Wall clock time and date at job start Mon Mar 30 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99841 * 2 1 4 4 C 1.52990 * 109.47510 * 66.04877 * 3 2 1 5 5 O 1.42900 * 109.47338 * 64.99937 * 4 3 2 6 6 C 1.35669 * 117.00076 * 180.02562 * 5 4 3 7 7 C 1.39316 * 119.82140 * 359.72788 * 6 5 4 8 8 C 1.36433 * 120.18708 * 179.71731 * 7 6 5 9 9 C 1.40837 * 119.81099 * 0.55330 * 8 7 6 10 10 C 1.41217 * 120.17878 * 179.69852 * 9 8 7 11 11 H 1.07998 * 119.99659 * 204.57030 * 10 9 8 12 12 C 1.39886 * 119.99987 * 24.56851 * 10 9 8 13 13 N 1.30878 * 120.00347 * 17.91925 * 12 10 9 14 14 Si 1.86804 * 119.99872 * 197.92492 * 12 10 9 15 15 H 1.48500 * 109.47284 * 59.99798 * 14 12 10 16 16 H 1.48498 * 109.47072 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46846 * 299.99823 * 14 12 10 18 18 C 1.40839 * 119.64019 * 359.72174 * 9 8 7 19 19 C 1.36434 * 119.81210 * 359.97438 * 18 9 8 20 20 C 1.46904 * 110.99910 * 236.04894 * 2 1 3 21 21 C 1.52998 * 117.49802 * 7.69564 * 20 2 1 22 22 C 1.53000 * 117.49410 * 299.03757 * 20 2 1 23 23 H 1.08994 * 109.47043 * 59.99788 * 1 2 3 24 24 H 1.09001 * 109.46905 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46650 * 300.00036 * 1 2 3 26 26 H 1.09007 * 109.47275 * 306.04699 * 3 2 1 27 27 H 1.09003 * 109.47238 * 186.05143 * 3 2 1 28 28 H 1.09006 * 109.46929 * 305.00112 * 4 3 2 29 29 H 1.09005 * 109.47412 * 185.00333 * 4 3 2 30 30 H 1.08000 * 119.90384 * 359.97239 * 7 6 5 31 31 H 1.08003 * 120.09700 * 180.27399 * 8 7 6 32 32 H 0.96997 * 120.00116 * 179.97438 * 13 12 10 33 33 H 1.08001 * 120.08912 * 179.97438 * 18 9 8 34 34 H 1.07997 * 119.91083 * 179.97438 * 19 18 9 35 35 H 1.08999 * 115.55076 * 153.37008 * 20 2 1 36 36 H 1.09004 * 117.49976 * 0.02562 * 21 20 2 37 37 H 1.08997 * 117.50022 * 145.02455 * 21 20 2 38 38 H 1.08994 * 117.49579 * 214.98093 * 22 20 2 39 39 H 1.09004 * 117.49959 * 359.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6316 2.0575 1.3182 5 8 2.2957 1.3977 2.3978 6 6 2.0780 1.8852 3.6450 7 6 1.2419 2.9854 3.8226 8 6 1.0132 3.4783 5.0740 9 6 1.6342 2.8788 6.1869 10 6 1.4079 3.3866 7.4851 11 1 2.1384 3.2234 8.2636 12 6 0.2376 4.1010 7.7625 13 7 -0.7916 4.0085 6.9593 14 14 0.1438 5.1871 9.2795 15 1 1.1940 6.2342 9.2043 16 1 -1.1927 5.8310 9.3454 17 1 0.3557 4.3598 10.4944 18 6 2.4825 1.7706 5.9981 19 6 2.6958 1.2861 4.7406 20 6 1.9955 -0.7659 -1.1377 21 6 0.9930 -1.2527 -2.1860 22 6 1.6336 -2.2504 -1.2178 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.5611 1.9274 -0.8309 27 1 3.0797 1.3445 -0.1083 28 1 0.5532 2.0058 1.4691 29 1 1.9439 3.1012 1.2830 30 1 0.7703 3.4469 2.9676 31 1 0.3612 4.3285 5.2105 32 1 -1.6031 4.5036 7.1519 33 1 2.9628 1.3056 6.8463 34 1 3.3463 0.4366 4.5939 35 1 2.9846 -0.4695 -1.4866 36 1 -0.0571 -1.0042 -2.0318 37 1 1.3228 -1.2768 -3.2246 38 1 2.3845 -2.9304 -1.6198 39 1 1.0053 -2.6587 -0.4262 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034674468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:49 Heat of formation + Delta-G solvation = 17.295011 kcal Electronic energy + Delta-G solvation = -18917.737786 eV Core-core repulsion = 16019.551604 eV Total energy + Delta-G solvation = -2898.186182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.21445 -38.39666 -36.35940 -34.18601 -33.18515 -29.70645 -29.48765 -28.47236 -26.50474 -24.69135 -22.64228 -22.28018 -20.90440 -20.36926 -19.78963 -17.30718 -17.01856 -16.93380 -15.58126 -15.10139 -14.93428 -14.45147 -14.16843 -13.88678 -13.53284 -12.96032 -12.63385 -12.36943 -12.26758 -12.03550 -11.80276 -11.75171 -11.49195 -11.24530 -11.10645 -10.99064 -10.98282 -10.69470 -10.55235 -10.32693 -9.79797 -9.73492 -9.29768 -8.94756 -8.12046 -7.58950 -6.93263 -6.67592 -4.19457 2.83358 3.02622 3.09847 3.12943 3.27262 3.56801 3.92140 3.98504 4.18695 4.67019 4.72408 4.82202 4.90664 5.12341 5.24750 5.34113 5.46774 5.50527 5.60040 5.68683 5.70314 5.73445 5.84409 5.96342 5.99382 6.06788 6.17858 6.36010 6.78753 6.95694 7.01714 7.05900 7.12298 7.34288 7.48887 7.62496 7.97672 8.05723 8.22336 8.53098 8.72678 8.95559 9.06379 10.27028 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.045640 B = 0.003558 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.345708 B = 7868.133046 C = 8073.722073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.499 5.499 3 C 0.060 3.940 4 C 0.071 3.929 5 O -0.313 6.313 6 C -0.004 4.004 7 C -0.177 4.177 8 C -0.134 4.134 9 C 0.086 3.914 10 C -0.465 4.465 11 H 0.076 0.924 12 C 0.075 3.925 13 N -0.802 5.802 14 Si 0.906 3.094 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.266 1.266 18 C -0.195 4.195 19 C -0.114 4.114 20 C 0.024 3.976 21 C -0.224 4.224 22 C -0.171 4.171 23 H 0.028 0.972 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.279 0.721 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.183 -4.424 -13.928 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.221 5.221 3 C -0.067 4.067 4 C -0.006 4.006 5 O -0.229 6.229 6 C -0.047 4.047 7 C -0.196 4.196 8 C -0.153 4.153 9 C 0.083 3.917 10 C -0.495 4.495 11 H 0.094 0.906 12 C -0.141 4.141 13 N -0.428 5.428 14 Si 0.731 3.269 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.191 1.191 18 C -0.215 4.215 19 C -0.133 4.133 20 C -0.085 4.085 21 C -0.263 4.263 22 C -0.209 4.209 23 H 0.047 0.953 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.211 -4.708 -13.537 14.384 hybrid contribution -0.721 1.041 -0.085 1.269 sum 0.490 -3.667 -13.622 14.116 Atomic orbital electron populations 1.22566 0.87434 1.02151 1.00935 1.61759 1.07693 1.13431 1.39181 1.22197 1.01160 0.87999 0.95360 1.22478 0.96874 0.95141 0.86084 1.85908 1.67994 1.56038 1.12910 1.18624 1.04004 0.98735 0.83346 1.20608 1.02411 0.98785 0.97825 1.20929 1.02700 1.01104 0.90583 1.17576 0.90772 0.89931 0.93377 1.19424 1.03587 1.30287 0.96235 0.90609 1.25854 0.94817 0.95503 0.97942 1.69835 1.02416 1.34067 1.36529 0.86404 0.78030 0.80633 0.81821 1.18956 1.20483 1.19092 1.20598 1.06769 0.99471 0.94644 1.19610 1.02065 1.00570 0.91075 1.22679 0.98185 0.95648 0.92010 1.23580 0.99900 1.06531 0.96301 1.23044 1.03652 0.92473 1.01736 0.95346 0.91313 0.90580 0.93278 0.89784 0.93029 0.92797 0.88973 0.86230 0.91046 0.88324 0.88541 0.86571 0.88320 0.89092 0.88624 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 7.96 60.07 0.48 0.69 16 2 N -0.50 -6.78 4.92 -234.88 -1.16 -7.93 16 3 C 0.06 0.79 5.32 -3.83 -0.02 0.77 16 4 C 0.07 1.16 4.79 37.15 0.18 1.34 16 5 O -0.31 -6.56 10.07 -18.71 -0.19 -6.75 16 6 C 0.00 -0.09 6.71 -38.78 -0.26 -0.35 16 7 C -0.18 -4.24 8.96 -39.83 -0.36 -4.60 16 8 C -0.13 -3.53 8.64 -39.25 -0.34 -3.87 16 9 C 0.09 2.33 5.57 -106.80 -0.60 1.73 16 10 C -0.47 -12.55 9.04 -37.83 -0.34 -12.89 16 11 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 12 C 0.08 1.92 5.13 -17.34 -0.09 1.83 16 13 N -0.80 -21.06 10.96 55.54 0.61 -20.45 16 14 Si 0.91 18.95 29.60 -169.99 -5.03 13.92 16 15 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 16 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 18 C -0.20 -4.93 9.74 -39.25 -0.38 -5.31 16 19 C -0.11 -2.74 9.92 -39.83 -0.40 -3.14 16 20 C 0.02 0.27 6.11 -67.71 -0.41 -0.14 16 21 C -0.22 -2.09 9.51 -26.69 -0.25 -2.35 16 22 C -0.17 -1.73 9.99 -26.69 -0.27 -2.00 16 23 H 0.03 0.30 7.23 -51.93 -0.38 -0.07 16 24 H 0.07 0.79 6.63 -51.93 -0.34 0.45 16 25 H 0.08 1.05 6.37 -51.93 -0.33 0.72 16 26 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 27 H 0.08 1.07 7.96 -51.93 -0.41 0.66 16 28 H 0.05 0.85 5.85 -51.93 -0.30 0.55 16 29 H 0.05 0.84 7.64 -51.93 -0.40 0.45 16 30 H 0.09 1.96 6.27 -52.49 -0.33 1.63 16 31 H 0.12 3.24 6.16 -52.48 -0.32 2.91 16 32 H 0.28 6.68 8.30 -40.82 -0.34 6.35 16 33 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 34 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.12 1.18 7.93 -51.93 -0.41 0.76 16 36 H 0.10 0.92 5.90 -51.93 -0.31 0.62 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.10 1.06 7.56 -51.93 -0.39 0.66 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -28.90 316.48 -9.64 -38.55 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.59 Total: 6.17 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: -3.06 Total: -28.28 kcal Atomic # 7 Polarization: -27.83 SS G_CDS: -0.55 Total: -28.38 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.19 Total: -6.75 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.90 -9.64 -38.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.845 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds