Wall clock time and date at job start Mon Mar 30 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09009 * 109.46864 * 2 1 4 4 N 1.46495 * 109.47051 * 240.00626 * 2 1 3 5 5 C 1.39671 * 120.00488 * 85.00013 * 4 2 1 6 6 C 1.38914 * 120.07446 * 359.71912 * 5 4 2 7 7 C 1.38098 * 119.92839 * 179.75105 * 6 5 4 8 8 C 1.38290 * 120.07098 * 0.55178 * 7 6 5 9 9 C 1.50706 * 119.92522 * 179.72481 * 8 7 6 10 10 C 1.50691 * 109.46944 * 269.97682 * 9 8 7 11 11 H 1.08002 * 120.00589 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99978 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99748 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00201 * 180.02562 * 12 10 9 15 15 H 1.48509 * 109.47062 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47083 * 120.00443 * 14 12 10 17 17 H 1.48499 * 109.47325 * 240.00708 * 14 12 10 18 18 C 1.38288 * 120.15261 * 359.70090 * 8 7 6 19 19 C 1.38101 * 120.07141 * 0.02562 * 18 8 7 20 20 C 1.52995 * 109.47429 * 120.00143 * 2 1 3 21 21 C 1.53940 * 113.73336 * 281.93728 * 20 2 1 22 22 N 1.47966 * 86.17848 * 221.91635 * 21 20 2 23 23 C 1.47963 * 90.76104 * 24.69152 * 22 21 20 24 24 H 1.09001 * 109.46909 * 175.95165 * 1 2 3 25 25 H 1.08997 * 109.47089 * 295.94997 * 1 2 3 26 26 H 1.08996 * 109.47031 * 55.94781 * 1 2 3 27 27 H 0.96998 * 120.00034 * 264.99336 * 4 2 1 28 28 H 1.07998 * 120.03521 * 0.02562 * 6 5 4 29 29 H 1.08001 * 119.96884 * 180.27760 * 7 6 5 30 30 H 1.09004 * 109.46968 * 29.98072 * 9 8 7 31 31 H 1.08998 * 109.46959 * 149.97759 * 9 8 7 32 32 H 0.97001 * 119.99769 * 179.97438 * 13 12 10 33 33 H 1.07998 * 119.96134 * 180.02562 * 18 8 7 34 34 H 1.07996 * 120.03660 * 179.97438 * 19 18 8 35 35 H 1.08999 * 112.93626 * 53.64165 * 20 2 1 36 36 H 1.08998 * 113.75758 * 336.23151 * 21 20 2 37 37 H 1.08997 * 113.75625 * 107.60081 * 21 20 2 38 38 H 1.00894 * 110.99916 * 271.79977 * 22 21 20 39 39 H 1.09006 * 113.75437 * 220.99510 * 23 22 21 40 40 H 1.08998 * 113.76107 * 89.62690 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1518 0.0063 -2.3993 6 6 1.8164 1.3528 -2.4649 7 6 1.9543 2.0401 -3.6547 8 6 2.4150 1.3866 -4.7830 9 6 2.5584 2.1383 -6.0813 10 6 1.2719 2.0452 -6.8603 11 1 0.4339 1.4970 -6.4558 12 6 1.1641 2.6609 -8.0894 13 7 2.1842 3.3290 -8.5819 14 14 -0.4309 2.5462 -9.0548 15 1 -1.4177 1.7446 -8.2871 16 1 -0.9714 3.9105 -9.2818 17 1 -0.1720 1.8924 -10.3628 18 6 2.7449 0.0450 -4.7226 19 6 2.6146 -0.6469 -3.5346 20 6 2.0401 -0.7212 1.2492 21 6 1.9719 0.1321 2.5286 22 7 3.3075 -0.4185 2.8484 23 6 3.5697 -0.6686 1.4138 24 1 -0.3633 -1.0251 -0.0726 25 1 -0.3633 0.4497 0.9240 26 1 -0.3633 0.5754 -0.8514 27 1 2.2491 -1.6316 -1.1527 28 1 1.4523 1.8626 -1.5852 29 1 1.6980 3.0880 -3.7052 30 1 2.7820 3.1846 -5.8725 31 1 3.3692 1.7031 -6.6654 32 1 2.1085 3.7618 -9.4466 33 1 3.1047 -0.4622 -5.6056 34 1 2.8720 -1.6947 -3.4882 35 1 1.6207 -1.7208 1.3636 36 1 1.9730 1.2058 2.3409 37 1 1.1910 -0.1788 3.2226 38 1 3.2285 -1.2857 3.3581 39 1 4.0655 -1.6193 1.2173 40 1 4.0381 0.1709 0.9001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925824360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:00 Heat of formation + Delta-G solvation = 29.652364 kcal Electronic energy + Delta-G solvation = -18764.566017 eV Core-core repulsion = 15964.634353 eV Total energy + Delta-G solvation = -2799.931665 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -40.99696 -39.99096 -37.03604 -35.12832 -33.02935 -31.63679 -30.78316 -28.07800 -27.44433 -26.73222 -24.83454 -23.88892 -22.54726 -21.39150 -20.94772 -18.49171 -18.14495 -17.49116 -17.03546 -16.66931 -15.87361 -15.33287 -15.27028 -14.98020 -14.51641 -14.38144 -14.07781 -14.04345 -13.73595 -13.48697 -13.34363 -13.22518 -13.16013 -12.87360 -12.57891 -12.46737 -12.29749 -11.70186 -11.66054 -11.54203 -11.49666 -11.32522 -10.58928 -10.57901 -9.66958 -9.44171 -8.29444 -7.93045 -6.30293 0.68546 0.90780 1.39509 1.39639 1.53698 2.41420 2.51806 3.11445 3.12488 3.17158 3.56242 3.70688 4.10128 4.20704 4.24574 4.28885 4.41730 4.52086 4.57961 4.68267 4.72963 4.79138 4.80079 4.82891 4.92976 4.96940 5.06441 5.15285 5.20806 5.25329 5.37827 5.39475 5.41518 5.57101 5.71343 5.82293 6.05817 6.24674 6.25637 6.43058 6.61724 6.83384 7.01049 7.38055 8.92126 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041126 B = 0.003590 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.677461 B = 7797.788311 C = 8010.174268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.160 3.840 3 H 0.069 0.931 4 N -0.736 5.736 5 C 0.203 3.797 6 C -0.194 4.194 7 C -0.091 4.091 8 C -0.124 4.124 9 C 0.063 3.937 10 C -0.525 4.525 11 H 0.052 0.948 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.966 3.034 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.275 1.275 18 C -0.090 4.090 19 C -0.191 4.191 20 C -0.149 4.149 21 C 0.030 3.970 22 N -0.678 5.678 23 C 0.025 3.975 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.040 0.960 27 H 0.403 0.597 28 H 0.132 0.868 29 H 0.107 0.893 30 H -0.004 1.004 31 H -0.003 1.003 32 H 0.265 0.735 33 H 0.109 0.891 34 H 0.139 0.861 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.345 0.655 39 H 0.080 0.920 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 -10.770 22.751 25.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.054 3.946 3 H 0.087 0.913 4 N -0.366 5.366 5 C 0.101 3.899 6 C -0.217 4.217 7 C -0.110 4.110 8 C -0.126 4.126 9 C 0.026 3.974 10 C -0.563 4.563 11 H 0.070 0.930 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.790 3.210 15 H -0.190 1.190 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.109 4.109 19 C -0.214 4.214 20 C -0.169 4.169 21 C -0.100 4.100 22 N -0.305 5.305 23 C -0.105 4.105 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.239 0.761 28 H 0.150 0.850 29 H 0.125 0.875 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.156 0.844 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.161 0.839 39 H 0.099 0.901 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.388 -9.904 23.032 25.110 hybrid contribution -1.029 -0.714 -1.516 1.967 sum -2.417 -10.619 21.516 24.115 Atomic orbital electron populations 1.22246 0.95730 1.02284 1.02144 1.20922 0.93636 0.96370 0.83667 0.91260 1.44474 1.74009 1.12144 1.06018 1.17641 0.94373 0.91151 0.86747 1.20669 1.09221 0.93754 0.98018 1.20827 0.98280 0.99422 0.92435 1.20126 1.01519 0.95292 0.95688 1.17979 0.95749 0.93511 0.90130 1.21481 0.99109 1.32524 1.03163 0.92975 1.25967 1.00276 0.94777 0.98672 1.70099 1.32517 1.35349 1.19323 0.85384 0.79158 0.78125 0.78301 1.18997 1.20125 1.20100 1.20829 0.98994 0.93506 0.97537 1.20657 1.08508 1.00465 0.91731 1.24470 0.96700 1.01029 0.94723 1.23658 0.91802 1.00151 0.94433 1.65028 1.23815 1.29778 1.11923 1.23556 0.95146 1.01974 0.89809 0.92237 0.90290 0.94049 0.76125 0.85013 0.87499 0.98549 0.98463 0.92660 0.87253 0.84370 0.87384 0.88908 0.88991 0.83913 0.90110 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.40 71.98 0.68 -2.02 16 2 C 0.16 2.64 1.98 44.99 0.09 2.73 16 3 H 0.07 1.33 6.40 -2.38 -0.02 1.32 16 4 N -0.74 -14.90 5.12 -318.95 -1.63 -16.53 16 5 C 0.20 5.97 6.64 38.22 0.25 6.22 16 6 C -0.19 -6.41 8.86 22.40 0.20 -6.21 16 7 C -0.09 -3.74 9.69 22.25 0.22 -3.53 16 8 C -0.12 -5.80 5.07 -19.84 -0.10 -5.90 16 9 C 0.06 3.57 5.10 29.10 0.15 3.72 16 10 C -0.52 -31.24 9.09 25.60 0.23 -31.01 16 11 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 12 C 0.00 0.04 5.46 84.66 0.46 0.50 16 13 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 14 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 15 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 18 C -0.09 -3.66 9.69 22.25 0.22 -3.44 16 19 C -0.19 -6.15 9.90 22.40 0.22 -5.92 16 20 C -0.15 -1.73 3.34 -10.15 -0.03 -1.77 16 21 C 0.03 0.34 8.28 86.41 0.72 1.05 16 22 N -0.68 -9.31 8.56 -524.10 -4.48 -13.80 16 23 C 0.03 0.35 8.34 86.40 0.72 1.07 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.08 0.98 8.00 -2.39 -0.02 0.96 16 26 H 0.04 0.87 7.64 -2.39 -0.02 0.86 16 27 H 0.40 6.63 8.62 -92.71 -0.80 5.83 16 28 H 0.13 3.68 6.04 -2.91 -0.02 3.66 16 29 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 30 H 0.00 -0.23 8.08 -2.38 -0.02 -0.25 16 31 H 0.00 -0.18 8.08 -2.39 -0.02 -0.20 16 32 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 34 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.20 8.03 -2.39 -0.02 1.18 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 38 H 0.35 3.46 8.89 -89.70 -0.80 2.66 16 39 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.08 1.47 8.10 -2.39 -0.02 1.45 16 Total: -1.00 -68.71 329.31 -0.35 -69.07 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -0.56 Total: 15.80 kcal Atomic # 6 Polarization: -48.52 SS G_CDS: 4.02 Total: -44.50 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -5.83 Total: -87.92 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -68.71 -0.35 -69.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925824360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.720 kcal (2) G-P(sol) polarization free energy of solvation -68.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds