Wall clock time and date at job start Mon Mar 30 2020 06:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 119.99957 * 2 1 4 4 C 1.39535 * 120.00155 * 179.72066 * 2 1 3 5 5 C 1.39052 * 119.93334 * 179.72464 * 4 2 1 6 6 C 1.37794 * 120.06599 * 179.76735 * 5 4 2 7 7 C 1.39611 * 119.92980 * 0.50883 * 6 5 4 8 8 C 1.47756 * 120.06328 * 179.76601 * 7 6 5 9 9 C 1.32611 * 120.00055 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.00055 * 180.02562 * 9 8 7 11 11 N 1.46894 * 109.47487 * 124.99731 * 10 9 8 12 12 C 1.46900 * 111.00081 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47191 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99838 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99809 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00227 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99831 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47004 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46946 * 119.99957 * 17 15 13 20 20 H 1.48492 * 109.47306 * 239.99818 * 17 15 13 21 21 C 1.39601 * 119.86784 * 359.74376 * 7 6 5 22 22 C 1.37799 * 119.93397 * 0.02562 * 21 7 6 23 23 H 1.09001 * 109.47095 * 270.28113 * 1 2 3 24 24 H 1.09004 * 109.46794 * 30.27779 * 1 2 3 25 25 H 1.08997 * 109.47026 * 150.27479 * 1 2 3 26 26 H 1.09001 * 109.46871 * 239.72475 * 3 2 1 27 27 H 1.08996 * 109.47122 * 359.72034 * 3 2 1 28 28 H 1.08993 * 109.47229 * 119.72179 * 3 2 1 29 29 H 1.08001 * 119.96366 * 359.97438 * 5 4 2 30 30 H 1.08001 * 120.03714 * 180.27681 * 6 5 4 31 31 H 1.08000 * 119.99812 * 179.97438 * 8 7 6 32 32 H 1.08000 * 120.00133 * 359.97438 * 9 8 7 33 33 H 1.09002 * 109.46786 * 245.00040 * 10 9 8 34 34 H 1.08996 * 109.46874 * 4.98927 * 10 9 8 35 35 H 1.00893 * 111.00227 * 56.03784 * 11 10 9 36 36 H 1.09004 * 109.46739 * 299.99538 * 12 11 10 37 37 H 1.08996 * 109.47176 * 59.99343 * 12 11 10 38 38 H 0.97003 * 120.00057 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.03038 * 179.97438 * 21 7 6 40 40 H 1.08001 * 119.96659 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1627 -1.2084 0.0059 5 6 3.5532 -1.2068 0.0001 6 6 4.2450 -2.3984 0.0107 7 6 3.5483 -3.6083 0.0166 8 6 4.2871 -4.8878 0.0228 9 6 5.6132 -4.8878 0.0222 10 6 6.3668 -6.1929 0.0280 11 7 7.2991 -6.2251 -1.1067 12 6 8.0524 -7.4860 -1.1336 13 6 8.9958 -7.4826 -2.3088 14 1 9.0318 -6.6294 -2.9699 15 6 9.8128 -8.5689 -2.5400 16 7 9.7693 -9.6077 -1.7347 17 14 10.9816 -8.5650 -3.9972 18 1 10.8395 -7.2883 -4.7424 19 1 12.3784 -8.7014 -3.5117 20 1 10.6567 -9.7019 -4.8955 21 6 2.1523 -3.6066 0.0171 22 6 1.4661 -2.4117 0.0112 23 1 -0.3633 0.0050 1.0277 24 1 -0.3633 0.8875 -0.5182 25 1 -0.3633 -0.8924 -0.5095 26 1 2.8279 1.3244 -0.8875 27 1 1.4892 2.0972 -0.0050 28 1 2.8204 1.3287 0.8924 29 1 4.0915 -0.2705 -0.0094 30 1 5.3250 -2.3966 0.0107 31 1 3.7471 -5.8231 0.0277 32 1 6.1532 -3.9525 0.0169 33 1 6.9250 -6.2860 0.9596 34 1 5.6619 -7.0198 -0.0573 35 1 7.9220 -5.4317 -1.0856 36 1 8.6223 -7.5884 -0.2101 37 1 7.3588 -8.3216 -1.2272 38 1 10.3444 -10.3718 -1.8972 39 1 1.6107 -4.5410 0.0212 40 1 0.3861 -2.4098 0.0112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835051043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:48 Heat of formation + Delta-G solvation = 46.845087 kcal Electronic energy + Delta-G solvation = -17780.901052 eV Core-core repulsion = 14981.714920 eV Total energy + Delta-G solvation = -2799.186132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.68405 -36.93910 -35.64912 -33.38379 -32.04283 -31.23620 -29.43707 -28.41350 -26.93027 -25.10779 -23.31104 -22.53715 -21.37361 -20.82029 -19.04814 -17.59639 -16.42230 -15.84035 -15.51300 -15.32789 -14.71423 -14.65711 -14.41151 -13.94252 -13.59012 -13.19034 -13.02123 -12.94539 -12.74399 -12.46471 -12.31568 -12.14474 -11.97895 -11.35098 -11.24141 -10.94680 -10.75618 -10.61435 -10.50074 -10.43410 -9.90520 -9.14767 -8.94521 -8.83979 -8.45112 -7.29779 -7.04057 -6.00792 -4.02593 1.23143 1.46544 2.79897 2.90283 3.33145 3.40139 3.45817 4.05917 4.46026 4.65148 4.69611 4.91675 4.92959 5.01002 5.02453 5.25827 5.30976 5.35068 5.36351 5.36609 5.44385 5.53850 5.62493 5.71472 5.88370 6.02939 6.04134 6.15931 6.28169 6.44502 6.58139 6.80832 7.01260 7.04722 7.17657 7.27640 7.35258 7.44767 7.81637 8.15303 8.43163 8.64407 9.07128 9.62252 11.10385 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.042481 B = 0.002621 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.961287 B =10680.562871 C =11017.412966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.641 5.641 3 C 0.097 3.903 4 C 0.204 3.796 5 C -0.191 4.191 6 C -0.069 4.069 7 C -0.097 4.097 8 C -0.125 4.125 9 C -0.126 4.126 10 C 0.083 3.917 11 N -0.686 5.686 12 C 0.192 3.808 13 C -0.513 4.513 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.066 4.066 22 C -0.196 4.196 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.329 0.671 36 H -0.013 1.013 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.122 0.878 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.246 19.925 5.927 27.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.354 5.354 3 C -0.046 4.046 4 C 0.103 3.897 5 C -0.213 4.213 6 C -0.088 4.088 7 C -0.098 4.098 8 C -0.144 4.144 9 C -0.145 4.145 10 C -0.046 4.046 11 N -0.317 5.317 12 C 0.066 3.934 13 C -0.551 4.551 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.085 4.085 22 C -0.218 4.218 23 H 0.064 0.936 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.145 0.855 36 H 0.004 0.996 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.140 0.860 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.742 19.691 5.499 27.735 hybrid contribution 1.236 0.037 -0.007 1.236 sum -17.506 19.728 5.492 26.941 Atomic orbital electron populations 1.21634 0.79761 1.02543 1.00957 1.46252 1.04835 1.03245 1.81069 1.21571 0.96953 0.84841 1.01244 1.17848 0.91219 0.85486 0.95136 1.20540 0.91903 0.98478 1.10420 1.21102 0.99701 0.91257 0.96713 1.18903 0.92990 0.93109 1.04837 1.21473 0.94281 0.95291 1.03383 1.23360 0.94958 0.98709 0.97431 1.20985 0.95991 0.94430 0.93183 1.60724 1.23053 1.06945 1.40946 1.19589 0.91831 0.86207 0.95815 1.21235 1.19932 1.02727 1.11224 0.91871 1.25006 0.97419 0.95458 0.96823 1.69978 1.39696 1.06442 1.37701 0.86415 0.80386 0.78074 0.82382 1.19634 1.21110 1.20986 1.21003 0.93311 0.97225 0.96953 1.20569 0.99334 0.91083 1.10815 0.93621 0.91761 0.91293 0.92810 0.91117 0.92886 0.86314 0.85752 0.86779 0.87502 0.95302 0.91282 0.85524 0.99560 0.95371 0.92979 0.85995 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 10.15 59.85 0.61 1.21 16 2 N -0.64 -5.72 3.40 -187.51 -0.64 -6.36 16 3 C 0.10 0.65 9.39 59.85 0.56 1.21 16 4 C 0.20 2.29 6.55 -83.75 -0.55 1.74 16 5 C -0.19 -2.22 9.29 -39.44 -0.37 -2.59 16 6 C -0.07 -0.89 9.39 -39.23 -0.37 -1.26 16 7 C -0.10 -1.31 5.87 -104.99 -0.62 -1.92 16 8 C -0.13 -1.82 9.51 -37.59 -0.36 -2.18 16 9 C -0.13 -1.97 9.20 -36.21 -0.33 -2.30 16 10 C 0.08 1.55 6.13 -4.98 -0.03 1.52 16 11 N -0.69 -15.37 6.48 -116.34 -0.75 -16.13 16 12 C 0.19 5.19 5.44 -4.97 -0.03 5.17 16 13 C -0.51 -14.89 9.32 -34.44 -0.32 -15.21 16 14 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 17 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.07 -0.80 9.77 -39.23 -0.38 -1.18 16 22 C -0.20 -2.17 9.19 -39.44 -0.36 -2.53 16 23 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.06 0.30 7.92 -51.93 -0.41 -0.11 16 25 H 0.07 0.43 6.18 -51.93 -0.32 0.11 16 26 H 0.05 0.36 7.92 -51.93 -0.41 -0.05 16 27 H 0.07 0.33 7.80 -51.93 -0.40 -0.08 16 28 H 0.05 0.35 7.96 -51.93 -0.41 -0.07 16 29 H 0.12 1.17 6.71 -52.49 -0.35 0.82 16 30 H 0.12 1.49 6.16 -52.49 -0.32 1.16 16 31 H 0.11 1.57 7.87 -52.49 -0.41 1.16 16 32 H 0.11 1.54 6.03 -52.49 -0.32 1.22 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 1.29 7.81 -51.93 -0.41 0.89 16 35 H 0.33 6.95 8.72 -39.30 -0.34 6.61 16 36 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.07 6.12 -52.49 -0.32 0.75 16 LS Contribution 332.63 15.07 5.01 5.01 Total: -1.00 -32.27 332.63 -9.40 -41.67 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.09 Total: 2.21 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -2.64 Total: -16.85 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.66 Total: -49.05 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.27 -9.40 -41.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835051043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.517 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds