Wall clock time and date at job start Mon Mar 30 2020 07:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47456 * 2 1 4 4 H 1.08997 * 109.46882 * 304.99195 * 3 2 1 5 5 C 1.52999 * 109.47444 * 65.00127 * 3 2 1 6 6 C 1.52994 * 109.47444 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47006 * 299.99803 * 6 5 3 8 8 H 1.09000 * 109.47311 * 299.99778 * 7 6 5 9 9 C 1.47202 * 109.47222 * 179.97438 * 7 6 5 10 10 N 6.84171 * 116.09857 * 11.08674 * 2 1 3 11 11 C 1.53007 * 109.47386 * 60.00053 * 7 6 5 12 12 H 1.08997 * 109.47175 * 179.97438 * 11 7 6 13 13 N 1.46500 * 109.47141 * 59.99719 * 11 7 6 14 14 C 1.36946 * 119.99959 * 357.44389 * 13 11 7 15 15 H 1.07995 * 120.00086 * 27.53479 * 14 13 11 16 16 C 1.38807 * 119.99810 * 207.53682 * 14 13 11 17 17 N 1.31621 * 120.00109 * 7.77845 * 16 14 13 18 18 Si 1.86797 * 120.00079 * 187.78094 * 16 14 13 19 19 H 1.48507 * 109.46950 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47293 * 119.99884 * 18 16 14 21 21 H 1.48499 * 109.47387 * 240.00011 * 18 16 14 22 22 C 1.46493 * 120.00270 * 177.44237 * 13 11 7 23 23 C 1.47196 * 109.47102 * 82.89771 * 22 13 11 24 24 N 3.56360 * 100.60209 * 290.47218 * 2 1 3 25 25 C 1.53002 * 109.46571 * 299.99929 * 11 7 6 26 26 H 1.08995 * 109.46796 * 300.00511 * 1 2 3 27 27 H 1.09003 * 109.47113 * 59.99968 * 1 2 3 28 28 H 1.08997 * 109.47528 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47252 * 239.99346 * 2 1 3 30 30 H 1.09008 * 109.46819 * 120.00423 * 2 1 3 31 31 H 1.08997 * 109.46647 * 299.99924 * 5 3 2 32 32 H 1.08997 * 109.47201 * 59.99256 * 5 3 2 33 33 H 1.08994 * 109.47281 * 179.97438 * 6 5 3 34 34 H 1.09009 * 109.47195 * 59.99283 * 6 5 3 35 35 H 0.97005 * 120.00071 * 179.97438 * 17 16 14 36 36 H 1.08995 * 109.47642 * 202.89921 * 22 13 11 37 37 H 1.09006 * 109.47116 * 322.90527 * 22 13 11 38 38 H 1.09003 * 109.46775 * 179.97438 * 25 11 7 39 39 H 1.08993 * 109.47293 * 299.99963 * 25 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6056 1.9814 -0.8419 5 6 1.6354 2.1265 1.3073 6 6 2.1460 3.5688 1.3076 7 6 3.6708 3.5699 1.1822 8 1 4.1051 3.0306 2.0241 9 6 4.1621 4.9575 1.1818 10 7 4.5398 6.0295 1.1815 11 6 4.0756 2.8858 -0.1252 12 1 5.1619 2.8870 -0.2147 13 7 3.4920 3.6106 -1.2567 14 6 2.6768 4.6880 -1.0326 15 1 2.7956 5.2777 -0.1357 16 6 1.6979 5.0219 -1.9583 17 7 1.4497 4.2199 -2.9720 18 14 0.7327 6.6095 -1.7654 19 1 1.1990 7.3280 -0.5522 20 1 0.9440 7.4656 -2.9602 21 1 -0.7127 6.2968 -1.6298 22 6 3.7805 3.1831 -2.6278 23 6 2.8807 2.0782 -2.9968 24 7 2.1856 1.2251 -3.2815 25 6 3.5650 1.4435 -0.1254 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5140 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5491 2.1253 1.3968 32 1 2.0699 1.5874 2.1491 33 1 1.8573 4.0562 2.2387 34 1 1.7118 4.1081 0.4656 35 1 0.7653 4.4531 -3.6187 36 1 3.6269 4.0197 -3.3093 37 1 4.8151 2.8463 -2.6933 38 1 3.8529 0.9563 -1.0569 39 1 3.9991 0.9043 0.7165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037145982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:10 Heat of formation + Delta-G solvation = 61.452133 kcal Electronic energy + Delta-G solvation = -21226.463400 eV Core-core repulsion = 18362.484766 eV Total energy + Delta-G solvation = -2863.978634 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.93488 -37.31879 -37.05159 -35.85642 -34.24939 -33.06370 -30.80137 -30.11895 -28.32330 -25.70525 -24.53829 -22.91819 -21.56504 -20.23090 -19.15600 -18.74322 -17.64360 -16.71091 -15.94462 -15.51228 -15.40586 -15.17284 -14.62923 -14.50673 -14.42161 -13.97068 -13.77540 -13.68793 -13.46230 -13.11392 -12.96593 -12.88747 -12.71529 -12.69939 -12.54512 -12.31930 -12.19925 -12.00375 -11.81858 -11.75459 -11.53153 -11.19505 -10.99328 -10.90530 -10.53729 -10.22526 -8.68588 -7.85570 -5.26725 1.40230 1.49384 1.52256 2.08936 2.15573 2.42456 2.63137 2.81900 3.30296 3.36916 3.76707 4.00904 4.11670 4.16386 4.27798 4.35937 4.47705 4.66541 4.67492 4.78792 4.89356 4.89793 4.96674 5.07591 5.09616 5.14266 5.24450 5.29769 5.32300 5.40145 5.42062 5.51296 5.62070 5.72281 5.81355 5.96351 6.11428 6.37130 6.94216 7.15462 7.59063 7.83664 8.26783 9.18586 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.011298 C = 0.009266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.070823 B = 2477.725453 C = 3020.967361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C -0.085 4.085 4 H 0.054 0.946 5 C -0.092 4.092 6 C -0.142 4.142 7 C 0.020 3.980 8 H 0.151 0.849 9 C 0.256 3.744 10 N -0.510 5.510 11 C 0.174 3.826 12 H 0.073 0.927 13 N -0.586 5.586 14 C -0.229 4.229 15 H 0.088 0.912 16 C -0.027 4.027 17 N -0.916 5.916 18 Si 0.929 3.071 19 H -0.280 1.280 20 H -0.298 1.298 21 H -0.300 1.300 22 C 0.260 3.740 23 C 0.267 3.733 24 N -0.539 5.539 25 C -0.119 4.119 26 H 0.063 0.937 27 H 0.018 0.982 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.245 0.755 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.045 0.955 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 -7.153 9.234 12.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.104 4.104 4 H 0.072 0.928 5 C -0.129 4.129 6 C -0.180 4.180 7 C -0.001 4.001 8 H 0.168 0.832 9 C -0.059 4.059 10 N -0.187 5.187 11 C 0.067 3.933 12 H 0.091 0.909 13 N -0.309 5.309 14 C -0.359 4.359 15 H 0.105 0.895 16 C -0.224 4.224 17 N -0.562 5.562 18 Si 0.761 3.239 19 H -0.205 1.205 20 H -0.225 1.225 21 H -0.227 1.227 22 C 0.131 3.869 23 C -0.050 4.050 24 N -0.222 5.222 25 C -0.159 4.159 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.055 0.945 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.363 -6.723 8.736 11.855 hybrid contribution -1.242 1.173 -0.652 1.828 sum 3.121 -5.550 8.084 10.290 Atomic orbital electron populations 1.21718 0.96918 1.00906 1.00602 1.21445 0.95185 0.96995 1.00865 1.21052 0.95952 0.94756 0.98597 0.92774 1.21394 0.99835 0.94404 0.97269 1.22203 0.92828 0.99166 1.03827 1.19222 0.97336 0.82806 1.00730 0.83175 1.29300 0.91263 0.95211 0.90144 1.81150 1.11886 1.13686 1.11983 1.20819 0.96769 0.90525 0.85154 0.90939 1.44109 1.55286 1.31767 0.99692 1.19415 1.07946 1.02656 1.05900 0.89469 1.25305 0.98692 0.99190 0.99182 1.69811 1.34528 1.36256 1.15592 0.85781 0.78857 0.82263 0.77040 1.20509 1.22491 1.22748 1.18234 0.91600 0.89762 0.87330 1.30626 0.92570 0.91502 0.90351 1.80846 1.12307 1.17469 1.11532 1.22030 0.95442 0.96684 1.01719 0.91786 0.96287 0.92419 0.94691 0.90354 0.93179 0.89894 0.91847 0.88889 0.94510 0.89405 0.88843 0.93642 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 9.67 71.98 0.70 -3.58 16 2 C -0.11 -3.11 5.40 30.59 0.17 -2.94 16 3 C -0.08 -2.64 1.76 -10.79 -0.02 -2.66 16 4 H 0.05 2.30 6.01 -2.39 -0.01 2.28 16 5 C -0.09 -2.44 4.96 30.59 0.15 -2.29 16 6 C -0.14 -4.21 4.76 30.59 0.15 -4.06 16 7 C 0.02 0.54 2.34 -12.60 -0.03 0.51 16 8 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 9 C 0.26 8.54 11.43 89.44 1.02 9.56 16 10 N -0.51 -19.95 18.38 20.01 0.37 -19.59 16 11 C 0.17 4.97 2.71 44.99 0.12 5.09 16 12 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 13 N -0.59 -22.10 1.93 -688.52 -1.33 -23.43 16 14 C -0.23 -10.03 5.63 84.03 0.47 -9.55 16 15 H 0.09 3.87 3.55 -2.91 -0.01 3.86 16 16 C -0.03 -1.33 5.12 84.86 0.43 -0.89 16 17 N -0.92 -47.18 9.18 21.65 0.20 -46.98 16 18 Si 0.93 42.90 29.56 68.60 2.03 44.93 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 22 C 0.26 9.91 5.26 84.57 0.45 10.35 16 23 C 0.27 11.38 9.60 89.43 0.86 12.24 16 24 N -0.54 -25.03 18.38 20.01 0.37 -24.66 16 25 C -0.12 -3.21 4.18 30.60 0.13 -3.08 16 26 H 0.06 1.71 6.56 -2.39 -0.02 1.69 16 27 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.05 1.41 6.56 -2.39 -0.02 1.40 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 3.66 4.30 -2.38 -0.01 3.65 16 35 H 0.24 13.12 8.31 -92.70 -0.77 12.35 16 36 H 0.09 3.80 6.68 -2.39 -0.02 3.79 16 37 H 0.09 2.79 8.12 -2.38 -0.02 2.77 16 38 H 0.04 1.37 6.53 -2.39 -0.02 1.36 16 39 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -59.98 301.46 7.28 -52.70 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 1.06 Total: 8.35 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 4.59 Total: 8.69 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -0.40 Total: -114.67 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -59.98 7.28 -52.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037145982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.153 kcal (2) G-P(sol) polarization free energy of solvation -59.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds