Wall clock time and date at job start Mon Mar 30 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 5 5 O 1.21279 * 120.00113 * 120.00322 * 4 2 1 6 6 N 1.34784 * 119.99961 * 300.00090 * 4 2 1 7 7 C 1.46494 * 119.99635 * 180.02562 * 6 4 2 8 8 C 1.50694 * 109.47248 * 90.00174 * 7 6 4 9 9 H 1.07999 * 119.99904 * 359.97438 * 8 7 6 10 10 C 1.37883 * 120.00385 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00419 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99411 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47279 * 90.00270 * 12 10 8 14 14 H 1.48505 * 109.46775 * 209.99777 * 12 10 8 15 15 H 1.48495 * 109.47628 * 329.99523 * 12 10 8 16 16 C 1.46493 * 119.99864 * 359.72839 * 6 4 2 17 17 C 1.53006 * 117.49824 * 188.74500 * 16 6 4 18 18 C 1.53002 * 117.49961 * 120.08857 * 16 6 4 19 19 C 1.52992 * 109.47195 * 240.00068 * 2 1 3 20 20 C 1.53001 * 109.47148 * 64.99898 * 19 2 1 21 21 F 1.39898 * 109.46947 * 184.99855 * 19 2 1 22 22 F 1.39901 * 109.47188 * 305.00019 * 19 2 1 23 23 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 25 25 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 26 26 H 1.09003 * 109.47006 * 210.00121 * 7 6 4 27 27 H 1.09004 * 109.47665 * 329.99813 * 7 6 4 28 28 H 0.96993 * 119.99970 * 180.02562 * 11 10 8 29 29 H 1.09006 * 115.55335 * 334.41513 * 16 6 4 30 30 H 1.08995 * 117.49480 * 0.02562 * 17 16 6 31 31 H 1.08998 * 117.49929 * 145.01353 * 17 16 6 32 32 H 1.09007 * 117.49533 * 214.97531 * 18 16 6 33 33 H 1.08997 * 117.50131 * 359.96874 * 18 16 6 34 34 H 1.08999 * 109.47230 * 59.99896 * 20 19 2 35 35 H 1.09008 * 109.47061 * 179.97438 * 20 19 2 36 36 H 1.08998 * 109.47078 * 299.99354 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6507 8 6 3.5227 -0.3561 4.0607 9 1 3.9588 0.4485 3.4873 10 6 4.1805 -0.8490 5.1678 11 7 5.3391 -0.3396 5.5252 12 14 3.4265 -2.2412 6.1590 13 1 3.8875 -3.5433 5.6138 14 1 3.8467 -2.1223 7.5784 15 1 1.9460 -2.1649 6.0732 16 6 0.8694 0.9446 2.5890 17 6 0.7030 1.5368 3.9900 18 6 -0.4614 0.7950 3.3289 19 6 2.0400 -0.7212 -1.2492 20 6 1.6352 0.0690 -2.4953 21 9 3.4343 -0.8215 -1.1931 22 9 1.4822 -2.0028 -1.3081 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.4775 -0.8151 4.4613 27 1 2.3170 -2.0015 3.4337 28 1 5.8019 -0.6866 6.3038 29 1 0.9032 1.6394 1.7497 30 1 1.2169 1.0378 4.8115 31 1 0.6271 2.6210 4.0723 32 1 -1.3030 1.3916 2.9767 33 1 -0.7142 -0.1923 3.7153 34 1 2.0698 1.0675 -2.4494 35 1 1.9990 -0.4446 -3.3853 36 1 0.5489 0.1471 -2.5390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328513849.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:38 Heat of formation + Delta-G solvation = -104.747254 kcal Electronic energy + Delta-G solvation = -21025.340407 eV Core-core repulsion = 17567.632545 eV Total energy + Delta-G solvation = -3457.707861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.128 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -48.60520 -46.57886 -39.60408 -36.92631 -34.61547 -33.23607 -32.04095 -30.04185 -27.87688 -25.37307 -22.95324 -22.30576 -21.98474 -20.73049 -18.53590 -17.48488 -17.06850 -16.85851 -16.47441 -15.69024 -15.06951 -14.76203 -14.40760 -14.01262 -13.62167 -13.40945 -13.14229 -12.90405 -12.71825 -12.62007 -12.55773 -12.18668 -11.98608 -11.84278 -11.59820 -11.58591 -11.14306 -10.93181 -10.76530 -10.55456 -10.46454 -10.22563 -10.00205 -9.51126 -9.00360 -8.59222 -7.64563 -6.08739 -4.07342 3.16406 3.27648 3.33226 3.36473 3.50067 3.92258 4.14154 4.21306 4.38704 4.47623 4.52108 4.94659 5.05644 5.07421 5.15285 5.17367 5.24735 5.32028 5.42377 5.55986 5.66354 5.71099 5.80741 5.84910 6.00396 6.14370 6.29104 6.55490 6.67933 6.91785 7.26596 7.58942 8.15286 8.46060 8.85800 8.96529 9.50989 11.04608 Molecular weight = 261.13amu Principal moments of inertia in cm(-1) A = 0.022502 B = 0.007262 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.024383 B = 3854.695965 C = 4501.989789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.157 4.157 3 H 0.118 0.882 4 C 0.517 3.483 5 O -0.518 6.518 6 N -0.562 5.562 7 C 0.215 3.785 8 C -0.525 4.525 9 H 0.075 0.925 10 C 0.074 3.926 11 N -0.896 5.896 12 Si 0.873 3.127 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.267 1.267 16 C 0.075 3.925 17 C -0.172 4.172 18 C -0.205 4.205 19 C 0.309 3.691 20 C -0.194 4.194 21 F -0.189 7.189 22 F -0.195 7.195 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.037 0.963 28 H 0.265 0.735 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.658 5.099 -11.482 18.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.179 4.179 3 H 0.136 0.864 4 C 0.302 3.698 5 O -0.394 6.394 6 N -0.292 5.292 7 C 0.095 3.905 8 C -0.563 4.563 9 H 0.094 0.906 10 C -0.129 4.129 11 N -0.534 5.534 12 Si 0.699 3.301 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.191 1.191 16 C -0.031 4.031 17 C -0.210 4.210 18 C -0.244 4.244 19 C 0.272 3.728 20 C -0.252 4.252 21 F -0.170 7.170 22 F -0.176 7.176 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.084 4.481 -11.386 17.914 hybrid contribution -0.077 -0.694 0.691 0.982 sum -13.161 3.787 -10.696 17.377 Atomic orbital electron populations 1.22052 0.91088 1.04141 1.03995 1.22451 0.99782 1.02219 0.93483 0.86410 1.19797 0.80952 0.85095 0.83938 1.90757 1.36680 1.26149 1.85787 1.47332 1.48684 1.26609 1.06597 1.19691 0.95391 0.93515 0.81924 1.21275 1.02892 1.20214 1.11944 0.90643 1.24835 0.94632 0.96340 0.97080 1.69887 1.14695 1.42268 1.26547 0.86909 0.79987 0.83541 0.79621 1.19868 1.20992 1.19136 1.21556 0.93781 0.90660 0.97139 1.23383 1.00704 0.99896 0.97007 1.23480 0.92331 1.02611 1.05940 1.20614 0.75559 0.80526 0.96113 1.22827 1.04328 1.01659 0.96374 1.93062 1.30120 1.96390 1.97393 1.92997 1.84969 1.42273 1.97354 0.91240 0.89441 0.91261 0.95025 0.94507 0.92550 0.86208 0.86519 0.88540 0.88636 0.88763 0.89299 0.89976 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.40 37.16 0.31 -1.40 16 2 C -0.16 -2.31 1.62 -91.77 -0.15 -2.46 16 3 H 0.12 1.46 7.56 -51.93 -0.39 1.07 16 4 C 0.52 10.84 6.85 -10.98 -0.08 10.76 16 5 O -0.52 -13.43 14.40 5.56 0.08 -13.35 16 6 N -0.56 -11.61 2.79 -167.47 -0.47 -12.08 16 7 C 0.21 5.28 3.53 -5.20 -0.02 5.26 16 8 C -0.52 -15.07 9.73 -34.44 -0.34 -15.41 16 9 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 10 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 11 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 12 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 13 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 16 C 0.07 1.15 4.33 -67.93 -0.29 0.86 16 17 C -0.17 -2.63 9.72 -26.69 -0.26 -2.89 16 18 C -0.20 -2.66 9.30 -26.69 -0.25 -2.91 16 19 C 0.31 4.70 1.50 -26.73 -0.04 4.66 16 20 C -0.19 -1.85 9.14 37.16 0.34 -1.51 16 21 F -0.19 -3.61 15.82 2.25 0.04 -3.58 16 22 F -0.19 -3.38 15.75 2.25 0.04 -3.35 16 23 H 0.07 0.85 7.69 -51.93 -0.40 0.45 16 24 H 0.09 0.91 4.43 -51.93 -0.23 0.68 16 25 H 0.07 0.53 6.56 -51.93 -0.34 0.19 16 26 H 0.03 0.74 5.41 -51.93 -0.28 0.46 16 27 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.12 1.49 6.18 -51.93 -0.32 1.17 16 30 H 0.12 2.18 6.28 -51.93 -0.33 1.85 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.10 0.94 8.14 -51.92 -0.42 0.52 16 33 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 36 H 0.09 0.65 6.56 -51.93 -0.34 0.31 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -35.42 295.12 -5.32 -40.74 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -4.69 Total: 0.06 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -0.87 Total: -3.00 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.31 Total: -39.01 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 0.07 Total: -6.93 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -35.42 -5.32 -40.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328513849.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.006 kcal (2) G-P(sol) polarization free energy of solvation -35.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds