Wall clock time and date at job start Mon Mar 30 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99841 * 2 1 4 4 C 1.52990 * 109.47510 * 66.04877 * 3 2 1 5 5 O 1.42900 * 109.47338 * 64.99937 * 4 3 2 6 6 C 1.35669 * 117.00076 * 180.02562 * 5 4 3 7 7 C 1.39316 * 119.82140 * 359.72788 * 6 5 4 8 8 C 1.36433 * 120.18708 * 179.71731 * 7 6 5 9 9 C 1.40837 * 119.81099 * 0.55330 * 8 7 6 10 10 C 1.41217 * 120.17878 * 179.69852 * 9 8 7 11 11 H 1.07998 * 119.99659 * 204.57030 * 10 9 8 12 12 C 1.39886 * 119.99987 * 24.56851 * 10 9 8 13 13 N 1.30878 * 120.00347 * 17.91925 * 12 10 9 14 14 Si 1.86804 * 119.99872 * 197.92492 * 12 10 9 15 15 H 1.48500 * 109.47284 * 59.99798 * 14 12 10 16 16 H 1.48498 * 109.47072 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46846 * 299.99823 * 14 12 10 18 18 C 1.40839 * 119.64019 * 359.72174 * 9 8 7 19 19 C 1.36434 * 119.81210 * 359.97438 * 18 9 8 20 20 C 1.46904 * 110.99910 * 236.04894 * 2 1 3 21 21 C 1.52998 * 117.49802 * 7.69564 * 20 2 1 22 22 C 1.53000 * 117.49410 * 299.03757 * 20 2 1 23 23 H 1.08994 * 109.47043 * 59.99788 * 1 2 3 24 24 H 1.09001 * 109.46905 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46650 * 300.00036 * 1 2 3 26 26 H 1.09007 * 109.47275 * 306.04699 * 3 2 1 27 27 H 1.09003 * 109.47238 * 186.05143 * 3 2 1 28 28 H 1.09006 * 109.46929 * 305.00112 * 4 3 2 29 29 H 1.09005 * 109.47412 * 185.00333 * 4 3 2 30 30 H 1.08000 * 119.90384 * 359.97239 * 7 6 5 31 31 H 1.08003 * 120.09700 * 180.27399 * 8 7 6 32 32 H 0.96997 * 120.00116 * 179.97438 * 13 12 10 33 33 H 1.08001 * 120.08912 * 179.97438 * 18 9 8 34 34 H 1.07997 * 119.91083 * 179.97438 * 19 18 9 35 35 H 1.08999 * 115.55076 * 153.37008 * 20 2 1 36 36 H 1.09004 * 117.49976 * 0.02562 * 21 20 2 37 37 H 1.08997 * 117.50022 * 145.02455 * 21 20 2 38 38 H 1.08994 * 117.49579 * 214.98093 * 22 20 2 39 39 H 1.09004 * 117.49959 * 359.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6316 2.0575 1.3182 5 8 2.2957 1.3977 2.3978 6 6 2.0780 1.8852 3.6450 7 6 1.2419 2.9854 3.8226 8 6 1.0132 3.4783 5.0740 9 6 1.6342 2.8788 6.1869 10 6 1.4079 3.3866 7.4851 11 1 2.1384 3.2234 8.2636 12 6 0.2376 4.1010 7.7625 13 7 -0.7916 4.0085 6.9593 14 14 0.1438 5.1871 9.2795 15 1 1.1940 6.2342 9.2043 16 1 -1.1927 5.8310 9.3454 17 1 0.3557 4.3598 10.4944 18 6 2.4825 1.7706 5.9981 19 6 2.6958 1.2861 4.7406 20 6 1.9955 -0.7659 -1.1377 21 6 0.9930 -1.2527 -2.1860 22 6 1.6336 -2.2504 -1.2178 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.5611 1.9274 -0.8309 27 1 3.0797 1.3445 -0.1083 28 1 0.5532 2.0058 1.4691 29 1 1.9439 3.1012 1.2830 30 1 0.7703 3.4469 2.9676 31 1 0.3612 4.3285 5.2105 32 1 -1.6031 4.5036 7.1519 33 1 2.9628 1.3056 6.8463 34 1 3.3463 0.4366 4.5939 35 1 2.9846 -0.4695 -1.4866 36 1 -0.0571 -1.0042 -2.0318 37 1 1.3228 -1.2768 -3.2246 38 1 2.3845 -2.9304 -1.6198 39 1 1.0053 -2.6587 -0.4262 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034674468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:49 Heat of formation + Delta-G solvation = 1.110772 kcal Electronic energy + Delta-G solvation = -18918.439587 eV Core-core repulsion = 16019.551604 eV Total energy + Delta-G solvation = -2898.887983 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60548 -39.68253 -38.08741 -35.45576 -34.83898 -31.53823 -31.22899 -29.91572 -27.57167 -26.57694 -23.86210 -23.21264 -22.77440 -21.81691 -20.90253 -19.25047 -18.65093 -17.97092 -17.15503 -16.44771 -16.21578 -15.85159 -15.66148 -15.42240 -14.73824 -14.60449 -14.16161 -13.96367 -13.67317 -13.54489 -13.20950 -13.02733 -12.75206 -12.73323 -12.60966 -12.28512 -12.22207 -12.20486 -11.69463 -11.61486 -11.44563 -11.24803 -11.11008 -10.82679 -9.54369 -9.03768 -8.86436 -8.57896 -6.20154 0.96947 1.07133 1.39855 1.50770 1.55641 2.23788 2.65422 2.74027 2.74914 3.09211 3.72630 3.89054 4.02979 4.05037 4.14246 4.17010 4.26650 4.35145 4.40687 4.47022 4.50327 4.63180 4.77114 4.83773 4.90676 4.94098 4.96424 5.06137 5.12085 5.17131 5.25948 5.39354 5.55266 5.69082 6.00510 6.05717 6.08940 6.14439 6.27175 6.59424 6.84508 6.97172 7.15297 8.38628 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.045640 B = 0.003558 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.345708 B = 7868.133046 C = 8073.722073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.526 5.526 3 C 0.068 3.932 4 C 0.062 3.938 5 O -0.320 6.320 6 C 0.005 3.995 7 C -0.179 4.179 8 C -0.154 4.154 9 C 0.053 3.947 10 C -0.502 4.502 11 H 0.075 0.925 12 C 0.034 3.966 13 N -0.833 5.833 14 Si 0.982 3.018 15 H -0.261 1.261 16 H -0.269 1.269 17 H -0.260 1.260 18 C -0.204 4.204 19 C -0.124 4.124 20 C 0.009 3.991 21 C -0.207 4.207 22 C -0.176 4.176 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.286 0.714 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 -4.407 -15.220 15.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.248 5.248 3 C -0.059 4.059 4 C -0.014 4.014 5 O -0.236 6.236 6 C -0.039 4.039 7 C -0.198 4.198 8 C -0.174 4.174 9 C 0.051 3.949 10 C -0.532 4.532 11 H 0.093 0.907 12 C -0.180 4.180 13 N -0.460 5.460 14 Si 0.803 3.197 15 H -0.186 1.186 16 H -0.193 1.193 17 H -0.184 1.184 18 C -0.224 4.224 19 C -0.143 4.143 20 C -0.100 4.100 21 C -0.246 4.246 22 C -0.214 4.214 23 H 0.064 0.936 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.338 -4.708 -14.858 15.644 hybrid contribution -0.746 0.938 0.153 1.208 sum 0.592 -3.770 -14.705 15.192 Atomic orbital electron populations 1.22512 0.87199 1.02337 1.00725 1.61709 1.08212 1.13786 1.41116 1.22148 1.01642 0.88219 0.93935 1.22829 0.96510 0.95991 0.86045 1.85912 1.68474 1.56581 1.12625 1.18747 1.02691 0.97888 0.84621 1.20804 1.02324 0.98889 0.97748 1.20909 1.03491 1.01423 0.91576 1.17933 0.91943 0.90999 0.94025 1.19689 1.04658 1.32398 0.96468 0.90660 1.26716 0.93845 0.96149 1.01265 1.69889 1.03014 1.34703 1.38378 0.85263 0.78410 0.78451 0.77613 1.18575 1.19294 1.18444 1.20794 1.06635 0.99217 0.95730 1.19880 1.02356 1.01144 0.90882 1.22771 0.99144 0.95879 0.92200 1.23598 0.99433 1.04828 0.96734 1.23104 1.04042 0.92363 1.01888 0.93570 0.90987 0.92650 0.90550 0.89326 0.93321 0.91876 0.86645 0.87606 0.90313 0.87363 0.86530 0.85582 0.88369 0.87336 0.87193 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 7.96 127.69 1.02 1.48 16 2 N -0.53 -13.36 4.92 -897.03 -4.41 -17.77 16 3 C 0.07 1.63 5.32 86.30 0.46 2.09 16 4 C 0.06 1.94 4.79 71.98 0.34 2.29 16 5 O -0.32 -13.07 10.07 -89.86 -0.90 -13.98 16 6 C 0.00 0.22 6.71 22.79 0.15 0.37 16 7 C -0.18 -8.58 8.96 22.11 0.20 -8.38 16 8 C -0.15 -8.36 8.64 22.48 0.19 -8.16 16 9 C 0.05 2.96 5.57 -21.28 -0.12 2.84 16 10 C -0.50 -27.78 9.04 23.40 0.21 -27.57 16 11 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 12 C 0.03 1.74 5.13 85.23 0.44 2.18 16 13 N -0.83 -44.49 10.96 21.82 0.24 -44.25 16 14 Si 0.98 38.95 29.60 68.60 2.03 40.98 16 15 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 16 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 17 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 18 C -0.20 -10.47 9.74 22.48 0.22 -10.25 16 19 C -0.12 -5.92 9.92 22.11 0.22 -5.70 16 20 C 0.01 0.18 6.11 44.91 0.27 0.45 16 21 C -0.21 -3.30 9.51 30.62 0.29 -3.01 16 22 C -0.18 -3.22 9.99 30.62 0.31 -2.91 16 23 H 0.05 0.89 7.23 -2.39 -0.02 0.87 16 24 H 0.07 1.59 6.63 -2.39 -0.02 1.57 16 25 H 0.05 1.50 6.37 -2.39 -0.02 1.48 16 26 H 0.08 1.44 8.12 -2.38 -0.02 1.42 16 27 H 0.09 2.05 7.96 -2.39 -0.02 2.03 16 28 H 0.05 1.56 5.85 -2.38 -0.01 1.55 16 29 H 0.06 1.86 7.64 -2.38 -0.02 1.84 16 30 H 0.12 4.85 6.27 -2.91 -0.02 4.83 16 31 H 0.11 5.93 6.16 -2.91 -0.02 5.91 16 32 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 33 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 34 H 0.12 5.00 8.06 -2.91 -0.02 4.97 16 35 H 0.13 2.22 7.93 -2.39 -0.02 2.21 16 36 H 0.10 1.58 5.90 -2.38 -0.01 1.57 16 37 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 1.75 7.56 -2.38 -0.02 1.73 16 Total: -1.00 -62.38 316.48 2.19 -60.19 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 1.04 Total: 29.11 kcal Atomic # 6 Polarization: -58.48 SS G_CDS: 4.21 Total: -54.28 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -4.17 Total: -62.02 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.90 Total: -13.98 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -62.38 2.19 -60.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.299 kcal (2) G-P(sol) polarization free energy of solvation -62.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds