Wall clock time and date at job start Mon Mar 30 2020 06:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99523 * 2 1 4 4 C 1.38745 * 120.05769 * 0.04591 * 3 2 1 5 5 C 1.38122 * 119.94745 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11401 * 359.97438 * 6 5 4 8 8 C 1.50692 * 119.97024 * 180.02562 * 7 6 5 9 9 C 1.53780 * 113.61629 * 37.50442 * 8 7 6 10 10 C 1.53788 * 87.07970 * 220.01648 * 9 8 7 11 11 N 1.46902 * 113.61643 * 139.98001 * 10 9 8 12 12 C 1.46900 * 111.00052 * 107.50074 * 11 10 9 13 13 C 1.50701 * 109.46978 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99736 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99950 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00219 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99902 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46944 * 90.00257 * 17 15 13 19 19 H 1.48499 * 109.47064 * 210.00071 * 17 15 13 20 20 H 1.48495 * 109.47085 * 330.00259 * 17 15 13 21 21 C 1.53779 * 113.61771 * 300.00105 * 8 7 6 22 22 C 1.38169 * 120.05492 * 0.02562 * 7 6 5 23 23 H 1.08995 * 109.47252 * 60.00318 * 1 2 3 24 24 H 1.09003 * 109.46721 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47018 * 299.99822 * 1 2 3 26 26 H 1.08002 * 120.02960 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.97891 * 180.29661 * 5 4 3 28 28 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 29 29 H 1.09004 * 112.84589 * 168.80588 * 8 7 6 30 30 H 1.09001 * 113.61076 * 334.56010 * 9 8 7 31 31 H 1.08999 * 113.62046 * 105.46838 * 9 8 7 32 32 H 1.09002 * 113.60951 * 270.87811 * 10 9 8 33 33 H 1.00906 * 110.99658 * 343.54872 * 11 10 9 34 34 H 1.09005 * 109.47097 * 300.00002 * 12 11 10 35 35 H 1.09001 * 109.47193 * 59.99629 * 12 11 10 36 36 H 0.96998 * 120.00224 * 180.02562 * 16 15 13 37 37 H 1.09004 * 113.61287 * 254.52992 * 21 8 7 38 38 H 1.08997 * 113.61296 * 25.34863 * 21 8 7 39 39 H 1.07999 * 120.02729 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 0.0010 5 6 1.9207 3.6048 0.0015 6 6 3.3018 3.6759 0.0005 7 6 4.0559 2.5172 -0.0004 8 6 5.5607 2.5984 -0.0009 9 6 6.1159 3.7472 0.8575 10 6 7.1512 3.9745 -0.2568 11 7 7.4148 5.3927 -0.5348 12 6 8.7385 5.7897 -0.0366 13 6 8.9725 7.2474 -0.3387 14 1 8.2136 7.8216 -0.8493 15 6 10.1550 7.8483 0.0377 16 7 10.3594 9.1203 -0.2263 17 14 11.4667 6.8555 0.9229 18 1 12.3827 6.2455 -0.0742 19 1 12.2392 7.7481 1.8237 20 1 10.8209 5.7838 1.7225 21 6 6.1375 3.3359 -1.2208 22 6 3.4311 1.2849 -0.0010 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2127 2.3203 0.0013 27 1 1.3338 4.5114 0.0071 28 1 3.7920 4.6382 0.0005 29 1 6.0364 1.6371 0.1934 30 1 5.4188 4.5760 0.9814 31 1 6.5536 3.4166 1.7993 32 1 8.0627 3.3902 -0.1316 33 1 6.6912 5.9782 -0.1451 34 1 8.7840 5.6304 1.0408 35 1 9.5057 5.1892 -0.5253 36 1 11.1915 9.5429 0.0382 37 1 6.5926 2.6729 -1.9567 38 1 5.4458 4.0510 -1.6659 39 1 4.0207 0.3800 -0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036844796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:44 Heat of formation + Delta-G solvation = 5.564919 kcal Electronic energy + Delta-G solvation = -18639.703776 eV Core-core repulsion = 15741.008940 eV Total energy + Delta-G solvation = -2898.694837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.47631 -39.17587 -37.07068 -34.07236 -32.12728 -31.10990 -30.03145 -27.59821 -27.00582 -25.40216 -24.03187 -22.71014 -21.40914 -20.76982 -19.26921 -17.78876 -16.73666 -16.40618 -16.00242 -15.95973 -15.36296 -15.04025 -14.28601 -13.95503 -13.77869 -13.42318 -13.25992 -13.00581 -12.59214 -12.31975 -12.22281 -12.04456 -11.79201 -11.60561 -11.23314 -11.12608 -11.03423 -10.72355 -10.44608 -10.29515 -10.11375 -9.67433 -9.25477 -8.82769 -8.58571 -8.28871 -7.40482 -6.05324 -4.03247 1.22291 1.36647 3.05227 3.29429 3.36488 3.38736 3.64432 4.42521 4.59395 4.64951 4.81264 4.84304 4.86149 4.90252 4.98359 5.10925 5.16229 5.21644 5.27291 5.28492 5.39928 5.49862 5.59264 5.80965 5.93287 5.97972 6.02633 6.17159 6.24594 6.30790 6.39438 6.52446 6.66357 6.73035 6.80431 7.05220 7.23322 7.61926 7.93196 8.35336 8.66043 9.02669 9.56758 11.08007 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.052720 B = 0.003245 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.979488 B = 8626.133663 C = 8921.396612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.123 3.877 4 C -0.218 4.218 5 C -0.078 4.078 6 C -0.150 4.150 7 C -0.020 4.020 8 C -0.080 4.080 9 C -0.160 4.160 10 C 0.067 3.933 11 N -0.668 5.668 12 C 0.163 3.837 13 C -0.516 4.516 14 H 0.079 0.921 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.268 1.268 21 C -0.116 4.116 22 C -0.152 4.152 23 H 0.054 0.946 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.337 0.663 34 H -0.015 1.015 35 H 0.021 0.979 36 H 0.264 0.736 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.738 -17.357 1.879 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.079 3.921 4 C -0.237 4.237 5 C -0.096 4.096 6 C -0.168 4.168 7 C -0.021 4.021 8 C -0.098 4.098 9 C -0.199 4.199 10 C -0.045 4.045 11 N -0.297 5.297 12 C 0.035 3.965 13 C -0.555 4.555 14 H 0.097 0.903 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.154 4.154 22 C -0.170 4.170 23 H 0.073 0.927 24 H 0.116 0.884 25 H 0.072 0.928 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.156 0.844 34 H 0.002 0.998 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.273 -17.489 1.252 25.324 hybrid contribution 0.284 -0.281 1.440 1.494 sum -17.989 -17.770 2.692 25.428 Atomic orbital electron populations 1.23021 0.78620 1.03722 1.01302 1.86060 1.21209 1.27200 1.88942 1.18996 0.92294 0.84006 0.96853 1.21168 0.99737 0.92506 1.10241 1.20934 0.94636 0.96893 0.97183 1.21040 0.93519 0.98656 1.03595 1.19598 0.95296 0.91916 0.95258 1.21488 0.89915 0.99041 0.99392 1.23865 0.99582 0.97970 0.98482 1.22976 0.95911 0.92201 0.93379 1.60384 1.05794 1.00428 1.63122 1.20033 0.86803 0.97155 0.92489 1.21081 1.03457 0.92979 1.37955 0.90338 1.24915 0.98082 0.94810 0.95579 1.69899 1.25808 1.10757 1.47516 0.86817 0.82157 0.80347 0.80159 1.20157 1.21248 1.19230 1.23176 0.98256 0.98393 0.95568 1.20307 0.91134 0.98277 1.07314 0.92715 0.88411 0.92759 0.85848 0.85813 0.85369 0.88634 0.89514 0.91733 0.89280 0.84425 0.99765 0.96048 0.92664 0.91569 0.89477 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.46 10.50 -19.44 -0.20 -3.66 16 3 C 0.12 1.44 6.69 -39.22 -0.26 1.18 16 4 C -0.22 -2.28 9.04 -39.44 -0.36 -2.64 16 5 C -0.08 -0.84 10.04 -39.60 -0.40 -1.24 16 6 C -0.15 -1.80 8.61 -39.56 -0.34 -2.14 16 7 C -0.02 -0.25 5.29 -104.65 -0.55 -0.81 16 8 C -0.08 -0.99 3.98 -90.96 -0.36 -1.35 16 9 C -0.16 -2.21 7.07 -25.92 -0.18 -2.39 16 10 C 0.07 1.09 4.18 -66.90 -0.28 0.81 16 11 N -0.67 -13.64 6.61 -107.12 -0.71 -14.35 16 12 C 0.16 3.95 4.35 -4.98 -0.02 3.93 16 13 C -0.52 -14.83 9.87 -34.44 -0.34 -15.17 16 14 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 17 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 21 C -0.12 -1.61 7.35 -25.92 -0.19 -1.80 16 22 C -0.15 -1.84 9.65 -39.43 -0.38 -2.22 16 23 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 24 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 26 H 0.12 1.00 6.30 -52.49 -0.33 0.67 16 27 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.13 1.51 6.65 -52.49 -0.35 1.16 16 29 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 30 H 0.09 1.18 5.99 -51.93 -0.31 0.87 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.47 7.87 -51.93 -0.41 1.06 16 33 H 0.34 6.63 8.19 -39.29 -0.32 6.31 16 34 H -0.02 -0.37 7.20 -51.93 -0.37 -0.75 16 35 H 0.02 0.53 7.56 -51.93 -0.39 0.14 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.25 7.72 -51.93 -0.40 0.85 16 39 H 0.13 1.41 8.05 -52.49 -0.42 0.98 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -31.69 318.47 -8.59 -40.28 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.81 Total: 3.75 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -2.77 Total: -20.77 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.07 Total: -41.39 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -0.20 Total: -3.66 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.69 -8.59 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036844796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.842 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds