120.00173 * 179.83071 * 22 21 20 39 39 H 1.07991 * 120.00546 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00259 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1087 0.0000 4 7 1.4465 2.3219 0.0005 5 6 2.1789 3.5907 0.0011 6 1 3.1312 3.4607 -0.5129 7 6 2.4339 4.0318 1.4437 8 6 1.3644 4.6413 -0.7089 9 1 0.3977 4.3891 -1.1192 10 6 1.8529 5.9245 -0.8339 11 7 3.0298 6.2317 -0.3339 12 14 0.8430 7.2268 -1.7133 13 1 -0.0308 7.9209 -0.7335 14 1 1.7530 8.2125 -2.3502 15 1 0.0039 6.5824 -2.7554 16 6 2.2606 -1.3050 -0.0006 17 1 1.9318 -1.9140 -0.8426 18 6 3.7601 -1.0280 -0.1262 19 6 1.9918 -2.0409 1.2868 20 6 2.3322 -1.4646 2.4963 21 6 2.0819 -2.1380 3.6774 22 6 1.4989 -3.3910 3.6485 23 6 1.1634 -3.9695 2.4387 24 6 1.4101 -3.2945 1.2578 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 0.4765 2.3219 0.0005 29 1 3.0230 3.2720 1.9573 30 1 1.4814 4.1619 1.9576 31 1 2.9792 4.9756 1.4441 32 1 3.3737 7.1344 -0.4221 33 1 3.9545 -0.4958 -1.0573 34 1 4.0888 -0.4190 0.7160 35 1 4.3052 -1.9719 -0.1261 36 1 2.7910 -0.4872 2.5187 37 1 2.3444 -1.6861 4.6226 38 1 1.3059 -3.9182 4.5711 39 1 0.7083 -4.9486 2.4160 40 1 1.1478 -3.7464 0.3126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771882530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:19 Heat of formation + Delta-G solvation = 53.661935 kcal Electronic energy + Delta-G solvation = -19045.201233 eV Core-core repulsion = 16246.310702 eV Total energy + Delta-G solvation = -2798.890531 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.49436 -37.25325 -34.94165 -33.21983 -31.11437 -30.83791 -29.19889 -28.61848 -26.40230 -25.14181 -23.92068 -22.46655 -21.40593 -20.17439 -18.54773 -16.89606 -16.41078 -15.35712 -15.22452 -15.08710 -14.78290 -14.17380 -13.90478 -13.34187 -13.26108 -12.97147 -12.72756 -12.53460 -12.08419 -11.92825 -11.87270 -11.41576 -11.29350 -11.10679 -11.03344 -10.81351 -10.75422 -10.60387 -10.29893 -10.17252 -9.99317 -9.30274 -8.94976 -8.85506 -8.58308 -8.47908 -6.79206 -6.10251 -4.17971 1.41762 1.46868 3.02118 3.25471 3.32016 3.34884 3.80168 4.06402 4.41448 4.86632 4.90458 5.04349 5.10711 5.21985 5.24522 5.49323 5.54263 5.58440 5.67521 5.72741 5.90169 5.94175 6.06388 6.07566 6.16744 6.27964 6.49476 6.54057 6.54881 6.62643 6.81489 6.82693 7.04554 7.05945 7.17803 7.23613 7.62994 7.85286 7.92916 8.23972 8.40987 8.91933 9.48463 9.53146 10.95601 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.036080 B = 0.004011 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.862174 B = 6979.797681 C = 7111.200661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.008 4.008 3 N -0.203 5.203 4 N -0.637 5.637 5 C 0.299 3.701 6 H 0.039 0.961 7 C -0.149 4.149 8 C -0.528 4.528 9 H 0.058 0.942 10 C 0.066 3.934 11 N -0.887 5.887 12 Si 0.901 3.099 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.022 3.978 17 H 0.083 0.917 18 C -0.132 4.132 19 C -0.061 4.061 20 C -0.103 4.103 21 C -0.121 4.121 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.120 4.120 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.367 0.633 29 H 0.011 0.989 30 H 0.023 0.977 31 H 0.088 0.912 32 H 0.263 0.737 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 -17.579 4.390 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.201 4.201 3 N -0.014 5.014 4 N -0.375 5.375 5 C 0.197 3.803 6 H 0.057 0.943 7 C -0.208 4.208 8 C -0.567 4.567 9 H 0.076 0.924 10 C -0.136 4.136 11 N -0.525 5.525 12 Si 0.728 3.272 13 H -0.206 1.206 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.002 3.998 17 H 0.101 0.899 18 C -0.189 4.189 19 C -0.062 4.062 20 C -0.121 4.121 21 C -0.139 4.139 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.138 4.138 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.205 0.795 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.414 -16.814 4.392 17.436 hybrid contribution -1.847 0.619 -0.329 1.975 sum -3.260 -16.196 4.063 17.013 Atomic orbital electron populations 1.20980 0.94313 1.02246 1.01744 1.23683 0.92783 0.92885 1.10761 1.73441 1.28802 0.93210 1.05954 1.48932 1.05858 1.00219 1.82475 1.18425 0.92627 0.76651 0.92604 0.94313 1.22197 0.98998 1.01608 0.98024 1.21262 1.04460 0.94451 1.36557 0.92380 1.24850 0.95104 0.98211 0.95475 1.69891 1.17411 1.20205 1.44957 0.86460 0.79848 0.81153 0.79725 1.20583 1.21042 1.19917 1.18702 0.95728 0.91277 0.94094 0.89876 1.21649 0.93261 1.00598 1.03396 1.19858 0.97339 0.94090 0.94940 1.21116 0.99110 0.99986 0.91855 1.21152 0.99425 0.95166 0.98159 1.21083 1.00118 0.95881 0.97735 1.21066 1.00715 0.99781 0.92646 1.21059 0.99783 0.94759 0.98162 0.91906 0.91820 0.92248 0.79524 0.97027 0.95759 0.89372 0.92655 0.91807 0.91806 0.93322 0.85861 0.86382 0.86593 0.86473 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.46 36.01 0.34 -1.65 16 2 C -0.01 -0.13 6.08 -78.91 -0.48 -0.61 16 3 N -0.20 -4.12 10.17 35.60 0.36 -3.75 16 4 N -0.64 -14.32 5.93 -5.88 -0.03 -14.36 16 5 C 0.30 7.75 3.23 -69.08 -0.22 7.53 16 6 H 0.04 1.12 8.14 -51.93 -0.42 0.69 16 7 C -0.15 -3.73 9.29 37.16 0.35 -3.39 16 8 C -0.53 -14.42 8.74 -34.44 -0.30 -14.72 16 9 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 10 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 11 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 12 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 C 0.02 0.31 2.85 -92.93 -0.27 0.04 16 17 H 0.08 0.99 7.88 -51.93 -0.41 0.58 16 18 C -0.13 -1.83 8.24 37.16 0.31 -1.52 16 19 C -0.06 -0.79 4.26 -104.62 -0.45 -1.23 16 20 C -0.10 -1.39 8.82 -39.58 -0.35 -1.74 16 21 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 22 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 23 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 24 C -0.12 -1.33 9.67 -39.58 -0.38 -1.71 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.84 7.67 -51.93 -0.40 0.44 16 27 H 0.06 0.95 6.31 -51.93 -0.33 0.62 16 28 H 0.37 7.84 6.31 -182.60 -1.15 6.69 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 34 H 0.06 0.97 7.23 -51.93 -0.38 0.60 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.12 1.85 7.56 -52.49 -0.40 1.45 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.12 1.09 7.95 -52.49 -0.42 0.68 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -28.66 330.45 -8.97 -37.63 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.14 Total: 6.45 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -2.74 Total: -22.58 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.95 Total: -42.47 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.66 -8.97 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.292 kcal (2) G-P(sol) polarization free energy of solvation -28.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds