Wall clock time and date at job start Mon Mar 30 2020 07:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99532 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.47362 * 149.99991 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00344 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.46777 * 180.02562 * 10 9 7 12 12 C 1.34801 * 117.00128 * 179.97438 * 11 10 9 13 13 O 1.21565 * 120.00081 * 359.97438 * 12 11 10 14 14 C 1.47083 * 120.00367 * 179.97438 * 12 11 10 15 15 C 1.35232 * 123.15496 * 179.73012 * 14 12 11 16 16 S 1.70932 * 108.85801 * 179.87478 * 15 14 12 17 17 C 1.70759 * 91.15345 * 0.33143 * 16 15 14 18 18 Cl 1.73608 * 124.71418 * 179.83179 * 17 16 15 19 19 N 1.28746 * 110.57648 * 359.80547 * 17 16 15 20 20 H 0.96991 * 119.99886 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 22 22 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 23 23 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 24 24 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 25 25 H 1.08007 * 125.57271 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 8 5.4737 -2.6364 0.0022 12 6 6.0857 -3.8375 0.0028 13 8 5.4237 -4.8571 0.0028 14 6 7.5545 -3.9145 0.0034 15 6 8.2338 -5.0838 0.0093 16 16 9.9100 -4.7490 0.0044 17 6 9.6093 -3.0681 0.0046 18 17 10.8400 -1.8436 0.0047 19 7 8.3432 -2.8349 0.0040 20 1 -0.4849 0.8400 -0.0004 21 1 3.8746 -0.6800 0.8911 22 1 3.8752 -0.6803 -0.8889 23 1 3.6586 -3.1502 -0.8892 24 1 3.6580 -3.1505 0.8908 25 1 7.7898 -6.0684 0.0145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781213833.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:44 Heat of formation + Delta-G solvation = -48.247620 kcal Electronic energy + Delta-G solvation = -14338.827776 eV Core-core repulsion = 11470.620190 eV Total energy + Delta-G solvation = -2868.207586 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.001 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.77387 -39.26942 -37.30815 -36.27983 -33.29700 -31.08999 -30.65995 -26.88615 -25.04146 -23.14864 -20.68646 -20.26166 -19.43434 -17.23534 -16.76217 -16.42471 -16.33763 -15.68127 -15.20753 -14.37529 -14.19463 -13.47886 -13.26334 -12.54728 -12.36583 -12.25063 -11.84477 -11.53412 -11.29557 -10.84837 -10.69396 -10.33956 -10.15880 -10.09475 -9.92723 -9.72357 -9.35739 -9.33754 -8.60573 -6.11599 -4.12820 -0.06612 0.23693 0.94753 1.40999 1.46051 2.97244 3.00360 3.30815 3.37886 3.44214 4.04622 4.41049 4.68153 4.83719 5.22294 5.32017 5.90535 5.95138 6.43728 6.63130 6.82100 7.17303 7.23732 7.63129 7.96922 8.40538 8.89589 9.48169 11.00806 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.004402 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.529930 B = 6359.507385 C = 7294.589461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.081 3.919 11 O -0.336 6.336 12 C 0.539 3.461 13 O -0.501 6.501 14 C 0.046 3.954 15 C -0.220 4.220 16 S 0.286 5.714 17 C 0.043 3.957 18 Cl 0.035 6.965 19 N -0.406 5.406 20 H 0.266 0.734 21 H 0.029 0.971 22 H 0.025 0.975 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.752 -9.429 0.040 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.008 3.992 11 O -0.250 6.250 12 C 0.380 3.620 13 O -0.390 6.390 14 C -0.088 4.088 15 C -0.361 4.361 16 S 0.538 5.462 17 C -0.262 4.262 18 Cl 0.063 6.937 19 N -0.123 5.123 20 H 0.076 0.924 21 H 0.048 0.952 22 H 0.043 0.957 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 25.149 -9.463 0.041 26.871 hybrid contribution -0.709 1.123 -0.022 1.328 sum 24.440 -8.340 0.019 25.824 Atomic orbital electron populations 1.69891 1.06269 1.27217 1.50129 1.24923 0.94764 0.99186 0.94083 0.86760 0.80503 0.83235 0.78808 1.20036 1.21168 1.18643 1.20827 0.88172 0.95059 1.52445 0.90605 1.19633 0.96947 0.89973 0.98121 1.23524 0.71655 1.01994 1.02002 1.86684 1.26388 1.30122 1.81847 1.19632 0.85976 0.82931 0.73485 1.90882 1.65448 1.36352 1.46299 1.19300 0.93326 0.86947 1.09188 1.26878 0.98598 1.04857 1.05808 1.82936 1.01720 0.98078 1.63468 1.27220 0.92974 0.95814 1.10159 1.98449 1.46100 1.52489 1.96688 1.66776 1.01370 1.32097 1.12071 0.92435 0.95223 0.95663 0.91384 0.91370 0.77995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.81 15 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 15 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 15 4 H -0.27 -6.70 7.11 56.52 0.40 -6.29 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 15 7 C -0.53 -15.17 9.66 -34.44 -0.33 -15.50 15 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 15 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 15 10 C 0.08 1.77 5.42 37.16 0.20 1.97 15 11 O -0.34 -6.89 10.16 -40.77 -0.41 -7.30 15 12 C 0.54 9.72 7.94 34.32 0.27 9.99 15 13 O -0.50 -9.56 16.50 -19.32 -0.32 -9.88 15 14 C 0.05 0.67 6.71 -84.54 -0.57 0.10 15 15 C -0.22 -2.20 10.61 29.66 0.31 -1.89 15 16 S 0.29 2.06 22.96 -107.50 -2.47 -0.41 15 17 C 0.04 0.48 7.98 51.47 0.41 0.89 15 18 Cl 0.04 0.33 29.33 -51.86 -1.52 -1.19 15 19 N -0.41 -5.99 10.61 -9.47 -0.10 -6.09 15 20 H 0.27 7.62 8.31 -40.82 -0.34 7.28 15 21 H 0.03 0.74 7.20 -51.93 -0.37 0.36 15 22 H 0.03 0.62 7.57 -51.93 -0.39 0.23 15 23 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 24 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 25 H 0.20 1.60 8.03 -52.48 -0.42 1.18 15 LS Contribution 265.32 15.07 4.00 4.00 Total: -1.00 -32.78 265.32 -6.26 -39.04 By element: Atomic # 1 Polarization: -4.17 SS G_CDS: -1.62 Total: -5.79 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 0.08 Total: -2.76 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.67 Total: -32.90 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.73 Total: -17.18 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.47 Total: -0.41 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.52 Total: -1.19 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.78 -6.26 -39.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781213833.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.205 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds