Wall clock time and date at job start Mon Mar 30 2020 07:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47206 * 2 1 4 4 H 1.09008 * 109.46596 * 54.99786 * 3 2 1 5 5 C 1.52998 * 109.46936 * 295.00294 * 3 2 1 6 6 C 1.52998 * 109.46823 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47339 * 59.99824 * 6 5 3 8 8 H 1.08999 * 109.47058 * 179.97438 * 7 6 5 9 9 C 1.47209 * 109.47136 * 59.99871 * 7 6 5 10 10 N 5.05262 * 129.00372 * 305.51967 * 2 1 3 11 11 C 1.52990 * 109.47093 * 299.99910 * 7 6 5 12 12 H 1.08996 * 109.47427 * 299.99674 * 11 7 6 13 13 N 1.46495 * 109.47418 * 179.97438 * 11 7 6 14 14 C 1.36941 * 119.99928 * 299.99919 * 13 11 7 15 15 H 1.08003 * 120.00098 * 325.34174 * 14 13 11 16 16 C 1.38812 * 119.99987 * 145.33864 * 14 13 11 17 17 N 1.31621 * 120.00146 * 338.09503 * 16 14 13 18 18 Si 1.86804 * 119.99955 * 158.09369 * 16 14 13 19 19 H 1.48498 * 109.47283 * 90.00131 * 18 16 14 20 20 H 1.48500 * 109.47121 * 210.00163 * 18 16 14 21 21 H 1.48498 * 109.46895 * 329.99675 * 18 16 14 22 22 C 1.46494 * 120.00402 * 119.72239 * 13 11 7 23 23 C 1.47204 * 109.47214 * 84.49789 * 22 13 11 24 24 N 6.14000 * 140.09654 * 60.41400 * 2 1 3 25 25 C 1.52996 * 109.47180 * 174.99790 * 3 2 1 26 26 H 1.08993 * 109.46927 * 59.99698 * 1 2 3 27 27 H 1.08999 * 109.46852 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46908 * 299.99990 * 1 2 3 29 29 H 1.08991 * 109.47364 * 239.99904 * 2 1 3 30 30 H 1.09003 * 109.47004 * 119.99714 * 2 1 3 31 31 H 1.09005 * 109.46801 * 299.99666 * 5 3 2 32 32 H 1.08994 * 109.47342 * 59.99892 * 5 3 2 33 33 H 1.09010 * 109.46677 * 179.97438 * 6 5 3 34 34 H 1.08995 * 109.47181 * 299.99582 * 6 5 3 35 35 H 0.96995 * 119.99625 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.47549 * 204.50192 * 22 13 11 37 37 H 1.09004 * 109.47539 * 324.50186 * 22 13 11 38 38 H 1.08995 * 109.47149 * 60.00135 * 25 3 2 39 39 H 1.08995 * 109.47587 * 300.00118 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.1447 3.5692 -1.3070 7 6 3.6695 3.5717 -1.1810 8 1 4.0325 4.5994 -1.1813 9 6 4.2570 2.8440 -2.3179 10 7 4.7100 2.2812 -3.1958 11 6 4.0743 2.8877 0.1262 12 1 3.6394 3.4264 0.9680 13 7 5.5343 2.8894 0.2467 14 6 6.3003 2.2676 -0.7030 15 1 5.9431 1.3670 -1.1802 16 6 7.5360 2.7950 -1.0523 17 7 7.7967 4.0654 -0.8275 18 14 8.8288 1.7015 -1.8413 19 1 8.6739 1.7381 -3.3178 20 1 10.1819 2.1902 -1.4734 21 1 8.6584 0.3071 -1.3600 22 6 6.1750 3.5614 1.3797 23 6 6.2115 2.6493 2.5346 24 7 6.2402 1.9447 3.4252 25 6 3.5648 1.4444 0.1258 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0699 1.5875 -2.1491 32 1 0.5490 2.1253 -1.3969 33 1 1.8566 4.0564 -2.2387 34 1 1.7097 4.1080 -0.4653 35 1 8.6600 4.4338 -1.0720 36 1 7.1921 3.8434 1.1072 37 1 5.6078 4.4550 1.6404 38 1 3.9995 0.9054 -0.7160 39 1 3.8532 0.9571 1.0571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037145981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:09 Heat of formation + Delta-G solvation = 50.032426 kcal Electronic energy + Delta-G solvation = -20382.210610 eV Core-core repulsion = 17517.736780 eV Total energy + Delta-G solvation = -2864.473830 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.36710 -36.25920 -35.33709 -34.54405 -33.16904 -31.50354 -29.65807 -28.78841 -26.67171 -24.27284 -23.13662 -21.95628 -20.49852 -19.85139 -17.39418 -16.52682 -15.67205 -15.38437 -14.80023 -14.43885 -14.20130 -13.99017 -13.77010 -13.37936 -13.07826 -12.68006 -12.51987 -12.18259 -12.05980 -11.87296 -11.69536 -11.57594 -11.25601 -11.17816 -11.05574 -10.90507 -10.83684 -10.77850 -10.67523 -10.36141 -10.24307 -10.21688 -9.89788 -9.75135 -9.47659 -8.66608 -6.99467 -6.09488 -3.60428 3.29738 3.38665 3.42733 3.63058 3.78236 3.92541 3.96555 4.38298 4.73853 4.94043 5.02438 5.04579 5.10999 5.31261 5.38265 5.41515 5.45297 5.59423 5.71621 5.75325 5.87063 5.95678 5.98697 6.03458 6.11479 6.12653 6.25193 6.30401 6.32909 6.38559 6.48146 6.52275 6.65446 6.82849 6.94651 7.13507 7.68671 8.18073 8.57948 8.78800 8.89546 9.50662 10.02111 10.95181 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.008007 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.442805 B = 3496.077791 C = 4103.623868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.085 4.085 4 H 0.068 0.932 5 C -0.117 4.117 6 C -0.109 4.109 7 C 0.000 4.000 8 H 0.107 0.893 9 C 0.251 3.749 10 N -0.466 5.466 11 C 0.181 3.819 12 H 0.073 0.927 13 N -0.567 5.567 14 C -0.265 4.265 15 H 0.070 0.930 16 C 0.026 3.974 17 N -0.881 5.881 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.220 3.780 23 C 0.208 3.792 24 N -0.499 5.499 25 C -0.126 4.126 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.261 0.739 36 H 0.139 0.861 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.729 1.507 1.319 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.104 4.104 4 H 0.087 0.913 5 C -0.155 4.155 6 C -0.148 4.148 7 C -0.023 4.023 8 H 0.125 0.875 9 C -0.065 4.065 10 N -0.143 5.143 11 C 0.073 3.927 12 H 0.091 0.909 13 N -0.286 5.286 14 C -0.394 4.394 15 H 0.087 0.913 16 C -0.176 4.176 17 N -0.523 5.523 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.202 1.202 22 C 0.089 3.911 23 C -0.111 4.111 24 N -0.180 5.180 25 C -0.165 4.165 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.156 0.844 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.830 -0.265 1.245 11.898 hybrid contribution 0.780 -0.151 -0.414 0.896 sum -11.050 -0.417 0.831 11.089 Atomic orbital electron populations 1.21814 0.96355 1.01009 1.01665 1.21557 0.95281 0.97039 1.01866 1.21186 0.96321 0.95287 0.97573 0.91316 1.21673 1.00106 0.95687 0.97987 1.21561 0.93653 0.97219 1.02388 1.19325 0.93213 0.99368 0.90418 0.87467 1.28222 0.92017 0.93255 0.93028 1.81031 1.09248 1.10002 1.14024 1.20566 0.85030 0.93812 0.93296 0.90932 1.43796 0.99603 1.63811 1.21361 1.19005 0.99628 1.04898 1.15848 0.91282 1.25031 0.99943 0.94808 0.97778 1.69880 1.23205 1.10431 1.48743 0.86445 0.80930 0.80858 0.79702 1.20716 1.21201 1.20229 1.18924 1.04765 0.88594 0.78777 1.32007 0.90821 0.94313 0.93938 1.80956 1.11763 1.11459 1.13827 1.22063 0.93180 0.98888 1.02364 0.92589 0.93395 0.92939 0.92262 0.92249 0.92125 0.91966 0.91704 0.90507 0.92950 0.84386 0.90498 0.91593 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.67 37.16 0.36 -1.15 16 2 C -0.12 -1.45 5.40 -26.73 -0.14 -1.60 16 3 C -0.08 -1.07 2.19 -90.62 -0.20 -1.27 16 4 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 5 C -0.12 -1.41 4.74 -26.73 -0.13 -1.54 16 6 C -0.11 -1.27 5.43 -26.73 -0.15 -1.41 16 7 C 0.00 0.00 2.78 -93.41 -0.26 -0.26 16 8 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 9 C 0.25 4.95 9.23 -20.72 -0.19 4.76 16 10 N -0.47 -10.49 17.94 42.19 0.76 -9.73 16 11 C 0.18 3.00 2.54 -67.91 -0.17 2.82 16 12 H 0.07 1.04 7.87 -51.93 -0.41 0.63 16 13 N -0.57 -11.60 2.35 -168.95 -0.40 -12.00 16 14 C -0.26 -6.38 6.37 -15.06 -0.10 -6.47 16 15 H 0.07 1.80 6.01 -52.48 -0.32 1.48 16 16 C 0.03 0.66 4.92 -17.43 -0.09 0.57 16 17 N -0.88 -22.17 11.36 55.49 0.63 -21.54 16 18 Si 0.89 21.44 29.61 -169.99 -5.03 16.40 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.22 4.23 5.65 -6.83 -0.04 4.19 16 23 C 0.21 4.21 15.76 -20.76 -0.33 3.88 16 24 N -0.50 -10.88 18.54 42.16 0.78 -10.10 16 25 C -0.13 -2.05 4.23 -26.70 -0.11 -2.16 16 26 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.86 7.23 -51.93 -0.38 0.49 16 32 H 0.06 0.63 6.56 -51.93 -0.34 0.29 16 33 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 36 H 0.14 3.02 5.37 -51.93 -0.28 2.74 16 37 H 0.08 1.23 8.04 -51.93 -0.42 0.82 16 38 H 0.07 1.27 6.07 -51.93 -0.32 0.95 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -28.14 315.32 -5.78 -33.92 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.73 Total: -2.05 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.54 Total: 0.36 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 1.77 Total: -53.38 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.14 -5.78 -33.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037145981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.957 kcal (2) G-P(sol) polarization free energy of solvation -28.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds