Wall clock time and date at job start Mon Mar 30 2020 07:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47456 * 2 1 4 4 H 1.08997 * 109.46882 * 304.99195 * 3 2 1 5 5 C 1.52999 * 109.47444 * 65.00127 * 3 2 1 6 6 C 1.52994 * 109.47444 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47006 * 299.99803 * 6 5 3 8 8 H 1.09000 * 109.47311 * 299.99778 * 7 6 5 9 9 C 1.47202 * 109.47222 * 179.97438 * 7 6 5 10 10 N 6.84171 * 116.09857 * 11.08674 * 2 1 3 11 11 C 1.53007 * 109.47386 * 60.00053 * 7 6 5 12 12 H 1.08997 * 109.47175 * 179.97438 * 11 7 6 13 13 N 1.46500 * 109.47141 * 59.99719 * 11 7 6 14 14 C 1.36946 * 119.99959 * 357.44389 * 13 11 7 15 15 H 1.07995 * 120.00086 * 27.53479 * 14 13 11 16 16 C 1.38807 * 119.99810 * 207.53682 * 14 13 11 17 17 N 1.31621 * 120.00109 * 7.77845 * 16 14 13 18 18 Si 1.86797 * 120.00079 * 187.78094 * 16 14 13 19 19 H 1.48507 * 109.46950 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47293 * 119.99884 * 18 16 14 21 21 H 1.48499 * 109.47387 * 240.00011 * 18 16 14 22 22 C 1.46493 * 120.00270 * 177.44237 * 13 11 7 23 23 C 1.47196 * 109.47102 * 82.89771 * 22 13 11 24 24 N 3.56360 * 100.60209 * 290.47218 * 2 1 3 25 25 C 1.53002 * 109.46571 * 299.99929 * 11 7 6 26 26 H 1.08995 * 109.46796 * 300.00511 * 1 2 3 27 27 H 1.09003 * 109.47113 * 59.99968 * 1 2 3 28 28 H 1.08997 * 109.47528 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47252 * 239.99346 * 2 1 3 30 30 H 1.09008 * 109.46819 * 120.00423 * 2 1 3 31 31 H 1.08997 * 109.46647 * 299.99924 * 5 3 2 32 32 H 1.08997 * 109.47201 * 59.99256 * 5 3 2 33 33 H 1.08994 * 109.47281 * 179.97438 * 6 5 3 34 34 H 1.09009 * 109.47195 * 59.99283 * 6 5 3 35 35 H 0.97005 * 120.00071 * 179.97438 * 17 16 14 36 36 H 1.08995 * 109.47642 * 202.89921 * 22 13 11 37 37 H 1.09006 * 109.47116 * 322.90527 * 22 13 11 38 38 H 1.09003 * 109.46775 * 179.97438 * 25 11 7 39 39 H 1.08993 * 109.47293 * 299.99963 * 25 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6056 1.9814 -0.8419 5 6 1.6354 2.1265 1.3073 6 6 2.1460 3.5688 1.3076 7 6 3.6708 3.5699 1.1822 8 1 4.1051 3.0306 2.0241 9 6 4.1621 4.9575 1.1818 10 7 4.5398 6.0295 1.1815 11 6 4.0756 2.8858 -0.1252 12 1 5.1619 2.8870 -0.2147 13 7 3.4920 3.6106 -1.2567 14 6 2.6768 4.6880 -1.0326 15 1 2.7956 5.2777 -0.1357 16 6 1.6979 5.0219 -1.9583 17 7 1.4497 4.2199 -2.9720 18 14 0.7327 6.6095 -1.7654 19 1 1.1990 7.3280 -0.5522 20 1 0.9440 7.4656 -2.9602 21 1 -0.7127 6.2968 -1.6298 22 6 3.7805 3.1831 -2.6278 23 6 2.8807 2.0782 -2.9968 24 7 2.1856 1.2251 -3.2815 25 6 3.5650 1.4435 -0.1254 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5140 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5491 2.1253 1.3968 32 1 2.0699 1.5874 2.1491 33 1 1.8573 4.0562 2.2387 34 1 1.7118 4.1081 0.4656 35 1 0.7653 4.4531 -3.6187 36 1 3.6269 4.0197 -3.3093 37 1 4.8151 2.8463 -2.6933 38 1 3.8529 0.9563 -1.0569 39 1 3.9991 0.9043 0.7165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037145982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:11 Heat of formation + Delta-G solvation = 74.600746 kcal Electronic energy + Delta-G solvation = -21225.893233 eV Core-core repulsion = 18362.484766 eV Total energy + Delta-G solvation = -2863.408467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.56467 -35.87442 -35.49481 -34.24218 -32.77369 -31.51967 -29.40927 -28.79640 -26.68173 -24.27328 -23.12787 -21.57116 -20.21830 -18.89868 -17.49039 -17.34531 -16.03346 -15.18853 -14.42947 -14.14721 -13.81515 -13.68961 -13.29371 -13.12186 -12.94441 -12.58332 -12.37430 -12.19102 -11.84672 -11.74139 -11.54094 -11.28458 -11.14588 -11.05505 -10.91540 -10.88195 -10.80077 -10.48391 -10.41660 -10.23098 -9.91990 -9.66905 -9.62476 -9.61142 -9.23457 -8.52641 -7.04660 -6.03552 -3.50315 3.26444 3.36711 3.39202 3.51364 3.56344 4.11257 4.36636 4.50710 4.65370 5.11226 5.22970 5.29994 5.43589 5.52477 5.61574 5.69402 5.75045 5.85924 5.92465 6.03197 6.09890 6.15965 6.20843 6.26228 6.33818 6.45508 6.49953 6.55414 6.61290 6.66363 6.76647 6.89778 7.02347 7.05251 7.29011 7.45377 7.59381 8.11114 8.34571 8.89937 9.25319 9.50960 9.99859 11.02522 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.011298 C = 0.009266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.070823 B = 2477.725453 C = 3020.967361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.085 4.085 4 H 0.104 0.896 5 C -0.099 4.099 6 C -0.145 4.145 7 C 0.018 3.982 8 H 0.098 0.902 9 C 0.241 3.759 10 N -0.464 5.464 11 C 0.180 3.820 12 H 0.047 0.953 13 N -0.578 5.578 14 C -0.265 4.265 15 H 0.089 0.911 16 C 0.016 3.984 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.287 1.287 22 C 0.262 3.738 23 C 0.253 3.747 24 N -0.506 5.506 25 C -0.127 4.127 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.137 0.863 35 H 0.261 0.739 36 H 0.111 0.889 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.142 -5.552 6.565 9.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.104 4.104 4 H 0.123 0.877 5 C -0.136 4.136 6 C -0.182 4.182 7 C -0.004 4.004 8 H 0.116 0.884 9 C -0.075 4.075 10 N -0.141 5.141 11 C 0.072 3.928 12 H 0.065 0.935 13 N -0.301 5.301 14 C -0.394 4.394 15 H 0.106 0.894 16 C -0.185 4.185 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.214 1.214 22 C 0.132 3.868 23 C -0.065 4.065 24 N -0.187 5.187 25 C -0.167 4.167 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.154 0.846 35 H 0.071 0.929 36 H 0.128 0.872 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.589 -5.127 6.044 8.338 hybrid contribution -0.722 0.689 0.096 1.003 sum 1.867 -4.438 6.140 7.803 Atomic orbital electron populations 1.21752 0.96641 1.00250 1.01852 1.21499 0.95446 0.97616 1.00518 1.21155 0.95045 0.94630 0.99540 0.87739 1.21443 0.99990 0.95171 0.97012 1.22376 0.92284 0.98634 1.04939 1.18937 0.97995 0.84076 0.99372 0.88376 1.28731 0.92427 0.94869 0.91496 1.81123 1.10310 1.12173 1.10451 1.20529 0.95665 0.90312 0.86277 0.93524 1.43928 1.55902 1.31780 0.98464 1.19349 1.09690 1.02881 1.07430 0.89365 1.25041 0.97165 0.98126 0.98131 1.69705 1.33793 1.35502 1.14767 0.86289 0.79868 0.83191 0.78098 1.20006 1.21255 1.21396 1.18103 0.89998 0.90990 0.87682 1.30266 0.93090 0.91838 0.91293 1.80853 1.11388 1.16071 1.10410 1.22105 0.96546 0.97322 1.00710 0.93032 0.92600 0.94019 0.92552 0.93453 0.92431 0.93655 0.93497 0.84551 0.92860 0.87164 0.92986 0.92260 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.67 37.16 0.36 -1.92 16 2 C -0.11 -1.78 5.40 -26.74 -0.14 -1.93 16 3 C -0.09 -1.44 1.76 -90.62 -0.16 -1.60 16 4 H 0.10 2.24 6.01 -51.93 -0.31 1.93 16 5 C -0.10 -1.50 4.96 -26.73 -0.13 -1.64 16 6 C -0.14 -2.37 4.76 -26.74 -0.13 -2.50 16 7 C 0.02 0.28 2.34 -93.40 -0.22 0.06 16 8 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 9 C 0.24 4.38 11.43 -20.74 -0.24 4.15 16 10 N -0.46 -9.51 18.38 42.17 0.78 -8.74 16 11 C 0.18 2.94 2.71 -67.93 -0.18 2.75 16 12 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 13 N -0.58 -11.38 1.93 -168.98 -0.33 -11.71 16 14 C -0.26 -5.86 5.63 -15.06 -0.08 -5.95 16 15 H 0.09 2.00 3.55 -52.49 -0.19 1.81 16 16 C 0.02 0.37 5.12 -17.43 -0.09 0.28 16 17 N -0.89 -22.24 9.18 55.49 0.51 -21.73 16 18 Si 0.90 20.23 29.56 -169.99 -5.02 15.20 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.26 5.11 5.26 -6.83 -0.04 5.07 16 23 C 0.25 5.39 9.60 -20.74 -0.20 5.19 16 24 N -0.51 -11.55 18.38 42.18 0.78 -10.78 16 25 C -0.13 -1.97 4.18 -26.73 -0.11 -2.09 16 26 H 0.05 0.74 6.56 -51.93 -0.34 0.40 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 31 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.14 2.76 4.30 -51.92 -0.22 2.54 16 35 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.11 2.37 6.68 -51.93 -0.35 2.02 16 37 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 38 H 0.06 0.99 6.53 -51.93 -0.34 0.65 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 301.46 15.07 4.54 4.54 Total: -1.00 -26.22 301.46 -5.56 -31.79 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.45 Total: 1.52 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.36 Total: -0.10 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 1.73 Total: -52.96 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.22 -5.56 -31.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037145982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.389 kcal (2) G-P(sol) polarization free energy of solvation -26.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds