Wall clock time and date at job start Mon Mar 30 2020 06:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00583 * 2 1 4 4 H 1.48509 * 109.46963 * 269.99837 * 3 2 1 5 5 H 1.48500 * 109.47088 * 29.99620 * 3 2 1 6 6 H 1.48499 * 109.47574 * 149.99993 * 3 2 1 7 7 C 1.37885 * 119.99371 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99591 * 185.16956 * 7 2 1 9 9 C 1.50695 * 120.00237 * 5.17003 * 7 2 1 10 10 H 1.08999 * 109.46909 * 335.19155 * 9 7 2 11 11 N 1.46902 * 109.47357 * 215.19344 * 9 7 2 12 12 C 1.46898 * 111.00256 * 84.99831 * 11 9 7 13 13 H 1.09001 * 110.01641 * 325.70349 * 12 11 9 14 14 C 1.54268 * 110.03066 * 87.09202 * 12 11 9 15 15 C 1.54887 * 104.19202 * 142.89569 * 14 12 11 16 16 C 1.54889 * 102.75006 * 322.05626 * 15 14 12 17 17 C 1.53877 * 110.03261 * 204.31164 * 12 11 9 18 18 H 1.08996 * 110.02847 * 0.02562 * 17 12 11 19 19 O 1.42894 * 110.03107 * 121.42866 * 17 12 11 20 20 C 1.50697 * 109.47213 * 95.18923 * 9 7 2 21 21 C 1.38233 * 120.00338 * 254.38086 * 20 9 7 22 22 C 1.38236 * 120.00260 * 180.02562 * 21 20 9 23 23 C 1.38229 * 120.00010 * 0.02562 * 22 21 20 24 24 C 1.38241 * 119.99986 * 0.24421 * 23 22 21 25 25 C 1.38237 * 119.99717 * 74.40194 * 20 9 7 26 26 H 0.97007 * 119.99620 * 359.97438 * 1 2 3 27 27 H 1.00900 * 110.99383 * 321.04366 * 11 9 7 28 28 H 1.08993 * 110.48829 * 261.57390 * 14 12 11 29 29 H 1.08996 * 110.48550 * 24.09030 * 14 12 11 30 30 H 1.09004 * 110.75902 * 80.37332 * 15 14 12 31 31 H 1.08994 * 110.75864 * 203.56101 * 15 14 12 32 32 H 1.09001 * 110.48834 * 156.61992 * 16 15 14 33 33 H 1.08999 * 110.48919 * 279.13208 * 16 15 14 34 34 H 0.96706 * 114.00326 * 180.02562 * 19 17 12 35 35 H 1.08004 * 119.99807 * 0.02562 * 21 20 9 36 36 H 1.08006 * 120.00070 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.00495 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.99821 * 179.73039 * 24 23 22 39 39 H 1.07991 * 120.00310 * 0.02562 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0811 -1.1961 0.0848 9 6 1.2554 -2.4966 -0.1165 10 1 0.2350 -2.3624 0.2425 11 7 1.9279 -3.5226 0.6917 12 6 1.4837 -3.4655 2.0908 13 1 1.2822 -2.4330 2.3764 14 6 0.2148 -4.3228 2.2777 15 6 0.3910 -4.9616 3.6777 16 6 1.9083 -5.2694 3.7245 17 6 2.5609 -4.0662 3.0108 18 1 3.4135 -4.3997 2.4192 19 8 2.9813 -3.0953 3.9712 20 6 1.2273 -2.9320 -1.5589 21 6 0.0624 -2.8144 -2.2938 22 6 0.0364 -3.2143 -3.6168 23 6 1.1751 -3.7324 -4.2047 24 6 2.3385 -3.8553 -3.4682 25 6 2.3662 -3.4496 -2.1470 26 1 -0.4850 0.8401 0.0004 27 1 2.9309 -3.4339 0.6269 28 1 -0.6762 -3.6956 2.2540 29 1 0.1585 -5.0934 1.5089 30 1 0.1156 -4.2561 4.4617 31 1 -0.1945 -5.8771 3.7609 32 1 2.2530 -5.3330 4.7566 33 1 2.1262 -6.1956 3.1927 34 1 3.6608 -3.4138 4.5811 35 1 -0.8274 -2.4099 -1.8344 36 1 -0.8738 -3.1227 -4.1909 37 1 1.1548 -4.0453 -5.2383 38 1 3.2270 -4.2641 -3.9263 39 1 3.2761 -3.5422 -1.5727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323534172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:04 Heat of formation + Delta-G solvation = -56.275200 kcal Electronic energy + Delta-G solvation = -19917.509361 eV Core-core repulsion = 17016.132935 eV Total energy + Delta-G solvation = -2901.376425 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.27335 -39.54865 -36.80158 -35.52478 -33.91702 -31.73512 -31.47012 -28.72946 -28.58508 -26.78366 -24.44018 -23.11152 -21.86225 -21.43491 -20.76808 -18.71205 -18.01789 -17.53684 -16.76011 -16.50287 -16.38063 -15.67152 -15.55275 -15.39204 -14.71370 -14.20269 -14.01739 -13.86013 -13.49780 -13.46169 -13.21780 -13.08656 -12.89203 -12.64026 -12.29646 -12.08898 -11.97608 -11.81853 -11.69986 -11.45353 -11.40609 -11.22780 -10.77909 -10.64423 -9.55501 -9.35170 -9.08465 -8.14882 -6.32645 0.77169 0.84256 1.32853 1.33460 1.42424 2.34262 3.03526 3.20917 3.32817 3.66267 3.72588 4.03755 4.14221 4.27778 4.34077 4.45233 4.48336 4.59533 4.67784 4.69546 4.84672 4.91151 4.94556 5.03668 5.09823 5.11562 5.20259 5.22525 5.29786 5.43703 5.48799 5.50740 5.62042 5.82146 5.90680 6.00485 6.19661 6.33087 6.45668 6.82383 6.89665 7.02850 7.35908 8.83872 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013354 B = 0.008447 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.280615 B = 3313.955218 C = 4612.551173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.025 3.975 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.543 4.543 8 H 0.049 0.951 9 C 0.238 3.762 10 H 0.035 0.965 11 N -0.667 5.667 12 C 0.093 3.907 13 H 0.012 0.988 14 C -0.108 4.108 15 C -0.114 4.114 16 C -0.137 4.137 17 C 0.101 3.899 18 H 0.066 0.934 19 O -0.586 6.586 20 C -0.037 4.037 21 C -0.144 4.144 22 C -0.129 4.129 23 C -0.147 4.147 24 C -0.126 4.126 25 C -0.124 4.124 26 H 0.263 0.737 27 H 0.326 0.674 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.391 0.609 35 H 0.091 0.909 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.113 -10.983 1.745 11.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.582 4.582 8 H 0.068 0.932 9 C 0.130 3.870 10 H 0.053 0.947 11 N -0.296 5.296 12 C -0.018 4.018 13 H 0.030 0.970 14 C -0.146 4.146 15 C -0.152 4.152 16 C -0.175 4.175 17 C 0.042 3.958 18 H 0.084 0.916 19 O -0.394 6.394 20 C -0.038 4.038 21 C -0.162 4.162 22 C -0.147 4.147 23 C -0.165 4.165 24 C -0.144 4.144 25 C -0.143 4.143 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.241 0.759 35 H 0.109 0.891 36 H 0.149 0.851 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.072 -10.997 1.280 11.490 hybrid contribution 0.860 2.100 0.611 2.350 sum 3.932 -8.898 1.891 9.910 Atomic orbital electron populations 1.70013 1.07076 1.27424 1.50377 1.25658 0.95598 1.02272 0.94062 0.85746 0.78948 0.79964 0.78196 1.20094 1.20863 1.19452 1.21850 0.93118 0.92507 1.50750 0.93238 1.18110 0.95207 0.86773 0.86932 0.94688 1.61149 1.10149 1.50503 1.07802 1.21906 0.94838 0.96906 0.88120 0.96958 1.22317 0.95527 0.98427 0.98357 1.22413 0.96874 1.00612 0.95268 1.22961 0.95480 0.97596 1.01448 1.22597 0.95748 0.88146 0.89324 0.91603 1.86599 1.62001 1.42230 1.48544 1.20403 0.93038 0.92845 0.97559 1.21033 0.97831 1.01729 0.95654 1.21264 0.99488 0.99681 0.94237 1.21257 0.92794 1.01803 1.00631 1.21369 0.98945 1.00264 0.93807 1.20943 0.97599 1.00127 0.95591 0.92828 0.85682 0.94462 0.90847 0.92293 0.89436 0.89207 0.89329 0.75937 0.89090 0.85081 0.83703 0.84003 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.72 12.76 21.45 0.27 -53.44 16 2 C 0.03 1.42 5.45 84.66 0.46 1.89 16 3 Si 0.95 45.13 29.54 68.60 2.03 47.15 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.54 -30.08 7.99 25.60 0.20 -29.87 16 8 H 0.05 2.74 7.76 -2.91 -0.02 2.71 16 9 C 0.24 12.10 2.18 43.42 0.09 12.19 16 10 H 0.03 2.05 6.64 -2.39 -0.02 2.03 16 11 N -0.67 -28.67 5.59 -473.47 -2.65 -31.31 16 12 C 0.09 3.80 2.84 45.64 0.13 3.93 16 13 H 0.01 0.64 7.48 -2.39 -0.02 0.62 16 14 C -0.11 -3.91 6.36 31.67 0.20 -3.70 16 15 C -0.11 -3.09 6.91 31.88 0.22 -2.87 16 16 C -0.14 -3.25 6.57 31.70 0.21 -3.04 16 17 C 0.10 3.16 3.95 31.36 0.12 3.28 16 18 H 0.07 1.93 7.48 -2.39 -0.02 1.92 16 19 O -0.59 -18.81 13.22 -148.98 -1.97 -20.78 16 20 C -0.04 -1.75 4.93 -19.87 -0.10 -1.85 16 21 C -0.14 -6.54 9.67 22.27 0.22 -6.33 16 22 C -0.13 -4.75 10.05 22.27 0.22 -4.53 16 23 C -0.15 -4.75 10.05 22.27 0.22 -4.52 16 24 C -0.13 -4.24 10.05 22.27 0.22 -4.02 16 25 C -0.12 -5.04 9.27 22.27 0.21 -4.83 16 26 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 27 H 0.33 13.57 7.17 -89.69 -0.64 12.93 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 2.63 8.05 -2.39 -0.02 2.61 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 1.69 8.07 -2.39 -0.02 1.67 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.39 7.87 9.11 -74.05 -0.67 7.19 16 35 H 0.09 4.49 8.00 -2.91 -0.02 4.47 16 36 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 37 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 39 H 0.11 4.37 7.45 -2.92 -0.02 4.34 16 Total: -1.00 -66.72 320.94 0.05 -66.67 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.27 Total: 35.99 kcal Atomic # 6 Polarization: -46.91 SS G_CDS: 2.64 Total: -44.28 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -2.37 Total: -84.76 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -1.97 Total: -20.78 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -66.72 0.05 -66.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323534172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.394 kcal (2) G-P(sol) polarization free energy of solvation -66.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds