Wall clock time and date at job start Mon Mar 30 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46501 * 120.00283 * 2 1 4 4 C 1.39541 * 119.99947 * 179.72788 * 2 1 3 5 5 C 1.39049 * 119.93353 * 179.72085 * 4 2 1 6 6 C 1.37800 * 120.06389 * 179.76149 * 5 4 2 7 7 C 1.39605 * 119.93581 * 0.53542 * 6 5 4 8 8 C 1.47748 * 120.07166 * 179.69852 * 7 6 5 9 9 C 1.32616 * 119.99883 * 38.08141 * 8 7 6 10 10 C 1.50700 * 119.99802 * 8.49787 * 9 8 7 11 11 N 1.46902 * 109.47166 * 127.09892 * 10 9 8 12 12 C 1.46895 * 111.00056 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47296 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99954 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00395 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99794 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00166 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47240 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47384 * 120.00217 * 17 15 13 20 20 H 1.48507 * 109.47178 * 239.99769 * 17 15 13 21 21 C 1.39614 * 119.86439 * 359.71775 * 7 6 5 22 22 C 1.37802 * 119.93046 * 0.02562 * 21 7 6 23 23 H 1.09000 * 109.47886 * 89.99889 * 1 2 3 24 24 H 1.08998 * 109.47453 * 210.00395 * 1 2 3 25 25 H 1.09001 * 109.47053 * 329.99631 * 1 2 3 26 26 H 1.09000 * 109.46987 * 359.97438 * 3 2 1 27 27 H 1.08998 * 109.47024 * 120.00240 * 3 2 1 28 28 H 1.09008 * 109.46970 * 240.00425 * 3 2 1 29 29 H 1.07996 * 119.96540 * 0.02562 * 5 4 2 30 30 H 1.08003 * 120.03323 * 180.27294 * 6 5 4 31 31 H 1.07994 * 120.00197 * 218.08586 * 8 7 6 32 32 H 1.08001 * 120.00175 * 188.49084 * 9 8 7 33 33 H 1.08997 * 109.47179 * 247.10054 * 10 9 8 34 34 H 1.08998 * 109.47379 * 7.10460 * 10 9 8 35 35 H 1.00906 * 110.99526 * 56.04729 * 11 10 9 36 36 H 1.09005 * 109.47351 * 299.99906 * 12 11 10 37 37 H 1.09004 * 109.47499 * 60.00264 * 12 11 10 38 38 H 0.97003 * 120.00223 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.03228 * 180.02562 * 21 7 6 40 40 H 1.08006 * 119.95901 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1626 -1.2085 0.0057 5 6 3.5531 -1.2069 -0.0001 6 6 4.2448 -2.3986 0.0105 7 6 3.5482 -3.6085 0.0158 8 6 4.2868 -4.8881 0.0205 9 6 5.4018 -5.0075 0.7286 10 6 5.8137 -3.9105 1.6762 11 7 6.0587 -4.4802 3.0079 12 6 6.4637 -3.4376 3.9601 13 6 6.7063 -4.0584 5.3117 14 1 6.5733 -5.1213 5.4495 15 6 7.0981 -3.2695 6.3725 16 7 7.2596 -1.9751 6.2049 17 14 7.3994 -4.0392 8.0476 18 1 7.1497 -5.5011 7.9728 19 1 8.8059 -3.7971 8.4579 20 1 6.4815 -3.4311 9.0441 21 6 2.1521 -3.6068 0.0164 22 6 1.4659 -2.4117 0.0111 23 1 -0.3635 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.4892 2.0972 -0.0005 27 1 2.8242 1.3264 0.8899 28 1 2.8241 1.3264 -0.8901 29 1 4.0914 -0.2707 -0.0087 30 1 5.3248 -2.3968 0.0104 31 1 3.9189 -5.7261 -0.5528 32 1 6.0145 -5.8910 0.6262 33 1 6.7248 -3.4373 1.3102 34 1 5.0186 -3.1676 1.7396 35 1 6.7465 -5.2172 2.9649 36 1 7.3796 -2.9615 3.6098 37 1 5.6735 -2.6909 4.0394 38 1 7.5355 -1.4201 6.9510 39 1 1.6104 -4.5411 0.0209 40 1 0.3859 -2.4099 0.0111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835051044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:51 Heat of formation + Delta-G solvation = 54.609389 kcal Electronic energy + Delta-G solvation = -18581.284912 eV Core-core repulsion = 15782.435466 eV Total energy + Delta-G solvation = -2798.849447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.60275 -37.06743 -35.36211 -33.33629 -31.92118 -31.06998 -29.06705 -28.22768 -27.01878 -24.89186 -23.79545 -22.12628 -21.24369 -20.79212 -18.92225 -17.17143 -16.31752 -15.85227 -15.20622 -15.12703 -14.86245 -14.51138 -14.46086 -13.70665 -13.53717 -13.26755 -12.98919 -12.77640 -12.43755 -12.41785 -12.22996 -12.01839 -11.75525 -11.48823 -11.21146 -10.75241 -10.70941 -10.57906 -10.40281 -10.00851 -9.76863 -9.12284 -8.75278 -8.68256 -8.42529 -7.20445 -6.99247 -5.99245 -4.00792 1.47332 1.65853 2.74938 3.09648 3.33632 3.40559 3.46339 4.12500 4.47238 4.84527 4.89873 5.10395 5.12012 5.16833 5.21916 5.36628 5.37756 5.45703 5.50430 5.58199 5.60961 5.71220 5.73687 5.81879 5.94767 6.09245 6.21091 6.34267 6.43004 6.54203 6.79255 6.94088 6.99729 7.23684 7.24973 7.31674 7.47955 7.54087 7.83807 8.17992 8.47253 8.68322 9.09010 9.63897 11.12018 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.004228 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.711512 B = 6620.224430 C = 7537.583933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.641 5.641 3 C 0.096 3.904 4 C 0.209 3.791 5 C -0.194 4.194 6 C -0.058 4.058 7 C -0.103 4.103 8 C -0.127 4.127 9 C -0.128 4.128 10 C 0.071 3.929 11 N -0.685 5.685 12 C 0.194 3.806 13 C -0.512 4.512 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.063 4.063 22 C -0.199 4.199 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.024 0.976 34 H 0.085 0.915 35 H 0.326 0.674 36 H -0.015 1.015 37 H 0.028 0.972 38 H 0.260 0.740 39 H 0.120 0.880 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.453 3.028 -16.069 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.353 5.353 3 C -0.047 4.047 4 C 0.108 3.892 5 C -0.216 4.216 6 C -0.077 4.077 7 C -0.105 4.105 8 C -0.145 4.145 9 C -0.147 4.147 10 C -0.058 4.058 11 N -0.315 5.315 12 C 0.067 3.933 13 C -0.550 4.550 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.082 4.082 22 C -0.221 4.221 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.041 0.959 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.003 0.997 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.138 0.862 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.172 3.415 -15.772 20.213 hybrid contribution 1.079 -0.050 0.755 1.318 sum -11.093 3.364 -15.016 18.970 Atomic orbital electron populations 1.21622 0.79848 1.02593 1.00781 1.46252 1.04806 1.03304 1.80982 1.21588 0.96955 0.84752 1.01401 1.17844 0.91214 0.85472 0.94655 1.20554 0.91934 0.98570 1.10529 1.21184 0.99689 0.91186 0.95635 1.18800 0.92924 0.93058 1.05672 1.21415 0.95722 0.95405 1.01996 1.23299 0.96541 0.99613 0.95209 1.21453 0.99459 0.95425 0.89424 1.60748 1.50980 1.14339 1.05467 1.19562 0.93995 0.89785 0.89947 1.21244 1.44877 0.94892 0.94035 0.91895 1.24993 0.95626 0.94817 0.99194 1.69980 1.47849 1.04353 1.31653 0.86431 0.77619 0.79496 0.83804 1.19626 1.21105 1.21016 1.20947 0.93308 0.97082 0.96831 1.20535 0.99241 0.91106 1.11231 0.93714 0.91309 0.91786 0.91162 0.92564 0.92914 0.86230 0.85694 0.86933 0.87292 0.95863 0.89695 0.85793 0.99683 0.95437 0.93030 0.86205 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 10.16 59.84 0.61 1.42 16 2 N -0.64 -7.33 3.40 -187.51 -0.64 -7.97 16 3 C 0.10 0.90 9.39 59.85 0.56 1.46 16 4 C 0.21 2.88 6.55 -83.75 -0.55 2.33 16 5 C -0.19 -2.80 9.29 -39.44 -0.37 -3.17 16 6 C -0.06 -0.89 7.31 -39.23 -0.29 -1.18 16 7 C -0.10 -1.55 5.14 -104.99 -0.54 -2.09 16 8 C -0.13 -1.84 9.79 -37.60 -0.37 -2.20 16 9 C -0.13 -2.02 9.71 -36.21 -0.35 -2.37 16 10 C 0.07 1.36 4.44 -4.98 -0.02 1.34 16 11 N -0.69 -15.69 6.48 -116.34 -0.75 -16.44 16 12 C 0.19 5.33 5.44 -4.98 -0.03 5.30 16 13 C -0.51 -15.02 9.32 -34.44 -0.32 -15.34 16 14 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 17 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 21 C -0.06 -0.87 9.77 -39.23 -0.38 -1.26 16 22 C -0.20 -2.63 9.19 -39.44 -0.36 -3.00 16 23 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 0.58 6.17 -51.93 -0.32 0.26 16 25 H 0.06 0.45 7.92 -51.93 -0.41 0.03 16 26 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 27 H 0.06 0.57 7.95 -51.93 -0.41 0.16 16 28 H 0.05 0.46 7.93 -51.92 -0.41 0.05 16 29 H 0.12 1.56 6.71 -52.49 -0.35 1.21 16 30 H 0.13 1.87 6.35 -52.48 -0.33 1.53 16 31 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.02 0.44 7.99 -51.93 -0.41 0.03 16 34 H 0.09 1.72 4.85 -51.93 -0.25 1.47 16 35 H 0.33 7.01 8.71 -39.29 -0.34 6.67 16 36 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.12 1.30 6.12 -52.48 -0.32 0.98 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -32.70 328.19 -9.29 -41.99 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.06 Total: 4.34 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -2.50 Total: -17.25 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.66 Total: -51.15 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.70 -9.29 -41.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835051044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.600 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds