Wall clock time and date at job start Mon Mar 30 2020 06:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46501 * 120.00283 * 2 1 4 4 C 1.39541 * 119.99947 * 179.72788 * 2 1 3 5 5 C 1.39049 * 119.93353 * 179.72085 * 4 2 1 6 6 C 1.37800 * 120.06389 * 179.76149 * 5 4 2 7 7 C 1.39605 * 119.93581 * 0.53542 * 6 5 4 8 8 C 1.47748 * 120.07166 * 179.69852 * 7 6 5 9 9 C 1.32616 * 119.99883 * 38.08141 * 8 7 6 10 10 C 1.50700 * 119.99802 * 8.49787 * 9 8 7 11 11 N 1.46902 * 109.47166 * 127.09892 * 10 9 8 12 12 C 1.46895 * 111.00056 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47296 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99954 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00395 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99794 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00166 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47240 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47384 * 120.00217 * 17 15 13 20 20 H 1.48507 * 109.47178 * 239.99769 * 17 15 13 21 21 C 1.39614 * 119.86439 * 359.71775 * 7 6 5 22 22 C 1.37802 * 119.93046 * 0.02562 * 21 7 6 23 23 H 1.09000 * 109.47886 * 89.99889 * 1 2 3 24 24 H 1.08998 * 109.47453 * 210.00395 * 1 2 3 25 25 H 1.09001 * 109.47053 * 329.99631 * 1 2 3 26 26 H 1.09000 * 109.46987 * 359.97438 * 3 2 1 27 27 H 1.08998 * 109.47024 * 120.00240 * 3 2 1 28 28 H 1.09008 * 109.46970 * 240.00425 * 3 2 1 29 29 H 1.07996 * 119.96540 * 0.02562 * 5 4 2 30 30 H 1.08003 * 120.03323 * 180.27294 * 6 5 4 31 31 H 1.07994 * 120.00197 * 218.08586 * 8 7 6 32 32 H 1.08001 * 120.00175 * 188.49084 * 9 8 7 33 33 H 1.08997 * 109.47179 * 247.10054 * 10 9 8 34 34 H 1.08998 * 109.47379 * 7.10460 * 10 9 8 35 35 H 1.00906 * 110.99526 * 56.04729 * 11 10 9 36 36 H 1.09005 * 109.47351 * 299.99906 * 12 11 10 37 37 H 1.09004 * 109.47499 * 60.00264 * 12 11 10 38 38 H 0.97003 * 120.00223 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.03228 * 180.02562 * 21 7 6 40 40 H 1.08006 * 119.95901 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1626 -1.2085 0.0057 5 6 3.5531 -1.2069 -0.0001 6 6 4.2448 -2.3986 0.0105 7 6 3.5482 -3.6085 0.0158 8 6 4.2868 -4.8881 0.0205 9 6 5.4018 -5.0075 0.7286 10 6 5.8137 -3.9105 1.6762 11 7 6.0587 -4.4802 3.0079 12 6 6.4637 -3.4376 3.9601 13 6 6.7063 -4.0584 5.3117 14 1 6.5733 -5.1213 5.4495 15 6 7.0981 -3.2695 6.3725 16 7 7.2596 -1.9751 6.2049 17 14 7.3994 -4.0392 8.0476 18 1 7.1497 -5.5011 7.9728 19 1 8.8059 -3.7971 8.4579 20 1 6.4815 -3.4311 9.0441 21 6 2.1521 -3.6068 0.0164 22 6 1.4659 -2.4117 0.0111 23 1 -0.3635 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.4892 2.0972 -0.0005 27 1 2.8242 1.3264 0.8899 28 1 2.8241 1.3264 -0.8901 29 1 4.0914 -0.2707 -0.0087 30 1 5.3248 -2.3968 0.0104 31 1 3.9189 -5.7261 -0.5528 32 1 6.0145 -5.8910 0.6262 33 1 6.7248 -3.4373 1.3102 34 1 5.0186 -3.1676 1.7396 35 1 6.7465 -5.2172 2.9649 36 1 7.3796 -2.9615 3.6098 37 1 5.6735 -2.6909 4.0394 38 1 7.5355 -1.4201 6.9510 39 1 1.6104 -4.5411 0.0209 40 1 0.3859 -2.4099 0.0111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835051044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:50 Heat of formation + Delta-G solvation = 34.218251 kcal Electronic energy + Delta-G solvation = -18582.169138 eV Core-core repulsion = 15782.435466 eV Total energy + Delta-G solvation = -2799.733673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.64609 -38.24986 -36.87034 -35.05860 -33.71859 -32.11855 -30.32107 -29.00924 -28.81955 -26.28108 -25.11537 -23.67360 -22.82425 -21.91393 -20.13331 -18.64179 -17.98763 -16.93008 -16.76240 -16.32131 -16.22999 -15.93558 -15.79446 -14.97863 -14.66833 -14.59258 -14.34660 -14.32053 -13.63141 -13.47474 -13.44540 -13.15778 -13.01715 -12.89056 -12.73767 -12.68322 -12.43516 -12.07625 -11.74773 -11.63357 -11.27550 -10.97632 -10.68113 -9.87585 -9.78972 -9.08216 -8.23856 -8.01146 -6.35615 0.34554 0.56735 1.40446 1.41751 1.55541 1.58711 2.26328 2.39998 3.02212 3.09313 3.79058 3.93299 4.00042 4.08616 4.17619 4.24388 4.39239 4.47253 4.49111 4.53850 4.61988 4.69411 4.78189 4.83447 4.86750 4.89890 5.02365 5.06342 5.17860 5.24960 5.35385 5.37452 5.59846 5.64599 5.76944 5.93551 6.00100 6.08572 6.36754 6.44251 6.55236 6.71723 6.88672 7.35597 8.88481 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.004228 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.711512 B = 6620.224430 C = 7537.583933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.646 5.646 3 C 0.091 3.909 4 C 0.203 3.797 5 C -0.214 4.214 6 C -0.072 4.072 7 C -0.131 4.131 8 C -0.104 4.104 9 C -0.150 4.150 10 C 0.076 3.924 11 N -0.685 5.685 12 C 0.209 3.791 13 C -0.536 4.536 14 H 0.066 0.934 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.977 3.023 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.278 1.278 21 C -0.065 4.065 22 C -0.205 4.205 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.144 0.856 32 H 0.129 0.871 33 H 0.019 0.981 34 H 0.071 0.929 35 H 0.335 0.665 36 H -0.040 1.040 37 H -0.006 1.006 38 H 0.266 0.734 39 H 0.143 0.857 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.923 2.077 -16.079 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.357 5.357 3 C -0.051 4.051 4 C 0.100 3.900 5 C -0.236 4.236 6 C -0.091 4.091 7 C -0.133 4.133 8 C -0.122 4.122 9 C -0.168 4.168 10 C -0.052 4.052 11 N -0.316 5.316 12 C 0.082 3.918 13 C -0.575 4.575 14 H 0.084 0.916 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.801 3.199 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.203 1.203 21 C -0.083 4.083 22 C -0.227 4.227 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.162 0.838 32 H 0.147 0.853 33 H 0.037 0.963 34 H 0.089 0.911 35 H 0.152 0.848 36 H -0.022 1.022 37 H 0.012 0.988 38 H 0.074 0.926 39 H 0.161 0.839 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.660 2.472 -15.809 21.039 hybrid contribution 1.431 0.376 0.663 1.621 sum -12.230 2.848 -15.146 19.674 Atomic orbital electron populations 1.21833 0.78038 1.03581 1.01945 1.46568 1.06127 1.03039 1.79965 1.21714 0.97612 0.84889 1.00925 1.18076 0.91154 0.86878 0.93904 1.20697 0.92823 0.98565 1.11550 1.21246 0.99489 0.92037 0.96339 1.19030 0.93891 0.93178 1.07234 1.21728 0.94338 0.95752 1.00417 1.23143 0.98134 0.99457 0.96064 1.21406 0.98886 0.96534 0.88366 1.60627 1.50702 1.13340 1.06924 1.19194 0.91570 0.90046 0.91029 1.21581 1.45591 0.95202 0.95084 0.91615 1.26006 0.94839 0.95246 1.03704 1.70113 1.48224 1.05959 1.33259 0.85226 0.77857 0.78887 0.77965 1.18525 1.20045 1.20340 1.21259 0.92871 0.98378 0.95799 1.20852 1.00513 0.90702 1.10652 0.92347 0.91233 0.89959 0.88434 0.93904 0.92588 0.85906 0.86588 0.83814 0.85295 0.96263 0.91123 0.84813 1.02201 0.98812 0.92571 0.83934 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 10.16 127.77 1.30 2.60 16 2 N -0.65 -13.97 3.40 -747.15 -2.54 -16.51 16 3 C 0.09 1.63 9.39 127.77 1.20 2.83 16 4 C 0.20 5.48 6.55 38.30 0.25 5.74 16 5 C -0.21 -6.38 9.29 22.36 0.21 -6.18 16 6 C -0.07 -2.29 7.31 22.50 0.16 -2.13 16 7 C -0.13 -3.92 5.14 -20.10 -0.10 -4.03 16 8 C -0.10 -2.86 9.79 23.63 0.23 -2.63 16 9 C -0.15 -4.63 9.71 24.52 0.24 -4.39 16 10 C 0.08 3.02 4.44 85.56 0.38 3.40 16 11 N -0.69 -32.14 6.48 -521.99 -3.38 -35.52 16 12 C 0.21 12.00 5.44 85.56 0.47 12.47 16 13 C -0.54 -31.99 9.32 25.60 0.24 -31.75 16 14 H 0.07 3.80 7.81 -2.91 -0.02 3.77 16 15 C 0.00 0.00 5.46 84.65 0.46 0.46 16 16 N -0.94 -58.22 13.29 21.45 0.28 -57.94 16 17 Si 0.98 45.36 29.54 68.60 2.03 47.38 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C -0.06 -1.69 9.77 22.50 0.22 -1.47 16 22 C -0.21 -5.14 9.19 22.36 0.21 -4.94 16 23 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 1.02 6.17 -2.39 -0.01 1.01 16 25 H 0.08 0.92 7.92 -2.39 -0.02 0.91 16 26 H 0.10 1.18 7.79 -2.39 -0.02 1.16 16 27 H 0.04 0.88 7.95 -2.39 -0.02 0.86 16 28 H 0.06 0.96 7.93 -2.38 -0.02 0.94 16 29 H 0.12 3.40 6.71 -2.91 -0.02 3.38 16 30 H 0.12 3.72 6.35 -2.91 -0.02 3.70 16 31 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 32 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 33 H 0.02 0.77 7.99 -2.39 -0.02 0.75 16 34 H 0.07 3.00 4.85 -2.39 -0.01 2.99 16 35 H 0.33 14.57 8.71 -89.69 -0.78 13.78 16 36 H -0.04 -2.41 8.14 -2.38 -0.02 -2.43 16 37 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 38 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 40 H 0.14 2.79 6.12 -2.91 -0.02 2.77 16 Total: -1.00 -71.13 328.19 2.08 -69.04 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.24 Total: 23.56 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 5.46 Total: -30.01 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -5.64 Total: -109.97 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -71.13 2.08 -69.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835051044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.262 kcal (2) G-P(sol) polarization free energy of solvation -71.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds