Wall clock time and date at job start Mon Mar 30 2020 07:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99754 * 2 1 4 4 H 1.48503 * 109.47111 * 269.99132 * 3 2 1 5 5 H 1.48494 * 109.47419 * 29.99208 * 3 2 1 6 6 H 1.48504 * 109.47409 * 149.99782 * 3 2 1 7 7 C 1.37872 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00452 * 0.02562 * 7 2 1 9 9 C 1.50710 * 119.99901 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47075 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.46960 * 180.02562 * 10 9 7 12 12 C 1.34831 * 117.00004 * 180.02562 * 11 10 9 13 13 O 1.21553 * 119.99995 * 359.97438 * 12 11 10 14 14 C 1.47068 * 120.00024 * 179.72420 * 12 11 10 15 15 N 1.30650 * 125.53422 * 359.96727 * 14 12 11 16 16 C 1.30683 * 115.90403 * 179.77971 * 15 14 12 17 17 Cl 1.73596 * 122.12361 * 180.23651 * 16 15 14 18 18 C 1.34397 * 115.75346 * 0.52268 * 16 15 14 19 19 S 1.71065 * 109.09255 * 359.71710 * 18 16 15 20 20 H 0.96996 * 119.99837 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46900 * 60.00060 * 9 7 2 22 22 H 1.08997 * 109.47051 * 300.00388 * 9 7 2 23 23 H 1.09003 * 109.47554 * 60.00036 * 10 9 7 24 24 H 1.08997 * 109.47152 * 299.99903 * 10 9 7 25 25 H 1.08003 * 125.45472 * 179.72687 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 8 5.4736 -2.6364 0.0022 12 6 6.0858 -3.8377 0.0017 13 8 5.4238 -4.8572 0.0008 14 6 7.5544 -3.9146 -0.0033 15 7 8.3683 -2.8926 -0.0082 16 6 9.6435 -3.1783 -0.0076 17 17 10.8657 -1.9455 -0.0075 18 6 9.9487 -4.4872 -0.0131 19 16 8.5015 -5.3992 -0.0114 20 1 -0.4850 0.8400 -0.0004 21 1 3.8746 -0.6800 0.8912 22 1 3.8753 -0.6803 -0.8888 23 1 3.6587 -3.1501 -0.8892 24 1 3.6580 -3.1504 0.8907 25 1 10.9478 -4.8975 -0.0177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789218027.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:46 Heat of formation + Delta-G solvation = -66.495169 kcal Electronic energy + Delta-G solvation = -14301.400990 eV Core-core repulsion = 11432.402131 eV Total energy + Delta-G solvation = -2868.998859 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.001 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.73125 -40.76428 -37.89941 -37.65307 -35.41655 -32.93711 -31.82520 -28.40306 -26.90958 -23.84662 -22.64359 -21.60041 -19.84179 -19.21773 -18.45976 -17.82525 -17.70127 -16.71344 -16.30032 -16.23335 -15.11151 -15.04454 -14.80472 -14.40930 -13.42039 -13.28603 -13.21285 -12.83013 -12.61447 -12.54268 -12.19507 -12.06211 -11.83903 -11.55920 -11.50024 -11.24345 -11.03260 -10.81869 -10.02383 -8.35195 -6.42756 -1.21990 -0.35212 -0.01433 0.71196 1.02910 1.37222 1.38590 1.51520 1.60245 1.62411 2.33335 2.98382 2.99701 3.64424 3.90242 4.12054 4.15045 4.30504 4.59362 4.91653 5.25843 5.30170 5.49008 5.94957 6.14735 6.44009 6.63022 7.22294 8.80452 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.027610 B = 0.004504 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.863702 B = 6214.674721 C = 7208.084442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.249 1.249 7 C -0.539 4.539 8 H 0.042 0.958 9 C -0.005 4.005 10 C 0.091 3.909 11 O -0.342 6.342 12 C 0.547 3.453 13 O -0.512 6.512 14 C -0.049 4.049 15 N -0.422 5.422 16 C 0.077 3.923 17 Cl -0.001 7.001 18 C -0.235 4.235 19 S 0.401 5.599 20 H 0.271 0.729 21 H 0.033 0.967 22 H 0.031 0.969 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.011 -10.618 -0.028 28.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.183 4.183 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.173 1.173 7 C -0.577 4.577 8 H 0.060 0.940 9 C -0.043 4.043 10 C 0.018 3.982 11 O -0.257 6.257 12 C 0.388 3.612 13 O -0.401 6.401 14 C -0.318 4.318 15 N -0.143 5.143 16 C -0.088 4.088 17 Cl 0.027 6.973 18 C -0.377 4.377 19 S 0.655 5.345 20 H 0.080 0.920 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 25.186 -11.230 -0.033 27.576 hybrid contribution 0.293 1.728 -0.014 1.753 sum 25.479 -9.502 -0.047 27.193 Atomic orbital electron populations 1.70025 1.08112 1.28568 1.51351 1.25863 0.95623 1.03279 0.93534 0.85679 0.79464 0.78222 0.79484 1.18903 1.20411 1.17287 1.21070 0.90327 0.93998 1.52288 0.93973 1.19478 0.94412 0.91997 0.98374 1.23181 0.72664 1.00161 1.02170 1.86655 1.25316 1.31347 1.82390 1.19689 0.86490 0.82185 0.72805 1.90900 1.65961 1.36159 1.47058 1.25973 0.95068 0.94936 1.15862 1.66208 1.02778 1.34306 1.11036 1.20593 0.87954 0.90325 1.09952 1.98412 1.47850 1.53863 1.97172 1.27404 1.09299 0.95360 1.05625 1.83859 0.90021 1.03581 1.57038 0.92027 0.94915 0.95021 0.91259 0.91288 0.74161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.49 13.96 21.45 0.30 -58.19 15 2 C 0.02 0.90 5.47 84.65 0.46 1.36 15 3 Si 0.95 44.39 27.47 68.60 1.88 46.28 15 4 H -0.26 -11.87 7.11 99.48 0.71 -11.16 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.25 -11.07 6.54 99.48 0.65 -10.42 15 7 C -0.54 -31.23 9.66 25.60 0.25 -30.98 15 8 H 0.04 2.65 7.99 -2.91 -0.02 2.62 15 9 C -0.01 -0.25 4.42 29.85 0.13 -0.11 15 10 C 0.09 3.93 5.42 71.98 0.39 4.32 15 11 O -0.34 -13.57 10.21 -57.43 -0.59 -14.16 15 12 C 0.55 18.77 7.95 70.14 0.56 19.33 15 13 O -0.51 -18.50 16.73 19.66 0.33 -18.17 15 14 C -0.05 -1.31 7.47 87.19 0.65 -0.66 15 15 N -0.42 -11.93 10.62 -181.27 -1.93 -13.86 15 16 C 0.08 1.59 7.22 83.98 0.61 2.20 15 17 Cl 0.00 -0.02 29.20 -2.72 -0.08 -0.10 15 18 C -0.23 -2.81 10.93 66.94 0.73 -2.08 15 19 S 0.40 5.83 23.02 -56.49 -1.30 4.53 15 20 H 0.27 15.60 8.31 -92.71 -0.77 14.83 15 21 H 0.03 1.57 7.20 -2.39 -0.02 1.55 15 22 H 0.03 1.50 7.57 -2.39 -0.02 1.48 15 23 H 0.07 2.94 8.14 -2.39 -0.02 2.92 15 24 H 0.07 2.94 8.14 -2.39 -0.02 2.92 15 25 H 0.24 0.65 8.06 -2.91 -0.02 0.63 15 Total: -1.00 -70.43 265.91 3.57 -66.86 By element: Atomic # 1 Polarization: -7.74 SS G_CDS: 1.17 Total: -6.56 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 3.78 Total: -6.63 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -1.63 Total: -72.05 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.26 Total: -32.33 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.28 kcal Atomic # 16 Polarization: 5.83 SS G_CDS: -1.30 Total: 4.53 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -0.08 Total: -0.10 kcal Total: -70.43 3.57 -66.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789218027.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.362 kcal (2) G-P(sol) polarization free energy of solvation -70.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds