Wall clock time and date at job start Mon Mar 30 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47437 * 2 1 4 4 N 1.46904 * 109.46955 * 239.99955 * 2 1 3 5 5 C 1.46895 * 110.99954 * 85.00515 * 4 2 1 6 6 C 1.50702 * 109.47015 * 179.97438 * 5 4 2 7 7 C 1.38122 * 120.03153 * 259.99667 * 6 5 4 8 8 C 1.38281 * 120.06590 * 179.97438 * 7 6 5 9 9 C 1.38326 * 120.14174 * 0.05096 * 8 7 6 10 10 C 1.38076 * 120.06774 * 359.97438 * 9 8 7 11 11 C 1.38853 * 120.03768 * 79.71955 * 6 5 4 12 12 O 1.35758 * 120.06756 * 0.02562 * 11 6 5 13 13 C 1.34827 * 116.99999 * 174.12809 * 12 11 6 14 14 H 1.08006 * 120.00192 * 5.05684 * 13 12 11 15 15 C 1.38655 * 119.99919 * 185.05885 * 13 12 11 16 16 N 1.31560 * 119.99808 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99867 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47259 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46912 * 120.00344 * 17 15 13 20 20 H 1.48500 * 109.46803 * 240.00039 * 17 15 13 21 21 C 1.52994 * 109.46876 * 120.00318 * 2 1 3 22 22 C 1.53010 * 117.50007 * 231.37671 * 21 2 1 23 23 C 1.53005 * 59.99916 * 107.48710 * 22 21 2 24 24 H 1.09006 * 109.46788 * 60.00317 * 1 2 3 25 25 H 1.08999 * 109.47235 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47206 * 300.00599 * 1 2 3 27 27 H 1.00899 * 111.00425 * 321.04216 * 4 2 1 28 28 H 1.09001 * 109.47068 * 299.99419 * 5 4 2 29 29 H 1.09001 * 109.47441 * 59.99597 * 5 4 2 30 30 H 1.08004 * 119.96973 * 359.97438 * 7 6 5 31 31 H 1.08009 * 119.92961 * 180.02562 * 8 7 6 32 32 H 1.07997 * 119.96439 * 179.97438 * 9 8 7 33 33 H 1.07995 * 120.03785 * 180.02562 * 10 9 8 34 34 H 0.96997 * 119.99462 * 179.97438 * 16 15 13 35 35 H 1.09006 * 115.56769 * 85.68918 * 21 2 1 36 36 H 1.08993 * 117.50111 * 214.97840 * 22 21 2 37 37 H 1.09005 * 117.49357 * 0.02562 * 22 21 2 38 38 H 1.08994 * 117.49840 * 252.51256 * 23 22 21 39 39 H 1.09004 * 117.49545 * 107.49369 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5885 -0.5216 -3.5557 7 6 3.9113 -0.4047 -3.9357 8 6 4.3765 -1.0876 -5.0445 9 6 3.5191 -1.8888 -5.7770 10 6 2.1956 -2.0093 -5.4025 11 6 1.7269 -1.3299 -4.2853 12 8 0.4275 -1.4508 -3.9112 13 6 -0.3825 -2.1519 -4.7300 14 1 0.0271 -2.6555 -5.5932 15 6 -1.7412 -2.2263 -4.4638 16 7 -2.2401 -1.6123 -3.4127 17 14 -2.8634 -3.1970 -5.5986 18 1 -2.0622 -3.7880 -6.7003 19 1 -3.5248 -4.2824 -4.8308 20 1 -3.8954 -2.2926 -6.1664 21 6 2.0399 -0.7213 1.2492 22 6 3.0741 0.0051 2.1117 23 6 1.6356 -0.1495 2.6096 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.4496 -1.4980 -1.4101 28 1 1.0871 0.6163 -2.5526 29 1 2.7589 1.0462 -2.1182 30 1 4.5830 0.2207 -3.3663 31 1 5.4114 -0.9950 -5.3394 32 1 3.8854 -2.4205 -6.6427 33 1 1.5268 -2.6352 -5.9746 34 1 -3.1907 -1.6641 -3.2267 35 1 2.1270 -1.8046 1.1643 36 1 3.8414 -0.6002 2.5942 37 1 3.3908 0.9970 1.7894 38 1 1.0064 0.7404 2.6145 39 1 1.4566 -0.8566 3.4197 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035012484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:14 Heat of formation + Delta-G solvation = -1.234301 kcal Electronic energy + Delta-G solvation = -19509.227987 eV Core-core repulsion = 16610.238314 eV Total energy + Delta-G solvation = -2898.989673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.87428 -39.22239 -38.08115 -36.21027 -34.24820 -32.73615 -30.62917 -29.70468 -27.35085 -26.21309 -24.10757 -23.25854 -23.06294 -21.99481 -20.91430 -19.75856 -18.60195 -17.05181 -16.74588 -16.48198 -16.20514 -15.77616 -15.47178 -15.27623 -15.04495 -14.88675 -14.45161 -13.92309 -13.79222 -13.52670 -13.44495 -12.97157 -12.85415 -12.73652 -12.50019 -12.26965 -12.20169 -12.13501 -12.05141 -11.74494 -11.21857 -11.03937 -10.82782 -10.78345 -9.65827 -9.27047 -8.88679 -8.43936 -6.09747 0.60496 0.80734 1.34495 1.41629 1.50791 2.17385 2.83026 2.95093 3.16273 3.47568 3.56096 3.86082 4.04412 4.11478 4.12426 4.25598 4.30692 4.35599 4.46200 4.51909 4.58137 4.66319 4.71628 4.78953 4.85276 4.86938 5.01908 5.09343 5.15908 5.20610 5.27124 5.33028 5.36695 5.41055 5.71171 5.77626 5.83317 6.03969 6.19387 6.31443 6.38021 7.01840 7.82222 8.77480 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.006917 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.898642 B = 4047.222971 C = 5766.226635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.118 3.882 3 H 0.081 0.919 4 N -0.673 5.673 5 C 0.126 3.874 6 C -0.165 4.165 7 C -0.060 4.060 8 C -0.194 4.194 9 C -0.076 4.076 10 C -0.252 4.252 11 C 0.119 3.881 12 O -0.217 6.217 13 C -0.410 4.410 14 H 0.095 0.905 15 C -0.016 4.016 16 N -0.910 5.910 17 Si 1.010 2.990 18 H -0.256 1.256 19 H -0.271 1.271 20 H -0.271 1.271 21 C -0.150 4.150 22 C -0.165 4.165 23 C -0.173 4.173 24 H 0.029 0.971 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.332 0.668 28 H 0.005 0.995 29 H 0.091 0.909 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.114 0.886 34 H 0.269 0.731 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 2.710 5.058 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 H 0.099 0.901 4 N -0.301 5.301 5 C -0.002 4.002 6 C -0.167 4.167 7 C -0.079 4.079 8 C -0.212 4.212 9 C -0.095 4.095 10 C -0.271 4.271 11 C 0.068 3.932 12 O -0.123 6.123 13 C -0.487 4.487 14 H 0.112 0.888 15 C -0.215 4.215 16 N -0.548 5.548 17 Si 0.831 3.169 18 H -0.179 1.179 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.169 4.169 22 C -0.202 4.202 23 C -0.210 4.210 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.149 0.851 28 H 0.024 0.976 29 H 0.109 0.891 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.811 2.919 5.515 11.628 hybrid contribution -2.034 -0.545 -0.914 2.296 sum 7.777 2.374 4.601 9.343 Atomic orbital electron populations 1.22287 0.97622 1.01143 1.01163 1.21101 0.91715 0.97116 0.89214 0.90128 1.60815 1.56546 1.09388 1.03394 1.20459 0.97776 0.94195 0.87817 1.19228 0.94405 1.03304 0.99766 1.20981 0.92657 0.98039 0.96180 1.21147 1.00701 1.01581 0.97772 1.21150 0.91843 0.97246 0.99212 1.21291 0.98164 1.06863 1.00768 1.19775 0.85501 0.94208 0.93736 1.83927 1.15397 1.66540 1.46406 1.21740 0.89129 1.29601 1.08211 0.88802 1.26362 0.97485 0.98660 0.98945 1.70174 1.13906 1.42918 1.27783 0.84634 0.77441 0.77424 0.77415 1.17921 1.19568 1.19637 1.22057 1.05307 0.98840 0.90719 1.23021 0.92380 1.01924 1.02851 1.23026 0.98309 1.03384 0.96292 0.95220 0.94423 0.90568 0.85104 0.97645 0.89121 0.83692 0.83426 0.84246 0.86813 0.92217 0.89109 0.88057 0.88453 0.88442 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 9.00 71.98 0.65 -5.20 16 2 C 0.12 3.81 2.82 44.91 0.13 3.94 16 3 H 0.08 2.40 7.56 -2.39 -0.02 2.38 16 4 N -0.67 -25.59 6.24 -495.59 -3.09 -28.68 16 5 C 0.13 4.96 5.27 85.56 0.45 5.41 16 6 C -0.17 -6.90 5.41 -19.74 -0.11 -7.01 16 7 C -0.06 -2.03 9.66 22.25 0.22 -1.82 16 8 C -0.19 -6.05 10.04 22.30 0.22 -5.83 16 9 C -0.08 -2.66 10.04 22.25 0.22 -2.44 16 10 C -0.25 -11.09 9.17 22.39 0.21 -10.88 16 11 C 0.12 5.82 6.61 22.58 0.15 5.97 16 12 O -0.22 -12.47 8.93 -22.80 -0.20 -12.67 16 13 C -0.41 -23.51 9.49 67.92 0.64 -22.87 16 14 H 0.09 5.06 5.20 -2.91 -0.02 5.05 16 15 C -0.02 -0.91 5.49 84.83 0.47 -0.45 16 16 N -0.91 -54.27 13.67 21.61 0.30 -53.98 16 17 Si 1.01 42.99 29.55 68.60 2.03 45.01 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 21 C -0.15 -4.13 5.45 -10.79 -0.06 -4.19 16 22 C -0.16 -3.56 10.18 30.60 0.31 -3.25 16 23 C -0.17 -3.74 9.73 30.60 0.30 -3.44 16 24 H 0.03 1.22 7.45 -2.38 -0.02 1.21 16 25 H 0.04 1.49 8.13 -2.39 -0.02 1.47 16 26 H 0.08 2.26 7.29 -2.39 -0.02 2.24 16 27 H 0.33 14.93 8.38 -89.69 -0.75 14.17 16 28 H 0.01 0.25 7.16 -2.39 -0.02 0.23 16 29 H 0.09 2.99 7.92 -2.39 -0.02 2.97 16 30 H 0.15 3.92 8.04 -2.91 -0.02 3.89 16 31 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 32 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 33 H 0.11 5.15 5.64 -2.91 -0.02 5.14 16 34 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 1.97 8.05 -2.38 -0.02 1.95 16 38 H 0.10 2.00 7.61 -2.39 -0.02 1.98 16 39 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -65.19 325.36 3.12 -62.07 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: 0.29 Total: 40.29 kcal Atomic # 6 Polarization: -55.85 SS G_CDS: 3.80 Total: -52.05 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -2.80 Total: -82.66 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.20 Total: -12.67 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -65.19 3.12 -62.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035012484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.839 kcal (2) G-P(sol) polarization free energy of solvation -65.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds