Wall clock time and date at job start Mon Mar 30 2020 07:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99532 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.47362 * 149.99991 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00344 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.46777 * 180.02562 * 10 9 7 12 12 C 1.34801 * 117.00128 * 179.97438 * 11 10 9 13 13 O 1.21565 * 120.00081 * 359.97438 * 12 11 10 14 14 C 1.47083 * 120.00367 * 179.97438 * 12 11 10 15 15 C 1.35232 * 123.15496 * 179.73012 * 14 12 11 16 16 S 1.70932 * 108.85801 * 179.87478 * 15 14 12 17 17 C 1.70759 * 91.15345 * 0.33143 * 16 15 14 18 18 Cl 1.73608 * 124.71418 * 179.83179 * 17 16 15 19 19 N 1.28746 * 110.57648 * 359.80547 * 17 16 15 20 20 H 0.96991 * 119.99886 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 22 22 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 23 23 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 24 24 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 25 25 H 1.08007 * 125.57271 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 8 5.4737 -2.6364 0.0022 12 6 6.0857 -3.8375 0.0028 13 8 5.4237 -4.8571 0.0028 14 6 7.5545 -3.9145 0.0034 15 6 8.2338 -5.0838 0.0093 16 16 9.9100 -4.7490 0.0044 17 6 9.6093 -3.0681 0.0046 18 17 10.8400 -1.8436 0.0047 19 7 8.3432 -2.8349 0.0040 20 1 -0.4849 0.8400 -0.0004 21 1 3.8746 -0.6800 0.8911 22 1 3.8752 -0.6803 -0.8889 23 1 3.6586 -3.1502 -0.8892 24 1 3.6580 -3.1505 0.8908 25 1 7.7898 -6.0684 0.0145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781213833.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:43 Heat of formation + Delta-G solvation = -70.668716 kcal Electronic energy + Delta-G solvation = -14339.800028 eV Core-core repulsion = 11470.620190 eV Total energy + Delta-G solvation = -2869.179837 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.001 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.94224 -40.47165 -38.08017 -37.78104 -35.42261 -32.86678 -31.84985 -28.17943 -26.64918 -24.38388 -22.64388 -21.35909 -20.49593 -19.09296 -18.08433 -17.77415 -17.65313 -16.87700 -16.31514 -16.28332 -15.14544 -15.10454 -14.96904 -14.40816 -13.42592 -13.31096 -13.14362 -13.00308 -12.63290 -12.54574 -12.52769 -11.87504 -11.82970 -11.56618 -11.50172 -11.12864 -10.92989 -10.83325 -10.14715 -8.36580 -6.44351 -0.88945 -0.47338 0.13991 0.36756 0.65104 1.35960 1.37247 1.50613 1.65285 1.81014 2.32276 2.98036 3.01641 3.79705 3.84334 4.12415 4.12949 4.32981 4.58262 4.95499 5.24150 5.34253 5.47749 5.94736 6.13431 6.55026 6.61079 7.20697 8.79193 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.004402 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.529930 B = 6359.507385 C = 7294.589461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.250 1.250 7 C -0.541 4.541 8 H 0.040 0.960 9 C -0.003 4.003 10 C 0.092 3.908 11 O -0.348 6.348 12 C 0.537 3.463 13 O -0.521 6.521 14 C 0.006 3.994 15 C -0.210 4.210 16 S 0.425 5.575 17 C 0.015 3.985 18 Cl 0.041 6.959 19 N -0.452 5.452 20 H 0.271 0.729 21 H 0.032 0.968 22 H 0.031 0.969 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.012 -9.800 0.019 29.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.183 4.183 3 Si 0.773 3.227 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.174 1.174 7 C -0.578 4.578 8 H 0.059 0.941 9 C -0.041 4.041 10 C 0.019 3.981 11 O -0.263 6.263 12 C 0.380 3.620 13 O -0.411 6.411 14 C -0.127 4.127 15 C -0.353 4.353 16 S 0.678 5.322 17 C -0.289 4.289 18 Cl 0.068 6.932 19 N -0.170 5.170 20 H 0.080 0.920 21 H 0.050 0.950 22 H 0.049 0.951 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 28.448 -9.849 0.019 30.105 hybrid contribution -1.587 1.046 -0.015 1.900 sum 26.861 -8.804 0.004 28.267 Atomic orbital electron populations 1.70023 1.08118 1.28613 1.51284 1.25880 0.95653 1.03328 0.93461 0.85658 0.79421 0.78114 0.79526 1.18831 1.20249 1.17369 1.21074 0.90352 0.93987 1.52420 0.94140 1.19459 0.94419 0.91954 0.98263 1.23093 0.73269 1.00059 1.01726 1.86654 1.24943 1.32079 1.82661 1.20245 0.87665 0.81705 0.72383 1.90853 1.66392 1.36429 1.47461 1.18854 0.91250 0.88653 1.13990 1.27342 1.00990 1.04551 1.02367 1.82545 0.97445 0.93049 1.59180 1.27557 0.92458 0.98521 1.10336 1.98449 1.45127 1.52942 1.96670 1.66645 1.03110 1.33457 1.13833 0.91981 0.94992 0.95091 0.91700 0.91737 0.75967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.07 13.96 21.45 0.30 -58.77 15 2 C 0.02 0.90 5.47 84.65 0.46 1.36 15 3 Si 0.95 44.93 27.47 68.60 1.88 46.82 15 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.25 -11.26 6.54 99.48 0.65 -10.61 15 7 C -0.54 -31.96 9.66 25.60 0.25 -31.71 15 8 H 0.04 2.60 7.99 -2.91 -0.02 2.57 15 9 C 0.00 -0.17 4.42 29.85 0.13 -0.04 15 10 C 0.09 4.12 5.42 71.98 0.39 4.51 15 11 O -0.35 -14.49 10.16 -57.12 -0.58 -15.07 15 12 C 0.54 19.48 7.94 70.14 0.56 20.04 15 13 O -0.52 -20.04 16.50 19.62 0.32 -19.72 15 14 C 0.01 0.16 6.71 40.49 0.27 0.44 15 15 C -0.21 -3.61 10.61 67.13 0.71 -2.89 15 16 S 0.42 4.35 22.96 -56.49 -1.30 3.05 15 17 C 0.01 0.30 7.98 130.69 1.04 1.34 15 18 Cl 0.04 0.69 29.33 -2.72 -0.08 0.61 15 19 N -0.45 -12.87 10.61 -183.88 -1.95 -14.82 15 20 H 0.27 15.75 8.31 -92.71 -0.77 14.98 15 21 H 0.03 1.58 7.20 -2.39 -0.02 1.56 15 22 H 0.03 1.51 7.57 -2.39 -0.02 1.49 15 23 H 0.06 2.90 8.14 -2.39 -0.02 2.88 15 24 H 0.06 2.89 8.14 -2.39 -0.02 2.87 15 25 H 0.22 2.76 8.03 -2.91 -0.02 2.74 15 Total: -1.00 -73.13 265.32 3.59 -69.54 By element: Atomic # 1 Polarization: -5.86 SS G_CDS: 1.17 Total: -4.68 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 3.82 Total: -6.96 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -1.65 Total: -73.58 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.26 Total: -34.79 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.82 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.30 Total: 3.05 kcal Atomic # 17 Polarization: 0.69 SS G_CDS: -0.08 Total: 0.61 kcal Total: -73.13 3.59 -69.54 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781213833.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.125 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds