Wall clock time and date at job start Mon Mar 30 2020 06:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00583 * 2 1 4 4 H 1.48509 * 109.46963 * 269.99837 * 3 2 1 5 5 H 1.48500 * 109.47088 * 29.99620 * 3 2 1 6 6 H 1.48499 * 109.47574 * 149.99993 * 3 2 1 7 7 C 1.37885 * 119.99371 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99591 * 185.16956 * 7 2 1 9 9 C 1.50695 * 120.00237 * 5.17003 * 7 2 1 10 10 H 1.08999 * 109.46909 * 335.19155 * 9 7 2 11 11 N 1.46902 * 109.47357 * 215.19344 * 9 7 2 12 12 C 1.46898 * 111.00256 * 84.99831 * 11 9 7 13 13 H 1.09001 * 110.01641 * 325.70349 * 12 11 9 14 14 C 1.54268 * 110.03066 * 87.09202 * 12 11 9 15 15 C 1.54887 * 104.19202 * 142.89569 * 14 12 11 16 16 C 1.54889 * 102.75006 * 322.05626 * 15 14 12 17 17 C 1.53877 * 110.03261 * 204.31164 * 12 11 9 18 18 H 1.08996 * 110.02847 * 0.02562 * 17 12 11 19 19 O 1.42894 * 110.03107 * 121.42866 * 17 12 11 20 20 C 1.50697 * 109.47213 * 95.18923 * 9 7 2 21 21 C 1.38233 * 120.00338 * 254.38086 * 20 9 7 22 22 C 1.38236 * 120.00260 * 180.02562 * 21 20 9 23 23 C 1.38229 * 120.00010 * 0.02562 * 22 21 20 24 24 C 1.38241 * 119.99986 * 0.24421 * 23 22 21 25 25 C 1.38237 * 119.99717 * 74.40194 * 20 9 7 26 26 H 0.97007 * 119.99620 * 359.97438 * 1 2 3 27 27 H 1.00900 * 110.99383 * 321.04366 * 11 9 7 28 28 H 1.08993 * 110.48829 * 261.57390 * 14 12 11 29 29 H 1.08996 * 110.48550 * 24.09030 * 14 12 11 30 30 H 1.09004 * 110.75902 * 80.37332 * 15 14 12 31 31 H 1.08994 * 110.75864 * 203.56101 * 15 14 12 32 32 H 1.09001 * 110.48834 * 156.61992 * 16 15 14 33 33 H 1.08999 * 110.48919 * 279.13208 * 16 15 14 34 34 H 0.96706 * 114.00326 * 180.02562 * 19 17 12 35 35 H 1.08004 * 119.99807 * 0.02562 * 21 20 9 36 36 H 1.08006 * 120.00070 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.00495 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.99821 * 179.73039 * 24 23 22 39 39 H 1.07991 * 120.00310 * 0.02562 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0811 -1.1961 0.0848 9 6 1.2554 -2.4966 -0.1165 10 1 0.2350 -2.3624 0.2425 11 7 1.9279 -3.5226 0.6917 12 6 1.4837 -3.4655 2.0908 13 1 1.2822 -2.4330 2.3764 14 6 0.2148 -4.3228 2.2777 15 6 0.3910 -4.9616 3.6777 16 6 1.9083 -5.2694 3.7245 17 6 2.5609 -4.0662 3.0108 18 1 3.4135 -4.3997 2.4192 19 8 2.9813 -3.0953 3.9712 20 6 1.2273 -2.9320 -1.5589 21 6 0.0624 -2.8144 -2.2938 22 6 0.0364 -3.2143 -3.6168 23 6 1.1751 -3.7324 -4.2047 24 6 2.3385 -3.8553 -3.4682 25 6 2.3662 -3.4496 -2.1470 26 1 -0.4850 0.8401 0.0004 27 1 2.9309 -3.4339 0.6269 28 1 -0.6762 -3.6956 2.2540 29 1 0.1585 -5.0934 1.5089 30 1 0.1156 -4.2561 4.4617 31 1 -0.1945 -5.8771 3.7609 32 1 2.2530 -5.3330 4.7566 33 1 2.1262 -6.1956 3.1927 34 1 3.6608 -3.4138 4.5811 35 1 -0.8274 -2.4099 -1.8344 36 1 -0.8738 -3.1227 -4.1909 37 1 1.1548 -4.0453 -5.2383 38 1 3.2270 -4.2641 -3.9263 39 1 3.2761 -3.5422 -1.5727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323534172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:05 Heat of formation + Delta-G solvation = -36.989382 kcal Electronic energy + Delta-G solvation = -19916.673065 eV Core-core repulsion = 17016.132935 eV Total energy + Delta-G solvation = -2900.540130 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -38.78027 -38.08775 -35.23436 -34.02967 -32.00797 -30.17095 -29.92097 -27.41467 -26.90734 -25.03212 -22.71446 -21.54882 -20.60666 -19.79724 -19.25966 -16.80336 -16.57085 -16.00787 -15.29171 -15.07425 -14.63657 -14.15140 -13.98239 -13.74425 -13.00954 -12.70975 -12.52424 -12.39394 -12.16403 -11.80865 -11.60868 -11.35765 -10.99915 -10.96470 -10.81328 -10.71802 -10.32005 -10.22799 -10.19365 -10.01226 -9.72434 -9.58134 -9.40201 -8.58139 -7.99145 -7.71891 -7.29208 -6.10790 -4.20265 2.34768 2.41038 3.26479 3.32909 3.36112 4.35201 4.51238 4.80939 4.95965 4.99055 5.22018 5.30519 5.47748 5.70166 5.74000 5.79101 5.88942 5.91309 5.99167 6.10539 6.16666 6.21848 6.34671 6.42213 6.47465 6.53674 6.68736 6.73861 6.89785 6.96194 7.06617 7.25145 7.36301 7.50166 7.73451 7.76901 7.99382 8.02515 8.08410 8.18014 8.59973 8.92036 9.46223 10.91555 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013354 B = 0.008447 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.280615 B = 3313.955218 C = 4612.551173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.056 0.944 9 C 0.227 3.773 10 H 0.077 0.923 11 N -0.680 5.680 12 C 0.099 3.901 13 H 0.069 0.931 14 C -0.110 4.110 15 C -0.121 4.121 16 C -0.150 4.150 17 C 0.097 3.903 18 H 0.057 0.943 19 O -0.561 6.561 20 C -0.009 4.009 21 C -0.116 4.116 22 C -0.129 4.129 23 C -0.156 4.156 24 C -0.132 4.132 25 C -0.112 4.112 26 H 0.264 0.736 27 H 0.325 0.675 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.367 0.633 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.448 -9.103 2.608 9.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.074 0.926 9 C 0.120 3.880 10 H 0.095 0.905 11 N -0.310 5.310 12 C -0.012 4.012 13 H 0.087 0.913 14 C -0.148 4.148 15 C -0.159 4.159 16 C -0.188 4.188 17 C 0.038 3.962 18 H 0.074 0.926 19 O -0.366 6.366 20 C -0.010 4.010 21 C -0.135 4.135 22 C -0.147 4.147 23 C -0.174 4.174 24 C -0.150 4.150 25 C -0.131 4.131 26 H 0.074 0.926 27 H 0.142 0.858 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.212 0.788 35 H 0.135 0.865 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.387 -9.101 2.128 9.449 hybrid contribution 1.383 1.558 0.383 2.118 sum 2.770 -7.543 2.511 8.419 Atomic orbital electron populations 1.69880 1.05927 1.27070 1.48928 1.24950 0.94855 0.99302 0.93838 0.86620 0.80078 0.83357 0.78188 1.20524 1.21123 1.19806 1.21596 0.93406 0.91077 1.51450 0.92550 1.18442 0.97602 0.86684 0.85309 0.90524 1.61133 1.10382 1.52196 1.07308 1.21829 0.92138 0.99278 0.87919 0.91294 1.22380 0.97576 0.99092 0.95740 1.22427 0.95239 0.99974 0.98214 1.23011 0.97178 0.98647 0.99967 1.22703 0.96501 0.87617 0.89360 0.92551 1.86655 1.60766 1.41246 1.47889 1.20478 0.91548 0.90586 0.98382 1.21054 0.98655 0.99912 0.93882 1.20965 0.97572 1.00639 0.95512 1.20777 0.93933 1.03844 0.98888 1.20947 0.97298 1.01828 0.94977 1.20817 0.98358 0.99767 0.94120 0.92604 0.85809 0.91901 0.90803 0.91763 0.92130 0.91974 0.91118 0.78758 0.86493 0.87660 0.87860 0.87761 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.56 12.76 55.43 0.71 -23.85 16 2 C 0.08 2.04 5.45 -17.82 -0.10 1.94 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.54 -14.18 7.99 -34.44 -0.28 -14.46 16 8 H 0.06 1.50 7.76 -52.49 -0.41 1.10 16 9 C 0.23 5.44 2.18 -70.02 -0.15 5.28 16 10 H 0.08 2.05 6.64 -51.93 -0.35 1.71 16 11 N -0.68 -14.02 5.59 -101.00 -0.56 -14.58 16 12 C 0.10 1.93 2.84 -66.59 -0.19 1.74 16 13 H 0.07 1.65 7.48 -51.93 -0.39 1.26 16 14 C -0.11 -1.90 6.36 -25.07 -0.16 -2.06 16 15 C -0.12 -1.71 6.91 -24.74 -0.17 -1.88 16 16 C -0.15 -1.98 6.57 -25.02 -0.16 -2.15 16 17 C 0.10 1.56 3.95 -25.56 -0.10 1.46 16 18 H 0.06 0.87 7.48 -51.93 -0.39 0.48 16 19 O -0.56 -9.17 13.22 -35.23 -0.47 -9.64 16 20 C -0.01 -0.20 4.93 -104.63 -0.52 -0.71 16 21 C -0.12 -2.56 9.67 -39.58 -0.38 -2.95 16 22 C -0.13 -2.47 10.05 -39.59 -0.40 -2.86 16 23 C -0.16 -2.80 10.05 -39.58 -0.40 -3.20 16 24 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 25 C -0.11 -2.32 9.27 -39.58 -0.37 -2.68 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.32 6.58 7.17 -39.29 -0.28 6.30 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.37 4.03 9.11 45.56 0.42 4.45 16 35 H 0.12 2.66 8.00 -52.48 -0.42 2.24 16 36 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 37 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 2.13 7.45 -52.49 -0.39 1.74 16 LS Contribution 320.94 15.07 4.84 4.84 Total: -1.00 -28.88 320.94 -9.41 -38.29 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -5.14 Total: 13.96 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -3.77 Total: -25.37 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.14 Total: -38.43 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.47 Total: -9.64 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.88 -9.41 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323534172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.303 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds