Wall clock time and date at job start Mon Mar 30 2020 06:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28017 * 119.99689 * 2 1 4 4 N 1.40098 * 119.99928 * 0.02562 * 3 2 1 5 5 C 1.46500 * 120.00048 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46845 * 30.00557 * 5 4 3 7 7 C 1.52997 * 109.47473 * 270.00008 * 5 4 3 8 8 C 1.50706 * 109.47187 * 149.99611 * 5 4 3 9 9 H 1.07998 * 119.99629 * 0.02562 * 8 5 4 10 10 C 1.37875 * 119.99955 * 179.97438 * 8 5 4 11 11 N 1.31510 * 120.00308 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 119.99908 * 180.02562 * 10 8 5 13 13 H 1.48507 * 109.46754 * 90.00468 * 12 10 8 14 14 H 1.48498 * 109.47278 * 210.00299 * 12 10 8 15 15 H 1.48498 * 109.47109 * 330.00728 * 12 10 8 16 16 C 1.50693 * 120.00328 * 180.02562 * 2 1 3 17 17 H 1.08995 * 109.47261 * 55.00129 * 16 2 1 18 18 C 1.53003 * 109.47156 * 175.00100 * 16 2 1 19 19 C 1.50700 * 109.47238 * 294.99909 * 16 2 1 20 20 C 1.38238 * 119.99927 * 299.72935 * 19 16 2 21 21 C 1.38240 * 119.99501 * 179.80645 * 20 19 16 22 22 C 1.38228 * 120.00239 * 0.39771 * 21 20 19 23 23 C 1.38239 * 120.00252 * 359.85736 * 22 21 20 24 24 C 1.38233 * 119.99808 * 120.00145 * 19 16 2 25 25 H 1.08996 * 109.46874 * 90.00102 * 1 2 3 26 26 H 1.09001 * 109.46766 * 209.99712 * 1 2 3 27 27 H 1.08994 * 109.47174 * 329.99752 * 1 2 3 28 28 H 0.97002 * 120.00235 * 359.97438 * 4 3 2 29 29 H 1.09002 * 109.47153 * 59.99757 * 7 5 4 30 30 H 1.09001 * 109.46832 * 299.99948 * 7 5 4 31 31 H 1.09004 * 109.47261 * 179.97438 * 7 5 4 32 32 H 0.96998 * 120.00365 * 179.97438 * 11 10 8 33 33 H 1.08997 * 109.47111 * 300.00043 * 18 16 2 34 34 H 1.09005 * 109.47098 * 59.99767 * 18 16 2 35 35 H 1.08996 * 109.47402 * 179.97438 * 18 16 2 36 36 H 1.07994 * 119.99771 * 359.97438 * 20 19 16 37 37 H 1.08000 * 119.99479 * 180.23166 * 21 20 19 38 38 H 1.08002 * 120.00173 * 179.83071 * 22 21 20 39 39 H 1.07991 * 120.00546 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00259 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1087 0.0000 4 7 1.4465 2.3219 0.0005 5 6 2.1789 3.5907 0.0011 6 1 3.1312 3.4607 -0.5129 7 6 2.4339 4.0318 1.4437 8 6 1.3644 4.6413 -0.7089 9 1 0.3977 4.3891 -1.1192 10 6 1.8529 5.9245 -0.8339 11 7 3.0298 6.2317 -0.3339 12 14 0.8430 7.2268 -1.7133 13 1 -0.0308 7.9209 -0.7335 14 1 1.7530 8.2125 -2.3502 15 1 0.0039 6.5824 -2.7554 16 6 2.2606 -1.3050 -0.0006 17 1 1.9318 -1.9140 -0.8426 18 6 3.7601 -1.0280 -0.1262 19 6 1.9918 -2.0409 1.2868 20 6 2.3322 -1.4646 2.4963 21 6 2.0819 -2.1380 3.6774 22 6 1.4989 -3.3910 3.6485 23 6 1.1634 -3.9695 2.4387 24 6 1.4101 -3.2945 1.2578 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 0.4765 2.3219 0.0005 29 1 3.0230 3.2720 1.9573 30 1 1.4814 4.1619 1.9576 31 1 2.9792 4.9756 1.4441 32 1 3.3737 7.1344 -0.4221 33 1 3.9545 -0.4958 -1.0573 34 1 4.0888 -0.4190 0.7160 35 1 4.3052 -1.9719 -0.1261 36 1 2.7910 -0.4872 2.5187 37 1 2.3444 -1.6861 4.6226 38 1 1.3059 -3.9182 4.5711 39 1 0.7083 -4.9486 2.4160 40 1 1.1478 -3.7464 0.3126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771882530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:18 Heat of formation + Delta-G solvation = 38.953319 kcal Electronic energy + Delta-G solvation = -19045.839047 eV Core-core repulsion = 16246.310702 eV Total energy + Delta-G solvation = -2799.528345 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47867 -38.64478 -36.62982 -34.77582 -32.86861 -31.71390 -30.25773 -30.09884 -28.05459 -27.22708 -25.02416 -23.36760 -22.76301 -21.80187 -20.03757 -18.43785 -17.65304 -17.03203 -16.62669 -16.29619 -16.04935 -15.51602 -14.99646 -14.81319 -14.57375 -14.32297 -14.08208 -13.74654 -13.62192 -13.29657 -13.16390 -12.94261 -12.89708 -12.68304 -12.48133 -12.33991 -12.21096 -12.07619 -11.91275 -11.62715 -11.57484 -11.08523 -10.65406 -10.56097 -9.73461 -9.53565 -8.48858 -8.16906 -6.34184 0.51561 0.58447 1.41566 1.42213 1.52904 1.63211 2.28712 2.53885 2.98777 3.11340 3.77671 3.92979 4.12430 4.24122 4.28251 4.36673 4.45754 4.51536 4.66494 4.71010 4.73901 4.77617 4.81357 4.96226 4.96993 5.08995 5.14096 5.22689 5.23009 5.27422 5.40627 5.47471 5.61765 5.66974 5.70844 5.83703 5.84133 5.94108 6.20479 6.26879 6.48445 6.89762 7.38105 7.96546 8.87822 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.036080 B = 0.004011 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.862174 B = 6979.797681 C = 7111.200661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.025 3.975 3 N -0.251 5.251 4 N -0.653 5.653 5 C 0.310 3.690 6 H -0.003 1.003 7 C -0.133 4.133 8 C -0.547 4.547 9 H 0.058 0.942 10 C 0.019 3.981 11 N -0.915 5.915 12 Si 0.970 3.030 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.269 1.269 16 C 0.022 3.978 17 H 0.113 0.887 18 C -0.128 4.128 19 C -0.073 4.073 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.117 4.117 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.370 0.630 29 H 0.014 0.986 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.266 0.734 33 H 0.048 0.952 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.395 -20.099 4.190 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 N -0.059 5.059 4 N -0.392 5.392 5 C 0.206 3.794 6 H 0.015 0.985 7 C -0.193 4.193 8 C -0.586 4.586 9 H 0.076 0.924 10 C -0.182 4.182 11 N -0.553 5.553 12 Si 0.794 3.206 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.194 1.194 16 C 0.002 3.998 17 H 0.131 0.869 18 C -0.185 4.185 19 C -0.074 4.074 20 C -0.144 4.144 21 C -0.151 4.151 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.135 4.135 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.208 0.792 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.226 -19.352 4.198 20.063 hybrid contribution -1.281 1.149 -0.208 1.733 sum -4.507 -18.202 3.990 19.172 Atomic orbital electron populations 1.21047 0.92787 1.02764 1.02801 1.24548 0.94339 0.93125 1.04923 1.73529 1.29243 0.93310 1.09827 1.48447 1.05503 1.00237 1.84964 1.17997 0.91030 0.78323 0.92054 0.98466 1.22005 0.98691 1.00517 0.98067 1.21537 1.04654 0.95300 1.37094 0.92381 1.25708 0.96133 1.00263 0.96045 1.70019 1.18814 1.20778 1.45735 0.85389 0.78317 0.78252 0.78626 1.19734 1.20598 1.19394 1.18870 0.94917 0.89992 0.96039 0.86896 1.21594 0.94202 1.01180 1.01537 1.19733 0.98863 0.95152 0.93665 1.21043 1.00579 0.99455 0.93340 1.21324 0.99845 0.96046 0.97878 1.21431 0.98829 0.95115 0.99283 1.21471 0.99633 1.00813 0.91986 1.21343 0.98598 0.93708 0.99817 0.90453 0.89407 0.93537 0.79205 0.96663 0.95523 0.91446 0.92453 0.93308 0.94132 0.90898 0.88714 0.85683 0.84079 0.83375 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.46 71.24 0.67 -3.13 16 2 C 0.03 0.83 6.08 46.53 0.28 1.11 16 3 N -0.25 -10.50 10.17 -41.20 -0.42 -10.92 16 4 N -0.65 -30.54 5.93 -172.52 -1.02 -31.56 16 5 C 0.31 16.85 3.23 44.25 0.14 17.00 16 6 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 7 C -0.13 -7.00 9.29 71.98 0.67 -6.33 16 8 C -0.55 -30.68 8.74 25.60 0.22 -30.46 16 9 H 0.06 3.17 7.79 -2.91 -0.02 3.15 16 10 C 0.02 1.03 5.30 84.65 0.45 1.48 16 11 N -0.91 -52.97 11.32 21.45 0.24 -52.73 16 12 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 14 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 C 0.02 0.57 2.85 -12.29 -0.04 0.53 16 17 H 0.11 2.30 7.88 -2.39 -0.02 2.28 16 18 C -0.13 -3.55 8.24 71.98 0.59 -2.96 16 19 C -0.07 -1.74 4.26 -19.87 -0.08 -1.82 16 20 C -0.13 -3.39 8.82 22.27 0.20 -3.20 16 21 C -0.13 -3.01 10.05 22.27 0.22 -2.78 16 22 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 23 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 24 C -0.12 -2.14 9.67 22.27 0.22 -1.92 16 25 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 26 H 0.09 2.07 7.67 -2.39 -0.02 2.05 16 27 H 0.05 1.46 6.31 -2.39 -0.02 1.44 16 28 H 0.37 16.26 6.31 -213.32 -1.35 14.91 16 29 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 3.79 6.07 -2.38 -0.01 3.78 16 32 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.05 1.47 8.12 -2.39 -0.02 1.45 16 34 H 0.04 1.30 7.23 -2.38 -0.02 1.28 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 3.03 7.56 -2.91 -0.02 3.01 16 37 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 39 H 0.15 1.52 8.06 -2.92 -0.02 1.50 16 40 H 0.15 1.90 7.95 -2.91 -0.02 1.87 16 Total: -1.00 -64.09 330.45 4.49 -59.60 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -0.33 Total: 26.50 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 4.00 Total: -36.32 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -1.20 Total: -95.21 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -64.09 4.49 -59.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.557 kcal (2) G-P(sol) polarization free energy of solvation -64.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds