Wall clock time and date at job start Mon Mar 30 2020 06:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47071 * 2 1 4 4 C 1.50703 * 109.47071 * 119.99094 * 2 1 3 5 5 C 1.37960 * 120.08245 * 305.01987 * 4 2 1 6 6 C 1.38350 * 120.15442 * 180.02562 * 5 4 2 7 7 C 1.38387 * 120.31712 * 0.02562 * 6 5 4 8 8 C 1.37912 * 120.15625 * 359.97438 * 7 6 5 9 9 C 1.39670 * 120.07757 * 125.03739 * 4 2 1 10 10 C 1.47486 * 120.15475 * 359.96170 * 9 4 2 11 11 N 1.29738 * 120.00087 * 174.51755 * 10 9 4 12 12 N 1.40105 * 120.00352 * 179.97438 * 11 10 9 13 13 C 1.46496 * 120.00285 * 179.97438 * 12 11 10 14 14 H 1.09005 * 109.46965 * 329.99881 * 13 12 11 15 15 C 1.52995 * 109.47323 * 89.99973 * 13 12 11 16 16 C 1.50701 * 109.47125 * 210.00000 * 13 12 11 17 17 H 1.08001 * 120.00011 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00151 * 179.97438 * 16 13 12 19 19 N 1.31521 * 120.00037 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00221 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.46954 * 90.00063 * 20 18 16 22 22 H 1.48502 * 109.47408 * 209.99983 * 20 18 16 23 23 H 1.48503 * 109.47094 * 330.00109 * 20 18 16 24 24 H 1.08999 * 109.47562 * 300.00117 * 1 2 3 25 25 H 1.09001 * 109.47082 * 60.00717 * 1 2 3 26 26 H 1.08998 * 109.46768 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47862 * 239.99306 * 2 1 3 28 28 H 1.09002 * 109.47722 * 59.99330 * 3 2 1 29 29 H 1.08993 * 109.47327 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46582 * 299.99590 * 3 2 1 31 31 H 1.07999 * 119.92129 * 0.04376 * 5 4 2 32 32 H 1.07997 * 119.83534 * 180.02562 * 6 5 4 33 33 H 1.07999 * 119.91923 * 180.27319 * 7 6 5 34 34 H 1.08000 * 120.07634 * 180.02562 * 8 7 6 35 35 H 1.08009 * 120.00209 * 354.51158 * 10 9 4 36 36 H 0.97001 * 120.00002 * 359.97438 * 12 11 10 37 37 H 1.09000 * 109.47282 * 180.02562 * 15 13 12 38 38 H 1.09000 * 109.47206 * 300.00119 * 15 13 12 39 39 H 1.08999 * 109.47187 * 59.99574 * 15 13 12 40 40 H 0.96996 * 120.00159 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7102 1.2306 5 6 1.6169 -0.3035 2.4817 6 6 2.0776 -0.9541 3.6125 7 6 2.9576 -2.0160 3.4978 8 6 3.3813 -2.4333 2.2535 9 6 2.9198 -1.7816 1.1072 10 6 3.3681 -2.2225 -0.2269 11 7 4.2725 -3.1463 -0.3349 12 7 4.6980 -3.5655 -1.6023 13 6 5.7197 -4.6083 -1.7241 14 1 6.3867 -4.5658 -0.8630 15 6 5.0444 -5.9801 -1.7790 16 6 6.5138 -4.3885 -2.9860 17 1 6.2810 -3.5551 -3.6322 18 6 7.5382 -5.2507 -3.3149 19 7 7.8228 -6.2647 -2.5271 20 14 8.5220 -4.9786 -4.8793 21 1 9.6856 -4.1037 -4.5864 22 1 9.0029 -6.2855 -5.3952 23 1 7.6597 -4.3305 -5.8999 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8898 28 1 1.6766 1.9565 0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9562 -0.8901 31 1 0.9303 0.5245 2.5787 32 1 1.7487 -0.6317 4.5894 33 1 3.3097 -2.5220 4.3845 34 1 4.0678 -3.2624 2.1654 35 1 2.9433 -1.7763 -1.1141 36 1 4.3161 -3.1653 -2.3990 37 1 5.8047 -6.7560 -1.8693 38 1 4.4701 -6.1391 -0.8664 39 1 4.3774 -6.0225 -2.6400 40 1 8.5432 -6.8715 -2.7586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848407110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:05 Heat of formation + Delta-G solvation = 33.097576 kcal Electronic energy + Delta-G solvation = -18671.355914 eV Core-core repulsion = 15871.573645 eV Total energy + Delta-G solvation = -2799.782269 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.53049 -38.02909 -36.20796 -35.91559 -33.59009 -31.61887 -30.62638 -28.66692 -27.91390 -27.31508 -24.77776 -24.10638 -22.32963 -21.36744 -20.57304 -18.80906 -17.90549 -17.40551 -16.90614 -15.97581 -15.72981 -15.36641 -14.80471 -14.69482 -14.56686 -14.46351 -14.32712 -14.08290 -13.50821 -13.21795 -12.96911 -12.89589 -12.82332 -12.74768 -12.46798 -12.30246 -12.21777 -12.08550 -11.97179 -11.65040 -11.43309 -11.14753 -10.72914 -10.60981 -9.94577 -9.57084 -8.39908 -8.18773 -6.37137 0.12898 0.57539 1.41817 1.42351 1.53106 1.77124 2.15465 2.45680 3.05250 3.09410 3.77516 3.87597 3.95828 4.19319 4.35749 4.38574 4.45888 4.53320 4.65414 4.71585 4.83034 4.88032 4.95223 5.03230 5.05558 5.06522 5.10787 5.13439 5.29299 5.31346 5.40692 5.46127 5.50849 5.65059 5.70228 5.72300 5.81726 5.91554 6.16279 6.18545 6.38491 6.81629 7.34444 7.74070 8.85573 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026891 B = 0.003965 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.975241 B = 7059.737330 C = 7655.318747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 C -0.139 4.139 4 C -0.064 4.064 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.132 4.132 8 C -0.116 4.116 9 C -0.044 4.044 10 C 0.021 3.979 11 N -0.242 5.242 12 N -0.640 5.640 13 C 0.307 3.693 14 H 0.000 1.000 15 C -0.135 4.135 16 C -0.549 4.549 17 H 0.061 0.939 18 C 0.019 3.981 19 N -0.915 5.915 20 Si 0.972 3.028 21 H -0.276 1.276 22 H -0.279 1.279 23 H -0.266 1.266 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.137 0.863 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.372 0.628 37 H 0.070 0.930 38 H 0.016 0.984 39 H 0.030 0.970 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.501 13.778 8.373 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.084 4.084 3 C -0.196 4.196 4 C -0.067 4.067 5 C -0.134 4.134 6 C -0.133 4.133 7 C -0.150 4.150 8 C -0.137 4.137 9 C -0.046 4.046 10 C -0.188 4.188 11 N -0.052 5.052 12 N -0.377 5.377 13 C 0.203 3.797 14 H 0.018 0.982 15 C -0.194 4.194 16 C -0.588 4.588 17 H 0.079 0.921 18 C -0.181 4.181 19 N -0.553 5.553 20 Si 0.796 3.204 21 H -0.202 1.202 22 H -0.204 1.204 23 H -0.190 1.190 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.155 0.845 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.209 0.791 37 H 0.088 0.912 38 H 0.035 0.965 39 H 0.050 0.950 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.606 12.820 8.833 20.676 hybrid contribution 0.387 0.077 -1.671 1.717 sum -13.219 12.897 7.162 19.808 Atomic orbital electron populations 1.21828 0.92861 1.01830 1.03043 1.20248 0.97065 0.96365 0.94749 1.21812 1.00437 0.94320 1.03007 1.20065 0.95815 0.94378 0.96418 1.21149 1.00598 1.00721 0.90915 1.21530 0.96697 0.95258 0.99814 1.21301 0.98671 0.98228 0.96799 1.21371 0.99617 0.99756 0.92905 1.18401 0.98729 0.97106 0.90374 1.24118 0.98924 0.98451 0.97316 1.73968 1.10417 1.10965 1.09818 1.48561 1.45661 1.44028 0.99460 1.18129 0.83588 0.82810 0.95172 0.98244 1.22011 0.99350 1.00988 0.97094 1.21510 1.17019 1.12622 1.07626 0.92092 1.25722 0.97681 0.94350 1.00363 1.70019 1.30648 1.15805 1.38804 0.85356 0.78521 0.77657 0.78863 1.20200 1.20379 1.19013 0.91016 0.91302 0.93467 0.91319 0.91116 0.94039 0.91219 0.83248 0.83096 0.84493 0.87625 0.86418 0.79056 0.91171 0.96511 0.95048 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.95 71.98 0.64 -1.51 16 2 C -0.07 -1.31 2.95 -11.54 -0.03 -1.35 16 3 C -0.14 -2.35 9.05 71.98 0.65 -1.70 16 4 C -0.06 -1.53 4.82 -19.58 -0.09 -1.63 16 5 C -0.12 -2.23 8.74 22.23 0.19 -2.03 16 6 C -0.11 -2.17 10.04 22.33 0.22 -1.95 16 7 C -0.13 -3.15 10.03 22.23 0.22 -2.93 16 8 C -0.12 -3.62 9.58 22.55 0.22 -3.40 16 9 C -0.04 -1.36 5.87 -20.14 -0.12 -1.48 16 10 C 0.02 0.76 10.26 87.44 0.90 1.66 16 11 N -0.24 -10.59 10.63 -52.17 -0.55 -11.15 16 12 N -0.64 -30.08 6.10 -172.53 -1.05 -31.14 16 13 C 0.31 16.58 3.23 44.24 0.14 16.72 16 14 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 15 C -0.14 -7.00 9.29 71.98 0.67 -6.33 16 16 C -0.55 -30.48 8.74 25.60 0.22 -30.26 16 17 H 0.06 3.28 7.79 -2.91 -0.02 3.26 16 18 C 0.02 1.05 5.30 84.65 0.45 1.50 16 19 N -0.91 -52.49 11.32 21.45 0.24 -52.25 16 20 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 24 H 0.07 0.89 7.13 -2.39 -0.02 0.87 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 1.55 5.46 -2.39 -0.01 1.54 16 28 H 0.07 0.98 7.70 -2.39 -0.02 0.96 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 31 H 0.15 1.94 7.10 -2.91 -0.02 1.92 16 32 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 34 H 0.11 3.75 7.57 -2.91 -0.02 3.73 16 35 H 0.12 3.75 5.91 -2.91 -0.02 3.73 16 36 H 0.37 16.11 8.58 -213.32 -1.83 14.28 16 37 H 0.07 3.90 6.07 -2.39 -0.01 3.88 16 38 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -63.51 330.49 4.14 -59.37 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.81 Total: 24.83 kcal Atomic # 6 Polarization: -38.97 SS G_CDS: 4.29 Total: -34.68 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -1.36 Total: -94.53 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -63.51 4.14 -59.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848407110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.467 kcal (2) G-P(sol) polarization free energy of solvation -63.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds