Wall clock time and date at job start Mon Mar 30 2020 06:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48496 * 109.47516 * 270.00614 * 3 2 1 5 5 H 1.48510 * 109.46852 * 30.00527 * 3 2 1 6 6 H 1.48505 * 109.47166 * 149.99960 * 3 2 1 7 7 C 1.37878 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99324 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00458 * 179.97438 * 7 2 1 10 10 C 1.52991 * 109.47318 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47244 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46687 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99141 * 174.85605 * 12 11 10 14 14 H 1.08991 * 109.44060 * 34.58521 * 13 12 11 15 15 C 1.53076 * 109.43653 * 274.71359 * 13 12 11 16 16 C 1.53400 * 108.30894 * 191.76512 * 15 13 12 17 17 O 1.42828 * 108.37727 * 64.70645 * 16 15 13 18 18 C 1.35839 * 117.84774 * 310.76595 * 17 16 15 19 19 C 1.39146 * 118.49966 * 197.02800 * 18 17 16 20 20 C 1.37966 * 120.21960 * 180.42935 * 19 18 17 21 21 C 1.38293 * 119.95384 * 0.02562 * 20 19 18 22 22 C 1.38105 * 119.98473 * 359.91436 * 21 20 19 23 23 C 1.38376 * 121.80811 * 17.31251 * 18 17 16 24 24 H 0.97003 * 119.99658 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46567 * 59.99779 * 9 7 2 26 26 H 1.09002 * 109.47176 * 300.00309 * 9 7 2 27 27 H 1.09005 * 109.46895 * 299.99766 * 10 9 7 28 28 H 1.09001 * 109.47358 * 59.99533 * 10 9 7 29 29 H 1.08996 * 109.46736 * 299.99482 * 11 10 9 30 30 H 1.08991 * 109.46780 * 59.99649 * 11 10 9 31 31 H 1.00893 * 111.00272 * 298.80122 * 12 11 10 32 32 H 1.09000 * 109.69352 * 311.46580 * 15 13 12 33 33 H 1.08993 * 109.69313 * 72.05726 * 15 13 12 34 34 H 1.09001 * 109.68108 * 304.98242 * 16 15 13 35 35 H 1.09007 * 109.68430 * 184.43017 * 16 15 13 36 36 H 1.08002 * 119.88591 * 0.41633 * 19 18 17 37 37 H 1.08000 * 120.02453 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.00594 * 179.89225 * 21 20 19 39 39 H 1.08001 * 119.83725 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 7 6.0412 -4.0216 -0.0027 13 6 7.5045 -4.0625 -0.1257 14 1 7.9365 -3.2099 0.3982 15 6 7.8933 -4.0006 -1.6049 16 6 9.3844 -4.3399 -1.7259 17 8 9.5733 -5.6933 -1.3103 18 6 9.0218 -6.0775 -0.1298 19 6 9.4781 -7.2491 0.4661 20 6 8.9365 -7.6771 1.6607 21 6 7.9364 -6.9405 2.2687 22 6 7.4819 -5.7765 1.6807 23 6 8.0235 -5.3406 0.4828 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8746 -0.6800 -0.8911 27 1 3.6586 -3.1509 0.8876 28 1 3.6578 -3.1498 -0.8924 29 1 5.9149 -2.1220 -0.8918 30 1 5.9149 -2.1234 0.8881 31 1 5.7338 -4.5140 0.8225 32 1 7.3050 -4.7236 -2.1699 33 1 7.7124 -2.9973 -1.9906 34 1 9.9653 -3.6750 -1.0866 35 1 9.7041 -4.2259 -2.7617 36 1 10.2586 -7.8255 -0.0082 37 1 9.2933 -8.5868 2.1206 38 1 7.5106 -7.2757 3.2029 39 1 6.7011 -5.2028 2.1578 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049856499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:00 Heat of formation + Delta-G solvation = -24.029785 kcal Electronic energy + Delta-G solvation = -18966.337577 eV Core-core repulsion = 16066.359417 eV Total energy + Delta-G solvation = -2899.978159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92607 -37.67666 -36.97897 -34.18092 -32.38583 -30.99726 -30.53649 -30.17324 -26.74589 -24.69397 -23.75844 -22.56988 -21.75138 -20.31431 -19.82785 -18.15395 -16.88662 -16.67748 -16.24274 -15.51311 -15.20152 -14.74416 -14.50003 -14.12319 -14.06192 -13.84597 -13.48694 -13.20843 -12.60395 -12.56729 -12.16832 -12.08244 -11.77896 -11.53213 -11.13060 -11.06226 -10.87510 -10.77387 -10.65483 -9.95442 -9.75087 -9.59017 -9.17501 -9.10893 -8.53468 -8.46867 -8.16013 -6.03583 -4.01408 1.11829 1.25315 3.10728 3.30148 3.37380 3.40608 3.55427 4.20830 4.38412 4.45206 4.55577 4.60420 4.87288 4.92879 4.99901 5.11888 5.23064 5.29741 5.30365 5.40264 5.43805 5.59349 5.71796 5.76031 5.79421 6.01985 6.10594 6.14121 6.27328 6.34396 6.52561 6.54159 6.59698 6.90634 7.14498 7.26410 7.33292 7.40790 7.50343 7.80575 8.55634 9.02103 9.58894 11.10016 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033072 B = 0.003668 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.434604 B = 7632.642384 C = 8176.684724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.098 4.098 11 C 0.055 3.945 12 N -0.681 5.681 13 C 0.129 3.871 14 H 0.055 0.945 15 C -0.149 4.149 16 C 0.062 3.938 17 O -0.317 6.317 18 C 0.139 3.861 19 C -0.152 4.152 20 C -0.088 4.088 21 C -0.151 4.151 22 C -0.082 4.082 23 C -0.155 4.155 24 H 0.263 0.737 25 H 0.013 0.987 26 H 0.011 0.989 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.025 0.975 31 H 0.342 0.658 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.839 -11.943 1.278 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.136 4.136 11 C -0.073 4.073 12 N -0.314 5.314 13 C 0.020 3.980 14 H 0.073 0.927 15 C -0.188 4.188 16 C -0.013 4.013 17 O -0.231 6.231 18 C 0.094 3.906 19 C -0.171 4.171 20 C -0.107 4.107 21 C -0.169 4.169 22 C -0.101 4.101 23 C -0.157 4.157 24 H 0.072 0.928 25 H 0.031 0.969 26 H 0.029 0.971 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.163 0.837 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 21.667 -12.005 0.475 24.775 hybrid contribution 0.378 1.471 0.941 1.787 sum 22.045 -10.534 1.415 24.473 Atomic orbital electron populations 1.69922 1.06295 1.26833 1.51301 1.25048 0.94739 0.99171 0.94650 0.86764 0.80288 0.83645 0.78470 1.20301 1.21414 1.19132 1.21151 0.89509 0.94477 1.50563 0.91010 1.19542 0.97198 0.92243 0.96069 1.21428 0.90855 0.99634 1.01695 1.22242 0.97924 0.87284 0.99897 1.60638 1.07496 1.16552 1.46706 1.20260 0.89400 0.93210 0.95161 0.92746 1.22269 0.95475 1.04144 0.96874 1.23022 0.96495 0.80664 1.01130 1.85969 1.72355 1.30053 1.34768 1.18670 0.92263 0.94231 0.85470 1.20585 1.02933 0.96878 0.96665 1.20926 0.96003 0.99285 0.94437 1.21011 0.98936 0.95915 1.01023 1.20876 0.98643 0.96405 0.94145 1.19917 0.98929 0.99208 0.97603 0.92767 0.96870 0.97092 0.92997 0.91880 0.91399 0.95641 0.83691 0.89300 0.89744 0.91967 0.87260 0.85313 0.85467 0.85757 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.99 9.66 -34.44 -0.33 -15.33 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.30 4.04 -27.89 -0.11 -0.41 16 10 C -0.10 -1.95 5.46 -26.73 -0.15 -2.09 16 11 C 0.05 0.88 5.46 -3.82 -0.02 0.86 16 12 N -0.68 -9.68 6.28 -107.87 -0.68 -10.36 16 13 C 0.13 1.61 2.65 -68.79 -0.18 1.42 16 14 H 0.05 0.67 7.85 -51.93 -0.41 0.26 16 15 C -0.15 -1.67 5.60 -26.48 -0.15 -1.82 16 16 C 0.06 0.59 7.03 37.36 0.26 0.85 16 17 O -0.32 -3.77 10.27 -19.23 -0.20 -3.96 16 18 C 0.14 1.70 6.47 -39.19 -0.25 1.44 16 19 C -0.15 -1.61 9.94 -39.34 -0.39 -2.00 16 20 C -0.09 -0.82 10.04 -39.66 -0.40 -1.22 16 21 C -0.15 -1.48 10.04 -39.61 -0.40 -1.88 16 22 C -0.08 -0.92 8.92 -39.53 -0.35 -1.28 16 23 C -0.16 -1.91 5.56 -104.44 -0.58 -2.49 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 26 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.07 7.60 -51.93 -0.39 0.67 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.34 4.64 6.23 -39.30 -0.24 4.40 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 0.88 7.74 -51.93 -0.40 0.48 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.11 0.79 8.14 -51.92 -0.42 0.36 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 1.28 6.62 -52.49 -0.35 0.94 16 LS Contribution 315.18 15.07 4.75 4.75 Total: -1.00 -31.80 315.18 -9.13 -40.93 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.95 Total: 1.00 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -3.15 Total: -22.12 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.10 Total: -37.78 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.20 Total: -3.96 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.80 -9.13 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049856499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.901 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds