Wall clock time and date at job start Mon Mar 30 2020 06:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 119.99957 * 2 1 4 4 C 1.39535 * 120.00155 * 179.72066 * 2 1 3 5 5 C 1.39052 * 119.93334 * 179.72464 * 4 2 1 6 6 C 1.37794 * 120.06599 * 179.76735 * 5 4 2 7 7 C 1.39611 * 119.92980 * 0.50883 * 6 5 4 8 8 C 1.47756 * 120.06328 * 179.76601 * 7 6 5 9 9 C 1.32611 * 120.00055 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.00055 * 180.02562 * 9 8 7 11 11 N 1.46894 * 109.47487 * 124.99731 * 10 9 8 12 12 C 1.46900 * 111.00081 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47191 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99838 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99809 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00227 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99831 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47004 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46946 * 119.99957 * 17 15 13 20 20 H 1.48492 * 109.47306 * 239.99818 * 17 15 13 21 21 C 1.39601 * 119.86784 * 359.74376 * 7 6 5 22 22 C 1.37799 * 119.93397 * 0.02562 * 21 7 6 23 23 H 1.09001 * 109.47095 * 270.28113 * 1 2 3 24 24 H 1.09004 * 109.46794 * 30.27779 * 1 2 3 25 25 H 1.08997 * 109.47026 * 150.27479 * 1 2 3 26 26 H 1.09001 * 109.46871 * 239.72475 * 3 2 1 27 27 H 1.08996 * 109.47122 * 359.72034 * 3 2 1 28 28 H 1.08993 * 109.47229 * 119.72179 * 3 2 1 29 29 H 1.08001 * 119.96366 * 359.97438 * 5 4 2 30 30 H 1.08001 * 120.03714 * 180.27681 * 6 5 4 31 31 H 1.08000 * 119.99812 * 179.97438 * 8 7 6 32 32 H 1.08000 * 120.00133 * 359.97438 * 9 8 7 33 33 H 1.09002 * 109.46786 * 245.00040 * 10 9 8 34 34 H 1.08996 * 109.46874 * 4.98927 * 10 9 8 35 35 H 1.00893 * 111.00227 * 56.03784 * 11 10 9 36 36 H 1.09004 * 109.46739 * 299.99538 * 12 11 10 37 37 H 1.08996 * 109.47176 * 59.99343 * 12 11 10 38 38 H 0.97003 * 120.00057 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.03038 * 179.97438 * 21 7 6 40 40 H 1.08001 * 119.96659 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1627 -1.2084 0.0059 5 6 3.5532 -1.2068 0.0001 6 6 4.2450 -2.3984 0.0107 7 6 3.5483 -3.6083 0.0166 8 6 4.2871 -4.8878 0.0228 9 6 5.6132 -4.8878 0.0222 10 6 6.3668 -6.1929 0.0280 11 7 7.2991 -6.2251 -1.1067 12 6 8.0524 -7.4860 -1.1336 13 6 8.9958 -7.4826 -2.3088 14 1 9.0318 -6.6294 -2.9699 15 6 9.8128 -8.5689 -2.5400 16 7 9.7693 -9.6077 -1.7347 17 14 10.9816 -8.5650 -3.9972 18 1 10.8395 -7.2883 -4.7424 19 1 12.3784 -8.7014 -3.5117 20 1 10.6567 -9.7019 -4.8955 21 6 2.1523 -3.6066 0.0171 22 6 1.4661 -2.4117 0.0112 23 1 -0.3633 0.0050 1.0277 24 1 -0.3633 0.8875 -0.5182 25 1 -0.3633 -0.8924 -0.5095 26 1 2.8279 1.3244 -0.8875 27 1 1.4892 2.0972 -0.0050 28 1 2.8204 1.3287 0.8924 29 1 4.0915 -0.2705 -0.0094 30 1 5.3250 -2.3966 0.0107 31 1 3.7471 -5.8231 0.0277 32 1 6.1532 -3.9525 0.0169 33 1 6.9250 -6.2860 0.9596 34 1 5.6619 -7.0198 -0.0573 35 1 7.9220 -5.4317 -1.0856 36 1 8.6223 -7.5884 -0.2101 37 1 7.3588 -8.3216 -1.2272 38 1 10.3444 -10.3718 -1.8972 39 1 1.6107 -4.5410 0.0212 40 1 0.3861 -2.4098 0.0112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835051043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:47 Heat of formation + Delta-G solvation = 27.264647 kcal Electronic energy + Delta-G solvation = -17781.750124 eV Core-core repulsion = 14981.714920 eV Total energy + Delta-G solvation = -2800.035204 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52593 -37.98894 -37.08435 -35.07034 -33.75450 -32.08167 -30.66539 -28.99396 -28.61488 -26.35035 -24.63728 -23.43986 -23.28242 -21.81682 -20.19277 -18.56035 -18.35777 -16.85658 -16.66350 -16.44140 -16.12847 -15.92694 -15.54534 -15.16363 -14.71102 -14.57917 -14.34902 -13.80698 -13.67426 -13.57461 -13.44144 -13.25791 -12.99775 -12.81040 -12.69220 -12.65893 -12.40008 -12.15635 -11.86904 -11.54388 -11.39660 -11.25304 -10.67977 -9.85128 -9.83359 -9.10453 -8.23393 -7.94309 -6.34666 0.22497 0.57597 1.41404 1.42491 1.56672 1.71141 2.27246 2.40630 3.09893 3.10983 3.70262 3.87822 4.01258 4.08982 4.19636 4.21269 4.41942 4.51330 4.52762 4.57003 4.58893 4.70743 4.78309 4.80490 4.88484 4.90295 4.94603 5.07621 5.18632 5.25100 5.30845 5.45082 5.57590 5.61640 5.85204 5.94106 6.00470 6.06135 6.37664 6.43998 6.56013 6.70937 6.88250 7.36338 8.88862 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.042481 B = 0.002621 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.961287 B =10680.562871 C =11017.412966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.644 5.644 3 C 0.091 3.909 4 C 0.204 3.796 5 C -0.203 4.203 6 C -0.076 4.076 7 C -0.129 4.129 8 C -0.104 4.104 9 C -0.149 4.149 10 C 0.088 3.912 11 N -0.687 5.687 12 C 0.206 3.794 13 C -0.536 4.536 14 H 0.064 0.936 15 C -0.001 4.001 16 N -0.935 5.935 17 Si 0.977 3.023 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.067 4.067 22 C -0.204 4.204 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.028 0.972 34 H 0.062 0.938 35 H 0.336 0.664 36 H -0.037 1.037 37 H 0.000 1.000 38 H 0.266 0.734 39 H 0.136 0.864 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.336 21.916 5.164 29.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.355 5.355 3 C -0.052 4.052 4 C 0.101 3.899 5 C -0.226 4.226 6 C -0.094 4.094 7 C -0.131 4.131 8 C -0.123 4.123 9 C -0.167 4.167 10 C -0.040 4.040 11 N -0.318 5.318 12 C 0.078 3.922 13 C -0.574 4.574 14 H 0.083 0.917 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.801 3.199 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.203 1.203 21 C -0.086 4.086 22 C -0.226 4.226 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.153 0.847 36 H -0.020 1.020 37 H 0.018 0.982 38 H 0.075 0.925 39 H 0.154 0.846 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.864 21.731 4.748 29.822 hybrid contribution 1.384 -0.451 0.289 1.484 sum -18.479 21.280 5.037 28.630 Atomic orbital electron populations 1.21830 0.78252 1.03673 1.01762 1.46574 1.06014 1.03115 1.79782 1.21741 0.97613 0.84610 1.01237 1.18085 0.91376 0.86638 0.93812 1.20721 0.92447 0.98650 1.10756 1.21236 1.00009 0.91614 0.96568 1.18929 0.93765 0.92683 1.07697 1.21631 0.93967 0.96245 1.00493 1.23083 0.95240 0.97411 1.00970 1.20951 0.95178 0.96181 0.91739 1.60599 1.22732 1.05245 1.43210 1.19249 0.91043 0.87515 0.94370 1.21574 1.20788 1.03149 1.11907 0.91730 1.26004 0.99156 0.94826 0.99934 1.70103 1.40641 1.07169 1.39576 0.85228 0.77897 0.78463 0.78355 1.18652 1.20130 1.20297 1.21229 0.92864 0.98404 0.96053 1.20823 1.00472 0.90704 1.10594 0.92908 0.89719 0.91159 0.92870 0.88734 0.92820 0.84922 0.85594 0.86405 0.86396 0.95409 0.91963 0.84679 1.01969 0.98185 0.92546 0.84622 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.15 127.77 1.30 2.15 16 2 N -0.64 -9.83 3.40 -747.14 -2.54 -12.38 16 3 C 0.09 0.97 9.39 127.77 1.20 2.17 16 4 C 0.20 4.20 6.55 38.30 0.25 4.45 16 5 C -0.20 -4.48 9.29 22.36 0.21 -4.27 16 6 C -0.08 -1.90 9.39 22.50 0.21 -1.68 16 7 C -0.13 -3.41 5.87 -20.10 -0.12 -3.53 16 8 C -0.10 -3.02 9.51 23.63 0.22 -2.79 16 9 C -0.15 -4.69 9.20 24.53 0.23 -4.46 16 10 C 0.09 3.37 6.13 85.56 0.52 3.90 16 11 N -0.69 -31.57 6.48 -521.98 -3.38 -34.95 16 12 C 0.21 11.55 5.44 85.56 0.47 12.02 16 13 C -0.54 -31.62 9.32 25.60 0.24 -31.39 16 14 H 0.06 3.71 7.81 -2.91 -0.02 3.68 16 15 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 16 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 17 Si 0.98 45.17 29.54 68.60 2.03 47.19 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 C -0.07 -1.53 9.77 22.49 0.22 -1.31 16 22 C -0.20 -4.13 9.19 22.36 0.21 -3.93 16 23 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.08 0.50 7.92 -2.38 -0.02 0.48 16 25 H 0.07 0.68 6.18 -2.39 -0.01 0.66 16 26 H 0.05 0.59 7.92 -2.39 -0.02 0.57 16 27 H 0.09 0.56 7.80 -2.39 -0.02 0.54 16 28 H 0.05 0.58 7.96 -2.39 -0.02 0.56 16 29 H 0.13 2.43 6.71 -2.91 -0.02 2.41 16 30 H 0.13 2.98 6.16 -2.91 -0.02 2.97 16 31 H 0.12 3.23 7.87 -2.91 -0.02 3.20 16 32 H 0.12 3.42 6.03 -2.91 -0.02 3.40 16 33 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 2.42 7.81 -2.39 -0.02 2.40 16 35 H 0.34 14.48 8.72 -89.70 -0.78 13.69 16 36 H -0.04 -2.22 8.14 -2.38 -0.02 -2.24 16 37 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.14 2.16 6.12 -2.91 -0.02 2.15 16 Total: -1.00 -69.31 332.63 2.24 -67.07 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.24 Total: 18.72 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 5.62 Total: -28.27 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -5.64 Total: -104.71 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -69.31 2.24 -67.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835051043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.337 kcal (2) G-P(sol) polarization free energy of solvation -69.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds