Wall clock time and date at job start Mon Mar 30 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46717 * 2 1 4 4 N 1.46899 * 109.47305 * 120.00088 * 2 1 3 5 5 C 1.46901 * 111.00012 * 275.00322 * 4 2 1 6 6 C 1.50701 * 109.47277 * 179.97438 * 5 4 2 7 7 C 1.38121 * 120.03549 * 260.00516 * 6 5 4 8 8 C 1.38277 * 120.06553 * 180.23045 * 7 6 5 9 9 C 1.38322 * 120.14212 * 359.48544 * 8 7 6 10 10 C 1.38077 * 120.06723 * 0.51117 * 9 8 7 11 11 C 1.38858 * 120.03520 * 79.97260 * 6 5 4 12 12 O 1.35754 * 120.06718 * 0.02562 * 11 6 5 13 13 C 1.34837 * 117.00266 * 174.41833 * 12 11 6 14 14 H 1.07998 * 119.99309 * 5.06068 * 13 12 11 15 15 C 1.38653 * 120.00284 * 185.06353 * 13 12 11 16 16 N 1.31556 * 120.00031 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99981 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46898 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47354 * 119.99881 * 17 15 13 20 20 H 1.48496 * 109.46970 * 240.00282 * 17 15 13 21 21 C 1.52999 * 109.47322 * 240.00425 * 2 1 3 22 22 C 1.53005 * 117.49882 * 128.61726 * 21 2 1 23 23 C 1.52997 * 117.49835 * 59.99720 * 21 2 1 24 24 H 1.09003 * 109.46717 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47222 * 299.99513 * 1 2 3 26 26 H 1.08999 * 109.47235 * 59.99878 * 1 2 3 27 27 H 1.00907 * 111.00137 * 151.04965 * 4 2 1 28 28 H 1.08996 * 109.47496 * 60.00133 * 5 4 2 29 29 H 1.09007 * 109.47291 * 299.99650 * 5 4 2 30 30 H 1.07991 * 119.96731 * 359.94706 * 7 6 5 31 31 H 1.08005 * 119.92766 * 179.73746 * 8 7 6 32 32 H 1.08003 * 119.96534 * 180.27876 * 9 8 7 33 33 H 1.07997 * 120.03731 * 179.76669 * 10 9 8 34 34 H 0.96996 * 120.00032 * 179.97438 * 16 15 13 35 35 H 1.08995 * 115.54889 * 274.32828 * 21 2 1 36 36 H 1.09003 * 117.49762 * 0.02562 * 22 21 2 37 37 H 1.08996 * 117.49826 * 145.02053 * 22 21 2 38 38 H 1.09004 * 117.49920 * 214.97767 * 23 21 2 39 39 H 1.09000 * 117.50252 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5873 -0.5218 3.5560 7 6 1.6976 -0.9741 4.5108 8 6 2.1606 -1.6530 5.6229 9 6 3.5144 -1.8908 5.7777 10 6 4.4089 -1.4413 4.8267 11 6 3.9475 -0.7544 3.7111 12 8 4.8244 -0.3113 2.7744 13 6 6.1368 -0.4678 3.0416 14 1 6.4473 -1.0010 3.9280 15 6 7.0873 0.0557 2.1787 16 7 6.7089 0.7056 1.0993 17 14 8.9053 -0.1618 2.5487 18 1 9.0654 -0.9235 3.8134 19 1 9.5512 -0.9054 1.4373 20 1 9.5446 1.1710 2.6899 21 6 2.0400 -0.7211 -1.2493 22 6 3.0741 0.0054 -2.1117 23 6 1.6357 -0.1494 -2.6096 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 2.9174 -1.1205 1.0287 28 1 1.0871 0.6162 2.5526 29 1 2.7588 1.0462 2.1183 30 1 0.6397 -0.7932 4.3910 31 1 1.4633 -2.0019 6.3702 32 1 3.8725 -2.4253 6.6452 33 1 5.4662 -1.6240 4.9499 34 1 7.3739 1.0722 0.4957 35 1 2.1268 -1.8043 -1.1643 36 1 3.3914 0.9970 -1.7888 37 1 3.8416 -0.5998 -2.5942 38 1 1.4569 -0.8564 -3.4197 39 1 1.0060 0.7403 -2.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035012486.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:16 Heat of formation + Delta-G solvation = -1.390811 kcal Electronic energy + Delta-G solvation = -19547.444554 eV Core-core repulsion = 16648.448094 eV Total energy + Delta-G solvation = -2898.996460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.88209 -39.28409 -38.09480 -36.14055 -34.25845 -32.68729 -30.67538 -29.83651 -27.38885 -26.37895 -23.88800 -23.25031 -23.15611 -21.91885 -20.89653 -19.76950 -18.61053 -17.46794 -16.57870 -16.48597 -16.19051 -15.83614 -15.49369 -15.37640 -15.06113 -14.83788 -14.46393 -14.13059 -13.68285 -13.51781 -13.20701 -12.99107 -12.89746 -12.71654 -12.50734 -12.30374 -12.24122 -12.13825 -12.05139 -11.61799 -11.29547 -11.10364 -10.88344 -10.79520 -9.66933 -9.34163 -8.90185 -8.44770 -6.10961 0.59719 0.80091 1.33567 1.40937 1.50112 2.16633 2.80856 2.89205 3.13002 3.43758 3.54739 3.74980 3.97492 4.08310 4.11502 4.15262 4.34468 4.35530 4.45523 4.50374 4.60715 4.70501 4.72758 4.74628 4.86017 4.95169 4.98525 5.09926 5.15075 5.19617 5.20807 5.27632 5.35671 5.43736 5.70823 5.76846 5.82560 6.03178 6.17312 6.30744 6.36798 7.00817 7.81429 8.76837 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.007970 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.278905 B = 3512.504003 C = 5540.934192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.111 3.889 3 H 0.020 0.980 4 N -0.671 5.671 5 C 0.127 3.873 6 C -0.166 4.166 7 C -0.059 4.059 8 C -0.193 4.193 9 C -0.076 4.076 10 C -0.251 4.251 11 C 0.118 3.882 12 O -0.218 6.218 13 C -0.411 4.411 14 H 0.095 0.905 15 C -0.017 4.017 16 N -0.911 5.911 17 Si 1.010 2.990 18 H -0.255 1.255 19 H -0.270 1.270 20 H -0.271 1.271 21 C -0.163 4.163 22 C -0.197 4.197 23 C -0.142 4.142 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.332 0.668 28 H 0.091 0.909 29 H 0.000 1.000 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.114 0.886 34 H 0.269 0.731 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.104 -2.622 -0.165 10.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.001 3.999 3 H 0.038 0.962 4 N -0.301 5.301 5 C -0.001 4.001 6 C -0.168 4.168 7 C -0.078 4.078 8 C -0.211 4.211 9 C -0.094 4.094 10 C -0.270 4.270 11 C 0.067 3.933 12 O -0.124 6.124 13 C -0.488 4.488 14 H 0.113 0.887 15 C -0.215 4.215 16 N -0.549 5.549 17 Si 0.831 3.169 18 H -0.178 1.178 19 H -0.195 1.195 20 H -0.196 1.196 21 C -0.182 4.182 22 C -0.234 4.234 23 C -0.179 4.179 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.149 0.851 28 H 0.110 0.890 29 H 0.018 0.982 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.132 0.868 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.682 -2.644 -0.388 11.012 hybrid contribution 2.279 0.608 -0.143 2.363 sum -8.404 -2.036 -0.531 8.663 Atomic orbital electron populations 1.21678 0.92276 1.02512 1.01697 1.21150 0.96954 0.93972 0.87787 0.96221 1.60882 1.32823 1.32217 1.04197 1.20460 0.99038 0.92101 0.88529 1.19218 0.89946 1.07736 0.99853 1.20977 0.99049 0.95326 0.92442 1.21149 0.95423 1.04703 0.99870 1.21157 0.93478 0.97200 0.97556 1.21288 1.00695 1.07337 0.97728 1.19782 0.90823 0.93325 0.89321 1.83931 1.16358 1.72549 1.39588 1.21758 0.79176 1.37115 1.10701 0.88722 1.26381 1.04661 0.95495 0.94952 1.70177 1.35987 1.35796 1.12926 0.84635 0.74717 0.78581 0.78991 1.17833 1.19504 1.19614 1.22379 1.04468 0.99228 0.92099 1.22962 0.93689 1.01473 1.05264 1.22996 0.95940 1.03312 0.95673 0.91861 0.92813 0.90950 0.85122 0.89032 0.98189 0.83643 0.83347 0.84180 0.86796 0.92195 0.87924 0.90804 0.89191 0.86822 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.26 71.98 0.67 -2.48 16 2 C 0.11 3.65 2.84 44.91 0.13 3.78 16 3 H 0.02 0.73 7.56 -2.39 -0.02 0.71 16 4 N -0.67 -25.87 6.30 -495.57 -3.12 -28.99 16 5 C 0.13 5.10 5.28 85.56 0.45 5.56 16 6 C -0.17 -6.98 5.41 -19.74 -0.11 -7.09 16 7 C -0.06 -2.02 9.66 22.25 0.22 -1.80 16 8 C -0.19 -6.02 10.04 22.30 0.22 -5.80 16 9 C -0.08 -2.64 10.04 22.25 0.22 -2.42 16 10 C -0.25 -11.11 9.17 22.39 0.21 -10.90 16 11 C 0.12 5.84 6.62 22.58 0.15 5.99 16 12 O -0.22 -12.69 8.95 -22.86 -0.20 -12.89 16 13 C -0.41 -23.73 9.49 67.92 0.64 -23.08 16 14 H 0.10 5.13 5.20 -2.91 -0.02 5.11 16 15 C -0.02 -0.94 5.49 84.83 0.47 -0.48 16 16 N -0.91 -54.82 13.67 21.61 0.30 -54.53 16 17 Si 1.01 43.18 29.55 68.60 2.03 45.20 16 18 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 21 C -0.16 -5.03 5.11 -10.79 -0.06 -5.08 16 22 C -0.20 -6.27 10.18 30.60 0.31 -5.96 16 23 C -0.14 -3.40 9.73 30.59 0.30 -3.10 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 25 H 0.05 1.32 7.45 -2.39 -0.02 1.31 16 26 H 0.07 1.52 7.29 -2.39 -0.02 1.50 16 27 H 0.33 15.10 8.30 -89.69 -0.74 14.35 16 28 H 0.09 3.08 7.30 -2.39 -0.02 3.06 16 29 H 0.00 -0.01 7.77 -2.38 -0.02 -0.02 16 30 H 0.15 3.92 8.03 -2.92 -0.02 3.90 16 31 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 32 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 33 H 0.11 5.17 5.64 -2.91 -0.02 5.16 16 34 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.07 2.64 8.05 -2.39 -0.02 2.62 16 37 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.11 2.24 7.61 -2.39 -0.02 2.22 16 Total: -1.00 -66.34 325.31 3.12 -63.23 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: 0.30 Total: 40.84 kcal Atomic # 6 Polarization: -56.68 SS G_CDS: 3.82 Total: -52.86 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.83 Total: -83.52 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.20 Total: -12.89 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -66.34 3.12 -63.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035012486.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.836 kcal (2) G-P(sol) polarization free energy of solvation -66.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds