Wall clock time and date at job start Mon Mar 30 2020 07:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46866 * 2 1 4 4 H 1.09000 * 109.47615 * 54.99669 * 3 2 1 5 5 C 1.53001 * 109.47526 * 294.99428 * 3 2 1 6 6 C 1.52996 * 109.47526 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46793 * 60.00038 * 6 5 3 8 8 H 1.09007 * 109.47116 * 60.00393 * 7 6 5 9 9 C 1.47206 * 109.46955 * 179.97438 * 7 6 5 10 10 N 6.84179 * 116.09394 * 348.91299 * 2 1 3 11 11 C 1.52993 * 109.47427 * 299.99794 * 7 6 5 12 12 H 1.08994 * 109.47655 * 300.00155 * 11 7 6 13 13 N 1.46497 * 109.47338 * 180.02562 * 11 7 6 14 14 C 1.36941 * 120.00357 * 300.00069 * 13 11 7 15 15 H 1.08005 * 119.99269 * 17.20505 * 14 13 11 16 16 C 1.38809 * 120.00595 * 197.20540 * 14 13 11 17 17 N 1.31625 * 119.99641 * 22.04157 * 16 14 13 18 18 Si 1.86795 * 120.00376 * 202.03688 * 16 14 13 19 19 H 1.48503 * 109.46984 * 90.00026 * 18 16 14 20 20 H 1.48493 * 109.47450 * 210.00095 * 18 16 14 21 21 H 1.48509 * 109.47005 * 330.00360 * 18 16 14 22 22 C 1.46500 * 120.00192 * 120.00344 * 13 11 7 23 23 C 1.47202 * 109.47474 * 84.21166 * 22 13 11 24 24 N 6.12806 * 140.07375 * 60.54338 * 2 1 3 25 25 C 1.53000 * 109.47300 * 60.00324 * 11 7 6 26 26 H 1.09007 * 109.47082 * 60.00612 * 1 2 3 27 27 H 1.09002 * 109.47419 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47613 * 300.00216 * 1 2 3 29 29 H 1.08996 * 109.47613 * 239.99784 * 2 1 3 30 30 H 1.09006 * 109.46561 * 119.99423 * 2 1 3 31 31 H 1.09000 * 109.46870 * 300.00697 * 5 3 2 32 32 H 1.08999 * 109.46630 * 60.00090 * 5 3 2 33 33 H 1.08997 * 109.47106 * 180.02562 * 6 5 3 34 34 H 1.08994 * 109.47061 * 300.00635 * 6 5 3 35 35 H 0.96997 * 119.99640 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.46926 * 204.21759 * 22 13 11 37 37 H 1.08998 * 109.47184 * 324.21021 * 22 13 11 38 38 H 1.08997 * 109.47440 * 180.02562 * 25 11 7 39 39 H 1.09002 * 109.47162 * 59.99326 * 25 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 2.1446 3.5692 -1.3071 7 6 3.6694 3.5716 -1.1809 8 1 4.1045 3.0328 -2.0228 9 6 4.1596 4.9597 -1.1813 10 7 4.5393 6.0298 -1.1816 11 6 4.0741 2.8877 0.1264 12 1 3.6391 3.4264 0.9681 13 7 5.5341 2.8905 0.2475 14 6 6.3011 2.2696 -0.7019 15 1 5.8758 2.0243 -1.6639 16 6 7.6251 1.9553 -0.4279 17 7 8.0296 1.8402 0.8194 18 14 8.8328 1.6957 -1.8291 19 1 9.4717 2.9900 -2.1781 20 1 9.8762 0.7258 -1.4101 21 1 8.1104 1.1650 -3.0132 22 6 6.1736 3.5576 1.3842 23 6 6.2044 2.6422 2.5366 24 7 6.2294 1.9341 3.4246 25 6 3.5648 1.4450 0.1262 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 2.0699 1.5874 -2.1491 32 1 0.5490 2.1252 -1.3970 33 1 1.8559 4.0566 -2.2383 34 1 1.7096 4.1079 -0.4654 35 1 8.9547 1.6203 1.0108 36 1 7.1920 3.8376 1.1152 37 1 5.6081 4.4520 1.6458 38 1 3.8527 0.9578 1.0578 39 1 3.9998 0.9062 -0.7156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037145983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:13 Heat of formation + Delta-G solvation = 50.135775 kcal Electronic energy + Delta-G solvation = -20188.978963 eV Core-core repulsion = 17324.509615 eV Total energy + Delta-G solvation = -2864.469348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.27359 -36.21071 -35.77163 -34.34929 -33.22275 -31.45654 -29.62200 -28.87276 -26.67779 -24.39922 -23.16768 -21.92527 -20.24666 -19.65650 -17.67599 -16.82148 -15.88485 -15.48909 -14.82289 -14.34046 -14.13686 -13.78789 -13.65962 -13.39035 -13.24610 -12.88221 -12.46518 -12.20073 -12.03854 -11.92610 -11.81083 -11.42183 -11.32320 -11.21042 -11.04248 -10.98268 -10.83416 -10.71852 -10.55542 -10.36990 -10.24825 -10.16586 -9.91695 -9.79542 -9.56804 -8.73138 -7.24019 -6.00763 -3.39748 3.31059 3.38018 3.39859 3.40739 3.41704 4.04151 4.34509 4.44570 4.47716 4.90955 4.92587 5.04278 5.19814 5.28247 5.38629 5.45096 5.52711 5.59146 5.64249 5.73294 5.78195 5.84883 5.89341 5.99351 6.03991 6.13114 6.17419 6.29039 6.38887 6.41874 6.45682 6.50078 6.58527 6.84552 6.99173 7.00621 7.60401 8.07916 8.20538 8.90053 9.16510 9.56954 10.00113 11.07679 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.007497 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.565495 B = 3734.014922 C = 4032.638349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.090 4.090 4 H 0.066 0.934 5 C -0.111 4.111 6 C -0.107 4.107 7 C -0.007 4.007 8 H 0.115 0.885 9 C 0.239 3.761 10 N -0.462 5.462 11 C 0.184 3.816 12 H 0.063 0.937 13 N -0.578 5.578 14 C -0.265 4.265 15 H 0.082 0.918 16 C 0.009 3.991 17 N -0.897 5.897 18 Si 0.903 3.097 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.278 1.278 22 C 0.259 3.741 23 C 0.250 3.750 24 N -0.506 5.506 25 C -0.115 4.115 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.260 0.740 36 H 0.113 0.887 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.403 0.164 -4.661 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.109 4.109 4 H 0.085 0.915 5 C -0.148 4.148 6 C -0.147 4.147 7 C -0.031 4.031 8 H 0.132 0.868 9 C -0.079 4.079 10 N -0.139 5.139 11 C 0.075 3.925 12 H 0.081 0.919 13 N -0.297 5.297 14 C -0.393 4.393 15 H 0.100 0.900 16 C -0.190 4.190 17 N -0.540 5.540 18 Si 0.733 3.267 19 H -0.213 1.213 20 H -0.219 1.219 21 H -0.203 1.203 22 C 0.129 3.871 23 C -0.069 4.069 24 N -0.187 5.187 25 C -0.155 4.155 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.130 0.870 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.585 0.700 -3.309 13.031 hybrid contribution 0.854 -0.597 -1.036 1.469 sum -11.731 0.103 -4.345 12.510 Atomic orbital electron populations 1.21827 0.96501 1.01016 1.01613 1.21547 0.95115 0.96902 1.02097 1.21269 0.96761 0.95374 0.97501 0.91542 1.21603 1.00241 0.94745 0.98209 1.21518 0.93094 0.97776 1.02279 1.19527 0.94986 0.84560 1.04000 0.86765 1.28964 0.92235 0.94359 0.92319 1.81059 1.09580 1.13611 1.09606 1.20344 0.84943 0.94283 0.92969 0.91870 1.44168 0.99416 1.62074 1.24046 1.19119 0.92335 1.34877 0.93018 0.89981 1.24862 0.98684 0.99422 0.96063 1.69918 1.16944 1.50399 1.16756 0.86277 0.81163 0.77559 0.81706 1.21291 1.21918 1.20341 1.18283 1.00622 0.87876 0.80317 1.30468 0.90017 0.93830 0.92604 1.80814 1.12045 1.10765 1.15092 1.21974 0.92437 0.97817 1.03222 0.92632 0.93376 0.93022 0.92002 0.92140 0.91515 0.91780 0.91596 0.91495 0.92994 0.86973 0.92755 0.91820 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.67 37.16 0.36 -1.04 16 2 C -0.12 -1.31 5.40 -26.74 -0.14 -1.46 16 3 C -0.09 -1.05 2.19 -90.62 -0.20 -1.25 16 4 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.11 -1.10 4.96 -26.73 -0.13 -1.23 16 6 C -0.11 -1.15 5.16 -26.73 -0.14 -1.28 16 7 C -0.01 -0.10 1.93 -93.41 -0.18 -0.28 16 8 H 0.11 1.64 7.02 -51.93 -0.36 1.28 16 9 C 0.24 3.96 14.23 -20.78 -0.30 3.67 16 10 N -0.46 -8.69 18.53 42.13 0.78 -7.91 16 11 C 0.18 2.98 2.04 -67.94 -0.14 2.85 16 12 H 0.06 0.99 7.87 -51.93 -0.41 0.58 16 13 N -0.58 -11.81 1.99 -168.98 -0.34 -12.15 16 14 C -0.27 -6.04 8.38 -15.06 -0.13 -6.17 16 15 H 0.08 1.80 6.89 -52.48 -0.36 1.44 16 16 C 0.01 0.23 4.85 -17.43 -0.08 0.14 16 17 N -0.90 -23.67 9.50 55.49 0.53 -23.15 16 18 Si 0.90 20.18 29.61 -169.99 -5.03 15.15 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 C 0.26 5.44 5.35 -6.83 -0.04 5.40 16 23 C 0.25 5.81 13.67 -20.76 -0.28 5.52 16 24 N -0.51 -12.67 18.54 42.15 0.78 -11.89 16 25 C -0.12 -1.77 4.46 -26.73 -0.12 -1.89 16 26 H 0.05 0.46 6.57 -51.93 -0.34 0.12 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.11 2.59 6.44 -51.93 -0.33 2.26 16 37 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.21 7.64 -51.93 -0.40 0.82 16 LS Contribution 320.39 15.07 4.83 4.83 Total: -1.00 -28.19 320.39 -5.88 -34.07 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.91 Total: -1.92 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -1.52 Total: 2.97 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 1.75 Total: -55.09 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.19 -5.88 -34.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037145983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.203 kcal (2) G-P(sol) polarization free energy of solvation -28.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds