Wall clock time and date at job start Mon Mar 30 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48496 * 109.47516 * 270.00614 * 3 2 1 5 5 H 1.48510 * 109.46852 * 30.00527 * 3 2 1 6 6 H 1.48505 * 109.47166 * 149.99960 * 3 2 1 7 7 C 1.37878 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99324 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00458 * 179.97438 * 7 2 1 10 10 C 1.52991 * 109.47318 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47244 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46687 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99141 * 174.85605 * 12 11 10 14 14 H 1.08991 * 109.44060 * 34.58521 * 13 12 11 15 15 C 1.53076 * 109.43653 * 274.71359 * 13 12 11 16 16 C 1.53400 * 108.30894 * 191.76512 * 15 13 12 17 17 O 1.42828 * 108.37727 * 64.70645 * 16 15 13 18 18 C 1.35839 * 117.84774 * 310.76595 * 17 16 15 19 19 C 1.39146 * 118.49966 * 197.02800 * 18 17 16 20 20 C 1.37966 * 120.21960 * 180.42935 * 19 18 17 21 21 C 1.38293 * 119.95384 * 0.02562 * 20 19 18 22 22 C 1.38105 * 119.98473 * 359.91436 * 21 20 19 23 23 C 1.38376 * 121.80811 * 17.31251 * 18 17 16 24 24 H 0.97003 * 119.99658 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46567 * 59.99779 * 9 7 2 26 26 H 1.09002 * 109.47176 * 300.00309 * 9 7 2 27 27 H 1.09005 * 109.46895 * 299.99766 * 10 9 7 28 28 H 1.09001 * 109.47358 * 59.99533 * 10 9 7 29 29 H 1.08996 * 109.46736 * 299.99482 * 11 10 9 30 30 H 1.08991 * 109.46780 * 59.99649 * 11 10 9 31 31 H 1.00893 * 111.00272 * 298.80122 * 12 11 10 32 32 H 1.09000 * 109.69352 * 311.46580 * 15 13 12 33 33 H 1.08993 * 109.69313 * 72.05726 * 15 13 12 34 34 H 1.09001 * 109.68108 * 304.98242 * 16 15 13 35 35 H 1.09007 * 109.68430 * 184.43017 * 16 15 13 36 36 H 1.08002 * 119.88591 * 0.41633 * 19 18 17 37 37 H 1.08000 * 120.02453 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.00594 * 179.89225 * 21 20 19 39 39 H 1.08001 * 119.83725 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 7 6.0412 -4.0216 -0.0027 13 6 7.5045 -4.0625 -0.1257 14 1 7.9365 -3.2099 0.3982 15 6 7.8933 -4.0006 -1.6049 16 6 9.3844 -4.3399 -1.7259 17 8 9.5733 -5.6933 -1.3103 18 6 9.0218 -6.0775 -0.1298 19 6 9.4781 -7.2491 0.4661 20 6 8.9365 -7.6771 1.6607 21 6 7.9364 -6.9405 2.2687 22 6 7.4819 -5.7765 1.6807 23 6 8.0235 -5.3406 0.4828 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8746 -0.6800 -0.8911 27 1 3.6586 -3.1509 0.8876 28 1 3.6578 -3.1498 -0.8924 29 1 5.9149 -2.1220 -0.8918 30 1 5.9149 -2.1234 0.8881 31 1 5.7338 -4.5140 0.8225 32 1 7.3050 -4.7236 -2.1699 33 1 7.7124 -2.9973 -1.9906 34 1 9.9653 -3.6750 -1.0866 35 1 9.7041 -4.2259 -2.7617 36 1 10.2586 -7.8255 -0.0082 37 1 9.2933 -8.5868 2.1206 38 1 7.5106 -7.2757 3.2029 39 1 6.7011 -5.2028 2.1578 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049856499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:58 Heat of formation + Delta-G solvation = -44.186278 kcal Electronic energy + Delta-G solvation = -18967.211628 eV Core-core repulsion = 16066.359417 eV Total energy + Delta-G solvation = -2900.852210 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.75111 -38.47364 -38.09629 -35.85156 -34.16374 -32.17939 -31.52149 -31.10503 -28.38373 -25.67852 -24.79967 -23.76053 -22.87012 -21.93178 -20.79525 -19.07608 -18.82812 -17.61908 -17.16062 -16.65517 -16.37196 -16.02869 -15.65525 -15.45650 -15.16441 -14.81557 -14.69347 -14.43978 -14.10494 -13.70482 -13.55313 -13.29778 -12.93193 -12.72281 -12.58893 -12.39631 -11.92178 -11.83593 -11.77977 -11.68276 -11.47946 -11.38527 -11.19155 -10.76820 -9.97220 -9.43479 -9.07120 -8.29721 -6.34356 0.31984 0.45092 1.35841 1.37961 1.49996 2.34833 2.36207 2.74326 3.05475 3.16290 3.52909 3.71357 3.81378 4.06074 4.14152 4.19759 4.23428 4.28708 4.37878 4.52181 4.55158 4.60692 4.66320 4.68908 4.83505 4.91266 4.97979 5.02005 5.09822 5.14393 5.33381 5.46966 5.50812 5.57370 5.59751 5.65728 5.84350 6.03234 6.28539 6.36581 6.46130 6.74154 7.30253 8.87427 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033072 B = 0.003668 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.434604 B = 7632.642384 C = 8176.684724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.535 4.535 8 H 0.028 0.972 9 C -0.009 4.009 10 C -0.090 4.090 11 C 0.069 3.931 12 N -0.688 5.688 13 C 0.130 3.870 14 H 0.058 0.942 15 C -0.147 4.147 16 C 0.062 3.938 17 O -0.330 6.330 18 C 0.120 3.880 19 C -0.161 4.161 20 C -0.085 4.085 21 C -0.154 4.154 22 C -0.096 4.096 23 C -0.173 4.173 24 H 0.266 0.734 25 H 0.021 0.979 26 H 0.020 0.980 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.344 0.656 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.133 0.867 36 H 0.143 0.857 37 H 0.157 0.843 38 H 0.145 0.855 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.518 -11.552 1.639 27.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.128 4.128 11 C -0.060 4.060 12 N -0.321 5.321 13 C 0.021 3.979 14 H 0.076 0.924 15 C -0.186 4.186 16 C -0.013 4.013 17 O -0.244 6.244 18 C 0.075 3.925 19 C -0.180 4.180 20 C -0.102 4.102 21 C -0.172 4.172 22 C -0.115 4.115 23 C -0.174 4.174 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.165 0.835 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.151 0.849 36 H 0.160 0.840 37 H 0.175 0.825 38 H 0.163 0.837 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 24.366 -11.636 0.835 27.015 hybrid contribution -0.521 1.213 0.848 1.569 sum 23.845 -10.423 1.683 26.078 Atomic orbital electron populations 1.70087 1.08433 1.28210 1.52723 1.26099 0.95677 1.03784 0.94057 0.85579 0.79471 0.77816 0.79274 1.19050 1.20994 1.16766 1.21524 0.92349 0.93015 1.50401 0.95400 1.19482 0.93713 0.94921 0.96591 1.21247 0.93909 0.96940 1.00687 1.21970 0.94711 0.88595 1.00680 1.60581 1.09118 1.15379 1.47034 1.20291 0.87886 0.93705 0.96037 0.92411 1.22243 0.96530 1.04013 0.95784 1.23196 0.95330 0.79986 1.02750 1.85947 1.72473 1.31196 1.34815 1.18940 0.92783 0.94996 0.85818 1.20903 1.03334 0.96560 0.97180 1.21307 0.95177 0.99942 0.93811 1.21334 0.98844 0.95336 1.01707 1.21050 0.99005 0.97247 0.94180 1.19976 0.99706 0.99488 0.98272 0.92489 0.96066 0.96132 0.93625 0.93423 0.90676 0.94730 0.83460 0.91180 0.88963 0.90864 0.84928 0.83950 0.82508 0.83672 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 2 C 0.00 0.01 5.47 84.65 0.46 0.47 16 3 Si 0.96 44.42 27.47 68.60 1.88 46.30 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 7 C -0.53 -31.57 9.66 25.60 0.25 -31.33 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 9 C -0.01 -0.43 4.04 29.84 0.12 -0.31 16 10 C -0.09 -3.55 5.46 30.59 0.17 -3.38 16 11 C 0.07 2.11 5.46 86.31 0.47 2.58 16 12 N -0.69 -18.99 6.28 -495.19 -3.11 -22.09 16 13 C 0.13 3.08 2.65 44.22 0.12 3.20 16 14 H 0.06 1.33 7.85 -2.39 -0.02 1.31 16 15 C -0.15 -3.13 5.60 30.75 0.17 -2.95 16 16 C 0.06 1.07 7.03 72.12 0.51 1.58 16 17 O -0.33 -7.43 10.27 -91.74 -0.94 -8.37 16 18 C 0.12 2.80 6.47 22.52 0.15 2.94 16 19 C -0.16 -3.13 9.94 22.42 0.22 -2.91 16 20 C -0.08 -1.38 10.04 22.22 0.22 -1.15 16 21 C -0.15 -2.74 10.04 22.25 0.22 -2.51 16 22 C -0.10 -2.06 8.92 22.30 0.20 -1.86 16 23 C -0.17 -4.09 5.56 -19.74 -0.11 -4.20 16 24 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 25 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 26 H 0.02 0.92 7.57 -2.39 -0.02 0.91 16 27 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 2.19 7.60 -2.39 -0.02 2.18 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.34 9.15 6.23 -89.70 -0.56 8.60 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 1.77 7.74 -2.39 -0.02 1.75 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 39 H 0.13 2.53 6.62 -2.91 -0.02 2.51 16 Total: -1.00 -69.61 315.18 1.72 -67.89 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.42 Total: 16.69 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 3.17 Total: -39.83 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -2.81 Total: -82.68 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.94 Total: -8.37 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -69.61 1.72 -67.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049856499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.702 kcal (2) G-P(sol) polarization free energy of solvation -69.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds