Wall clock time and date at job start Mon Mar 30 2020 06:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47071 * 2 1 4 4 C 1.50703 * 109.47071 * 119.99094 * 2 1 3 5 5 C 1.37960 * 120.08245 * 305.01987 * 4 2 1 6 6 C 1.38350 * 120.15442 * 180.02562 * 5 4 2 7 7 C 1.38387 * 120.31712 * 0.02562 * 6 5 4 8 8 C 1.37912 * 120.15625 * 359.97438 * 7 6 5 9 9 C 1.39670 * 120.07757 * 125.03739 * 4 2 1 10 10 C 1.47486 * 120.15475 * 359.96170 * 9 4 2 11 11 N 1.29738 * 120.00087 * 174.51755 * 10 9 4 12 12 N 1.40105 * 120.00352 * 179.97438 * 11 10 9 13 13 C 1.46496 * 120.00285 * 179.97438 * 12 11 10 14 14 H 1.09005 * 109.46965 * 329.99881 * 13 12 11 15 15 C 1.52995 * 109.47323 * 89.99973 * 13 12 11 16 16 C 1.50701 * 109.47125 * 210.00000 * 13 12 11 17 17 H 1.08001 * 120.00011 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00151 * 179.97438 * 16 13 12 19 19 N 1.31521 * 120.00037 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00221 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.46954 * 90.00063 * 20 18 16 22 22 H 1.48502 * 109.47408 * 209.99983 * 20 18 16 23 23 H 1.48503 * 109.47094 * 330.00109 * 20 18 16 24 24 H 1.08999 * 109.47562 * 300.00117 * 1 2 3 25 25 H 1.09001 * 109.47082 * 60.00717 * 1 2 3 26 26 H 1.08998 * 109.46768 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47862 * 239.99306 * 2 1 3 28 28 H 1.09002 * 109.47722 * 59.99330 * 3 2 1 29 29 H 1.08993 * 109.47327 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46582 * 299.99590 * 3 2 1 31 31 H 1.07999 * 119.92129 * 0.04376 * 5 4 2 32 32 H 1.07997 * 119.83534 * 180.02562 * 6 5 4 33 33 H 1.07999 * 119.91923 * 180.27319 * 7 6 5 34 34 H 1.08000 * 120.07634 * 180.02562 * 8 7 6 35 35 H 1.08009 * 120.00209 * 354.51158 * 10 9 4 36 36 H 0.97001 * 120.00002 * 359.97438 * 12 11 10 37 37 H 1.09000 * 109.47282 * 180.02562 * 15 13 12 38 38 H 1.09000 * 109.47206 * 300.00119 * 15 13 12 39 39 H 1.08999 * 109.47187 * 59.99574 * 15 13 12 40 40 H 0.96996 * 120.00159 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7102 1.2306 5 6 1.6169 -0.3035 2.4817 6 6 2.0776 -0.9541 3.6125 7 6 2.9576 -2.0160 3.4978 8 6 3.3813 -2.4333 2.2535 9 6 2.9198 -1.7816 1.1072 10 6 3.3681 -2.2225 -0.2269 11 7 4.2725 -3.1463 -0.3349 12 7 4.6980 -3.5655 -1.6023 13 6 5.7197 -4.6083 -1.7241 14 1 6.3867 -4.5658 -0.8630 15 6 5.0444 -5.9801 -1.7790 16 6 6.5138 -4.3885 -2.9860 17 1 6.2810 -3.5551 -3.6322 18 6 7.5382 -5.2507 -3.3149 19 7 7.8228 -6.2647 -2.5271 20 14 8.5220 -4.9786 -4.8793 21 1 9.6856 -4.1037 -4.5864 22 1 9.0029 -6.2855 -5.3952 23 1 7.6597 -4.3305 -5.8999 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8898 28 1 1.6766 1.9565 0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9562 -0.8901 31 1 0.9303 0.5245 2.5787 32 1 1.7487 -0.6317 4.5894 33 1 3.3097 -2.5220 4.3845 34 1 4.0678 -3.2624 2.1654 35 1 2.9433 -1.7763 -1.1141 36 1 4.3161 -3.1653 -2.3990 37 1 5.8047 -6.7560 -1.8693 38 1 4.4701 -6.1391 -0.8664 39 1 4.3774 -6.0225 -2.6400 40 1 8.5432 -6.8715 -2.7586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848407110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:05 Heat of formation + Delta-G solvation = 47.652114 kcal Electronic energy + Delta-G solvation = -18670.724781 eV Core-core repulsion = 15871.573645 eV Total energy + Delta-G solvation = -2799.151137 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.47989 -36.38595 -35.30460 -34.11400 -31.89469 -30.12533 -29.63150 -27.17104 -27.02489 -25.24856 -23.61395 -22.98927 -20.54825 -20.02045 -19.53491 -17.03860 -16.71787 -15.87076 -15.11691 -14.78260 -14.57116 -13.85427 -13.80081 -13.62039 -13.57782 -13.03449 -12.69159 -12.51208 -12.36081 -12.03559 -11.93624 -11.48890 -11.37248 -11.16337 -11.04863 -10.88844 -10.67811 -10.60125 -10.47329 -10.25521 -10.21345 -9.41882 -9.06374 -8.73498 -8.56164 -8.47956 -6.79171 -6.15623 -4.24067 1.28089 1.60812 3.07743 3.23202 3.29587 3.31828 3.78334 4.15628 4.35032 4.71405 4.82024 5.14538 5.16986 5.19971 5.20914 5.22863 5.38925 5.56683 5.56895 5.70387 5.77157 5.87549 5.94876 6.04870 6.18675 6.21519 6.22382 6.28906 6.60043 6.67869 6.79054 6.80633 6.97843 7.04902 7.13476 7.21305 7.55669 7.75498 7.83745 8.12542 8.27773 8.83256 9.30053 9.42856 10.90303 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026891 B = 0.003965 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.975241 B = 7059.737330 C = 7655.318747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 C -0.142 4.142 4 C -0.072 4.072 5 C -0.116 4.116 6 C -0.130 4.130 7 C -0.124 4.124 8 C -0.099 4.099 9 C -0.003 4.003 10 C -0.019 4.019 11 N -0.191 5.191 12 N -0.622 5.622 13 C 0.296 3.704 14 H 0.042 0.958 15 C -0.150 4.150 16 C -0.531 4.531 17 H 0.060 0.940 18 C 0.067 3.933 19 N -0.886 5.886 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.274 1.274 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.131 0.869 35 H 0.104 0.896 36 H 0.368 0.632 37 H 0.090 0.910 38 H 0.012 0.988 39 H 0.026 0.974 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.580 11.315 7.757 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.199 4.199 4 C -0.075 4.075 5 C -0.134 4.134 6 C -0.150 4.150 7 C -0.142 4.142 8 C -0.119 4.119 9 C -0.005 4.005 10 C -0.227 4.227 11 N -0.004 5.004 12 N -0.358 5.358 13 C 0.194 3.806 14 H 0.060 0.940 15 C -0.209 4.209 16 C -0.570 4.570 17 H 0.078 0.922 18 C -0.136 4.136 19 N -0.523 5.523 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.199 1.199 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.204 0.796 37 H 0.109 0.891 38 H 0.031 0.969 39 H 0.045 0.955 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.671 10.350 8.208 17.627 hybrid contribution -0.023 0.659 -1.713 1.835 sum -11.694 11.009 6.495 17.324 Atomic orbital electron populations 1.21851 0.94609 1.01962 1.01539 1.20182 0.95663 0.95939 0.96305 1.21829 1.01473 0.95091 1.01490 1.19782 0.97365 0.95710 0.94660 1.20748 1.00678 1.00182 0.91801 1.21068 0.98814 0.97008 0.98078 1.21048 0.98352 0.97489 0.97350 1.21378 0.99304 0.99851 0.91410 1.18285 0.96046 0.94732 0.91454 1.23527 1.02134 1.01518 0.95495 1.73910 1.07624 1.08117 1.10713 1.49099 1.44834 1.43195 0.98650 1.18553 0.83304 0.81467 0.97270 0.94014 1.22201 1.00097 1.01790 0.96837 1.21227 1.16293 1.12378 1.07125 0.92209 1.24858 0.96792 0.94747 0.97206 1.69891 1.30171 1.15109 1.37174 0.86421 0.80161 0.77607 0.82764 1.20512 1.20998 1.19874 0.92635 0.92622 0.92516 0.89859 0.92684 0.92423 0.92615 0.86499 0.86681 0.86388 0.85134 0.87932 0.79571 0.89137 0.96856 0.95520 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.95 37.16 0.33 -1.01 16 2 C -0.06 -0.70 2.95 -91.77 -0.27 -0.97 16 3 C -0.14 -1.40 9.05 37.16 0.34 -1.07 16 4 C -0.07 -0.95 4.82 -104.19 -0.50 -1.45 16 5 C -0.12 -1.34 8.74 -39.64 -0.35 -1.69 16 6 C -0.13 -1.50 10.04 -39.49 -0.40 -1.89 16 7 C -0.12 -1.59 10.03 -39.65 -0.40 -1.99 16 8 C -0.10 -1.53 9.58 -39.16 -0.37 -1.90 16 9 C 0.00 -0.05 5.87 -105.05 -0.62 -0.66 16 10 C -0.02 -0.34 10.26 -14.67 -0.15 -0.49 16 11 N -0.19 -3.96 10.63 32.16 0.34 -3.62 16 12 N -0.62 -13.89 6.10 -5.88 -0.04 -13.93 16 13 C 0.30 7.59 3.23 -69.09 -0.22 7.37 16 14 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.15 -3.71 9.29 37.16 0.35 -3.36 16 16 C -0.53 -14.29 8.74 -34.44 -0.30 -14.59 16 17 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 18 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 19 N -0.89 -24.68 11.32 55.43 0.63 -24.06 16 20 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H 0.05 0.47 7.13 -51.93 -0.37 0.10 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.99 5.46 -51.93 -0.28 0.71 16 28 H 0.05 0.49 7.70 -51.93 -0.40 0.09 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.12 1.10 7.10 -52.49 -0.37 0.72 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.13 2.15 7.57 -52.49 -0.40 1.76 16 35 H 0.10 1.62 5.91 -52.48 -0.31 1.31 16 36 H 0.37 7.63 8.58 -182.59 -1.57 6.07 16 37 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 330.49 15.07 4.98 4.98 Total: -1.00 -28.22 330.49 -9.13 -37.36 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.36 Total: 5.52 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -2.66 Total: -21.99 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.93 Total: -41.61 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.22 -9.13 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848407110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.008 kcal (2) G-P(sol) polarization free energy of solvation -28.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds