Wall clock time and date at job start Mon Mar 30 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 5 5 O 1.21279 * 120.00113 * 120.00322 * 4 2 1 6 6 N 1.34784 * 119.99961 * 300.00090 * 4 2 1 7 7 C 1.46494 * 119.99635 * 180.02562 * 6 4 2 8 8 C 1.50694 * 109.47248 * 90.00174 * 7 6 4 9 9 H 1.07999 * 119.99904 * 359.97438 * 8 7 6 10 10 C 1.37883 * 120.00385 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00419 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99411 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47279 * 90.00270 * 12 10 8 14 14 H 1.48505 * 109.46775 * 209.99777 * 12 10 8 15 15 H 1.48495 * 109.47628 * 329.99523 * 12 10 8 16 16 C 1.46493 * 119.99864 * 359.72839 * 6 4 2 17 17 C 1.53006 * 117.49824 * 188.74500 * 16 6 4 18 18 C 1.53002 * 117.49961 * 120.08857 * 16 6 4 19 19 C 1.52992 * 109.47195 * 240.00068 * 2 1 3 20 20 C 1.53001 * 109.47148 * 64.99898 * 19 2 1 21 21 F 1.39898 * 109.46947 * 184.99855 * 19 2 1 22 22 F 1.39901 * 109.47188 * 305.00019 * 19 2 1 23 23 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 25 25 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 26 26 H 1.09003 * 109.47006 * 210.00121 * 7 6 4 27 27 H 1.09004 * 109.47665 * 329.99813 * 7 6 4 28 28 H 0.96993 * 119.99970 * 180.02562 * 11 10 8 29 29 H 1.09006 * 115.55335 * 334.41513 * 16 6 4 30 30 H 1.08995 * 117.49480 * 0.02562 * 17 16 6 31 31 H 1.08998 * 117.49929 * 145.01353 * 17 16 6 32 32 H 1.09007 * 117.49533 * 214.97531 * 18 16 6 33 33 H 1.08997 * 117.50131 * 359.96874 * 18 16 6 34 34 H 1.08999 * 109.47230 * 59.99896 * 20 19 2 35 35 H 1.09008 * 109.47061 * 179.97438 * 20 19 2 36 36 H 1.08998 * 109.47078 * 299.99354 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6507 8 6 3.5227 -0.3561 4.0607 9 1 3.9588 0.4485 3.4873 10 6 4.1805 -0.8490 5.1678 11 7 5.3391 -0.3396 5.5252 12 14 3.4265 -2.2412 6.1590 13 1 3.8875 -3.5433 5.6138 14 1 3.8467 -2.1223 7.5784 15 1 1.9460 -2.1649 6.0732 16 6 0.8694 0.9446 2.5890 17 6 0.7030 1.5368 3.9900 18 6 -0.4614 0.7950 3.3289 19 6 2.0400 -0.7212 -1.2492 20 6 1.6352 0.0690 -2.4953 21 9 3.4343 -0.8215 -1.1931 22 9 1.4822 -2.0028 -1.3081 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.4775 -0.8151 4.4613 27 1 2.3170 -2.0015 3.4337 28 1 5.8019 -0.6866 6.3038 29 1 0.9032 1.6394 1.7497 30 1 1.2169 1.0378 4.8115 31 1 0.6271 2.6210 4.0723 32 1 -1.3030 1.3916 2.9767 33 1 -0.7142 -0.1923 3.7153 34 1 2.0698 1.0675 -2.4494 35 1 1.9990 -0.4446 -3.3853 36 1 0.5489 0.1471 -2.5390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328513849.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:35 Heat of formation + Delta-G solvation = -129.736000 kcal Electronic energy + Delta-G solvation = -21026.424000 eV Core-core repulsion = 17567.632545 eV Total energy + Delta-G solvation = -3458.791454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.128 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -49.85667 -47.87560 -41.12651 -38.35914 -35.84778 -35.12491 -33.88308 -31.18705 -29.62562 -26.42843 -24.83684 -23.59197 -23.12474 -22.03112 -20.01210 -19.17832 -18.71366 -18.32845 -17.80154 -16.91867 -16.74904 -16.39331 -15.77099 -15.59214 -15.00201 -14.75708 -14.70137 -14.26820 -14.06023 -13.78891 -13.68475 -13.52139 -13.47797 -13.05224 -12.83018 -12.79331 -12.61338 -12.52521 -12.30422 -12.17562 -11.88404 -11.75144 -11.47772 -11.36928 -10.87285 -10.58890 -9.27602 -8.37555 -6.41733 1.25725 1.30834 1.37978 1.63041 2.05328 2.25602 2.80176 2.95384 3.03188 3.15036 3.33064 3.48153 3.86429 3.91749 4.03321 4.13306 4.17593 4.24132 4.61346 4.66740 4.76772 4.81303 4.83342 4.86645 4.88392 4.95260 5.08019 5.21343 5.31184 5.38838 5.40858 5.54196 6.19502 6.57931 6.60590 7.16347 7.31161 8.79470 Molecular weight = 261.13amu Principal moments of inertia in cm(-1) A = 0.022502 B = 0.007262 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.024383 B = 3854.695965 C = 4501.989789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 H 0.146 0.854 4 C 0.499 3.501 5 O -0.586 6.586 6 N -0.570 5.570 7 C 0.227 3.773 8 C -0.527 4.527 9 H 0.029 0.971 10 C 0.014 3.986 11 N -0.942 5.942 12 Si 0.941 3.059 13 H -0.280 1.280 14 H -0.270 1.270 15 H -0.240 1.240 16 C 0.050 3.950 17 C -0.190 4.190 18 C -0.168 4.168 19 C 0.286 3.714 20 C -0.182 4.182 21 F -0.222 7.222 22 F -0.214 7.214 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.116 0.884 26 H 0.050 0.950 27 H 0.010 0.990 28 H 0.269 0.731 29 H 0.159 0.841 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.231 6.607 -12.463 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 H 0.164 0.836 4 C 0.288 3.712 5 O -0.466 6.466 6 N -0.299 5.299 7 C 0.104 3.896 8 C -0.566 4.566 9 H 0.047 0.953 10 C -0.185 4.185 11 N -0.582 5.582 12 Si 0.764 3.236 13 H -0.206 1.206 14 H -0.195 1.195 15 H -0.163 1.163 16 C -0.054 4.054 17 C -0.228 4.228 18 C -0.206 4.206 19 C 0.249 3.751 20 C -0.239 4.239 21 F -0.203 7.203 22 F -0.195 7.195 23 H 0.071 0.929 24 H 0.117 0.883 25 H 0.134 0.866 26 H 0.068 0.932 27 H 0.028 0.972 28 H 0.078 0.922 29 H 0.176 0.824 30 H 0.093 0.907 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.712 6.040 -12.373 21.653 hybrid contribution 1.090 -1.104 0.983 1.836 sum -15.621 4.937 -11.390 19.953 Atomic orbital electron populations 1.22123 0.87558 1.04004 1.06879 1.22566 1.02477 1.02276 0.89552 0.83603 1.21056 0.79831 0.84635 0.85687 1.90710 1.39668 1.29269 1.86932 1.47406 1.49069 1.27959 1.05434 1.19260 0.93819 0.92182 0.84291 1.21438 1.04727 1.19011 1.11375 0.95275 1.25780 0.95059 0.99172 0.98448 1.70033 1.16447 1.44214 1.27554 0.85821 0.80619 0.79028 0.78154 1.20582 1.19505 1.16330 1.22148 0.94929 0.89580 0.98724 1.23389 1.02386 1.01516 0.95468 1.23560 0.92157 1.02146 1.02767 1.21535 0.73926 0.80445 0.99154 1.22857 1.06462 1.01510 0.93023 1.92994 1.33046 1.96548 1.97701 1.92952 1.85021 1.43978 1.97570 0.92921 0.88281 0.86556 0.93213 0.97183 0.92244 0.82378 0.90708 0.85726 0.83774 0.90051 0.87081 0.89606 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.40 71.98 0.60 -2.02 16 2 C -0.15 -4.02 1.62 -11.54 -0.02 -4.04 16 3 H 0.15 3.12 7.56 -2.39 -0.02 3.10 16 4 C 0.50 21.22 6.85 87.66 0.60 21.82 16 5 O -0.59 -31.96 14.40 -3.03 -0.04 -32.01 16 6 N -0.57 -23.56 2.79 -802.14 -2.24 -25.80 16 7 C 0.23 11.42 3.53 85.63 0.30 11.72 16 8 C -0.53 -31.72 9.73 25.60 0.25 -31.47 16 9 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 10 C 0.01 0.82 5.47 84.66 0.46 1.29 16 11 N -0.94 -60.64 13.96 21.45 0.30 -60.35 16 12 Si 0.94 45.78 27.47 68.60 1.88 47.66 16 13 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 14 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 15 H -0.24 -10.53 6.54 99.48 0.65 -9.88 16 16 C 0.05 1.41 4.33 45.00 0.19 1.60 16 17 C -0.19 -5.41 9.72 30.62 0.30 -5.11 16 18 C -0.17 -3.68 9.30 30.62 0.28 -3.39 16 19 C 0.29 8.36 1.50 30.59 0.05 8.41 16 20 C -0.18 -2.79 9.14 71.98 0.66 -2.13 16 21 F -0.22 -8.72 15.82 44.97 0.71 -8.01 16 22 F -0.21 -7.43 15.75 44.97 0.71 -6.72 16 23 H 0.05 1.14 7.69 -2.38 -0.02 1.12 16 24 H 0.10 1.52 4.43 -2.39 -0.01 1.51 16 25 H 0.12 1.00 6.56 -2.39 -0.02 0.98 16 26 H 0.05 2.32 5.41 -2.39 -0.01 2.30 16 27 H 0.01 0.56 6.85 -2.38 -0.02 0.55 16 28 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 29 H 0.16 3.20 6.18 -2.38 -0.01 3.19 16 30 H 0.07 2.79 6.28 -2.39 -0.02 2.78 16 31 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.08 2.05 8.13 -2.39 -0.02 2.03 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.12 1.08 6.56 -2.39 -0.02 1.07 16 Total: -1.00 -86.46 295.12 6.04 -80.43 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.04 Total: 8.13 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 3.68 Total: -3.32 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -1.94 Total: -86.15 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.04 Total: -32.01 kcal Atomic # 9 Polarization: -16.15 SS G_CDS: 1.42 Total: -14.73 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.66 kcal Total: -86.46 6.04 -80.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328513849.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.308 kcal (2) G-P(sol) polarization free energy of solvation -86.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds