Wall clock time and date at job start Mon Mar 30 2020 07:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99754 * 2 1 4 4 H 1.48503 * 109.47111 * 269.99132 * 3 2 1 5 5 H 1.48494 * 109.47419 * 29.99208 * 3 2 1 6 6 H 1.48504 * 109.47409 * 149.99782 * 3 2 1 7 7 C 1.37872 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00452 * 0.02562 * 7 2 1 9 9 C 1.50710 * 119.99901 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47075 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.46960 * 180.02562 * 10 9 7 12 12 C 1.34831 * 117.00004 * 180.02562 * 11 10 9 13 13 O 1.21553 * 119.99995 * 359.97438 * 12 11 10 14 14 C 1.47068 * 120.00024 * 179.72420 * 12 11 10 15 15 N 1.30650 * 125.53422 * 359.96727 * 14 12 11 16 16 C 1.30683 * 115.90403 * 179.77971 * 15 14 12 17 17 Cl 1.73596 * 122.12361 * 180.23651 * 16 15 14 18 18 C 1.34397 * 115.75346 * 0.52268 * 16 15 14 19 19 S 1.71065 * 109.09255 * 359.71710 * 18 16 15 20 20 H 0.96996 * 119.99837 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46900 * 60.00060 * 9 7 2 22 22 H 1.08997 * 109.47051 * 300.00388 * 9 7 2 23 23 H 1.09003 * 109.47554 * 60.00036 * 10 9 7 24 24 H 1.08997 * 109.47152 * 299.99903 * 10 9 7 25 25 H 1.08003 * 125.45472 * 179.72687 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 8 5.4736 -2.6364 0.0022 12 6 6.0858 -3.8377 0.0017 13 8 5.4238 -4.8572 0.0008 14 6 7.5544 -3.9146 -0.0033 15 7 8.3683 -2.8926 -0.0082 16 6 9.6435 -3.1783 -0.0076 17 17 10.8657 -1.9455 -0.0075 18 6 9.9487 -4.4872 -0.0131 19 16 8.5015 -5.3992 -0.0114 20 1 -0.4850 0.8400 -0.0004 21 1 3.8746 -0.6800 0.8912 22 1 3.8753 -0.6803 -0.8888 23 1 3.6587 -3.1501 -0.8892 24 1 3.6580 -3.1504 0.8907 25 1 10.9478 -4.8975 -0.0177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789218027.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:52 Heat of formation + Delta-G solvation = -45.334071 kcal Electronic energy + Delta-G solvation = -14300.483376 eV Core-core repulsion = 11432.402131 eV Total energy + Delta-G solvation = -2868.081245 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.001 amu Computer time = 4.12 seconds Orbital eigenvalues (eV) -40.56296 -39.66216 -36.88391 -36.40699 -33.34281 -31.32433 -30.55693 -27.27031 -25.14304 -22.66135 -20.80519 -20.44785 -18.93511 -17.64710 -16.93250 -16.44291 -16.26508 -15.72604 -15.17211 -14.27579 -14.05103 -13.54725 -13.28464 -12.54325 -12.48682 -12.04333 -11.59718 -11.43731 -11.34838 -11.04321 -10.73740 -10.50280 -10.24979 -10.11845 -9.95692 -9.76909 -9.36557 -9.21249 -8.62421 -6.13447 -4.15059 -0.33890 0.48177 0.78231 1.71652 1.81681 2.74827 2.82888 3.29741 3.37098 3.42944 4.06744 4.39403 4.51056 4.66147 5.15597 5.20413 5.81645 5.89473 6.38114 6.49886 6.82523 7.11731 7.19880 7.59502 7.80594 8.37989 8.87457 9.46079 10.98841 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.027610 B = 0.004504 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.863702 B = 6214.674721 C = 7208.084442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.076 0.924 9 C -0.010 4.010 10 C 0.081 3.919 11 O -0.329 6.329 12 C 0.546 3.454 13 O -0.493 6.493 14 C 0.011 3.989 15 N -0.392 5.392 16 C 0.107 3.893 17 Cl -0.003 7.003 18 C -0.271 4.271 19 S 0.307 5.693 20 H 0.266 0.734 21 H 0.030 0.970 22 H 0.026 0.974 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.830 -10.040 0.001 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.707 3.293 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.008 3.992 11 O -0.243 6.243 12 C 0.385 3.615 13 O -0.381 6.381 14 C -0.262 4.262 15 N -0.111 5.111 16 C -0.059 4.059 17 Cl 0.026 6.974 18 C -0.413 4.413 19 S 0.562 5.438 20 H 0.076 0.924 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 22.004 -10.635 -0.004 24.440 hybrid contribution 1.151 1.755 -0.021 2.099 sum 23.156 -8.881 -0.025 24.800 Atomic orbital electron populations 1.69892 1.06269 1.27253 1.50000 1.24919 0.94764 0.99185 0.94046 0.86766 0.80505 0.83241 0.78831 1.20020 1.21157 1.18625 1.20807 0.88070 0.95091 1.52605 0.90553 1.19650 0.96996 0.89824 0.98243 1.23622 0.71062 1.02236 1.02272 1.86699 1.26713 1.29356 1.81553 1.19241 0.84964 0.83402 0.73898 1.90928 1.65054 1.36128 1.45998 1.26475 0.96693 0.92023 1.11041 1.66338 1.01273 1.32642 1.10868 1.20456 0.88696 0.88966 1.07758 1.98415 1.48433 1.53582 1.97016 1.26775 1.07317 0.96630 1.10578 1.84120 0.91957 1.07354 1.60360 0.92403 0.95132 0.95572 0.91106 0.91089 0.78497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.47 15 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 15 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 15 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 15 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 15 7 C -0.53 -14.90 9.66 -34.44 -0.33 -15.23 15 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 15 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.36 15 10 C 0.08 1.70 5.42 37.15 0.20 1.90 15 11 O -0.33 -6.45 10.21 -40.85 -0.42 -6.86 15 12 C 0.55 9.35 7.95 34.31 0.27 9.62 15 13 O -0.49 -8.90 16.73 -19.30 -0.32 -9.22 15 14 C 0.01 0.16 7.47 -14.48 -0.11 0.05 15 15 N -0.39 -5.76 10.62 -8.65 -0.09 -5.85 15 16 C 0.11 1.23 7.22 -19.40 -0.14 1.09 15 17 Cl 0.00 -0.03 29.20 -51.86 -1.51 -1.54 15 18 C -0.27 -2.20 10.93 29.38 0.32 -1.88 15 19 S 0.31 2.77 23.02 -107.50 -2.48 0.29 15 20 H 0.27 7.55 8.31 -40.82 -0.34 7.21 15 21 H 0.03 0.74 7.20 -51.93 -0.37 0.37 15 22 H 0.03 0.62 7.57 -51.93 -0.39 0.23 15 23 H 0.07 1.46 8.14 -51.93 -0.42 1.04 15 24 H 0.07 1.46 8.14 -51.93 -0.42 1.04 15 25 H 0.20 0.88 8.06 -52.48 -0.42 0.46 15 LS Contribution 265.91 15.07 4.01 4.01 Total: -1.00 -31.58 265.91 -6.34 -37.91 By element: Atomic # 1 Polarization: -4.76 SS G_CDS: -1.62 Total: -6.38 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.01 Total: -2.79 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.68 Total: -32.32 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.74 Total: -16.09 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.48 Total: 0.29 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.51 Total: -1.54 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.58 -6.34 -37.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789218027.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.420 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.12 seconds