Wall clock time and date at job start Mon Mar 30 2020 07:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46866 * 2 1 4 4 H 1.09000 * 109.47615 * 54.99669 * 3 2 1 5 5 C 1.53001 * 109.47526 * 294.99428 * 3 2 1 6 6 C 1.52996 * 109.47526 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46793 * 60.00038 * 6 5 3 8 8 H 1.09007 * 109.47116 * 60.00393 * 7 6 5 9 9 C 1.47206 * 109.46955 * 179.97438 * 7 6 5 10 10 N 6.84179 * 116.09394 * 348.91299 * 2 1 3 11 11 C 1.52993 * 109.47427 * 299.99794 * 7 6 5 12 12 H 1.08994 * 109.47655 * 300.00155 * 11 7 6 13 13 N 1.46497 * 109.47338 * 180.02562 * 11 7 6 14 14 C 1.36941 * 120.00357 * 300.00069 * 13 11 7 15 15 H 1.08005 * 119.99269 * 17.20505 * 14 13 11 16 16 C 1.38809 * 120.00595 * 197.20540 * 14 13 11 17 17 N 1.31625 * 119.99641 * 22.04157 * 16 14 13 18 18 Si 1.86795 * 120.00376 * 202.03688 * 16 14 13 19 19 H 1.48503 * 109.46984 * 90.00026 * 18 16 14 20 20 H 1.48493 * 109.47450 * 210.00095 * 18 16 14 21 21 H 1.48509 * 109.47005 * 330.00360 * 18 16 14 22 22 C 1.46500 * 120.00192 * 120.00344 * 13 11 7 23 23 C 1.47202 * 109.47474 * 84.21166 * 22 13 11 24 24 N 6.12806 * 140.07375 * 60.54338 * 2 1 3 25 25 C 1.53000 * 109.47300 * 60.00324 * 11 7 6 26 26 H 1.09007 * 109.47082 * 60.00612 * 1 2 3 27 27 H 1.09002 * 109.47419 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47613 * 300.00216 * 1 2 3 29 29 H 1.08996 * 109.47613 * 239.99784 * 2 1 3 30 30 H 1.09006 * 109.46561 * 119.99423 * 2 1 3 31 31 H 1.09000 * 109.46870 * 300.00697 * 5 3 2 32 32 H 1.08999 * 109.46630 * 60.00090 * 5 3 2 33 33 H 1.08997 * 109.47106 * 180.02562 * 6 5 3 34 34 H 1.08994 * 109.47061 * 300.00635 * 6 5 3 35 35 H 0.96997 * 119.99640 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.46926 * 204.21759 * 22 13 11 37 37 H 1.08998 * 109.47184 * 324.21021 * 22 13 11 38 38 H 1.08997 * 109.47440 * 180.02562 * 25 11 7 39 39 H 1.09002 * 109.47162 * 59.99326 * 25 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 2.1446 3.5692 -1.3071 7 6 3.6694 3.5716 -1.1809 8 1 4.1045 3.0328 -2.0228 9 6 4.1596 4.9597 -1.1813 10 7 4.5393 6.0298 -1.1816 11 6 4.0741 2.8877 0.1264 12 1 3.6391 3.4264 0.9681 13 7 5.5341 2.8905 0.2475 14 6 6.3011 2.2696 -0.7019 15 1 5.8758 2.0243 -1.6639 16 6 7.6251 1.9553 -0.4279 17 7 8.0296 1.8402 0.8194 18 14 8.8328 1.6957 -1.8291 19 1 9.4717 2.9900 -2.1781 20 1 9.8762 0.7258 -1.4101 21 1 8.1104 1.1650 -3.0132 22 6 6.1736 3.5576 1.3842 23 6 6.2044 2.6422 2.5366 24 7 6.2294 1.9341 3.4246 25 6 3.5648 1.4450 0.1262 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 2.0699 1.5874 -2.1491 32 1 0.5490 2.1252 -1.3970 33 1 1.8559 4.0566 -2.2383 34 1 1.7096 4.1079 -0.4654 35 1 8.9547 1.6203 1.0108 36 1 7.1920 3.8376 1.1152 37 1 5.6081 4.4520 1.6458 38 1 3.8527 0.9578 1.0578 39 1 3.9998 0.9062 -0.7156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037145983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:13 Heat of formation + Delta-G solvation = 36.558076 kcal Electronic energy + Delta-G solvation = -20189.567737 eV Core-core repulsion = 17324.509615 eV Total energy + Delta-G solvation = -2865.058121 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47289 -37.70833 -37.16502 -36.09939 -34.43087 -33.03151 -30.87052 -29.99383 -28.41016 -25.69819 -24.42779 -22.96108 -21.57629 -20.69104 -19.21937 -18.32279 -17.49402 -17.09719 -15.98154 -15.65920 -15.59505 -15.12556 -14.81680 -14.60161 -14.40300 -14.18225 -13.92477 -13.64002 -13.50178 -13.19111 -13.12957 -13.03297 -12.80426 -12.75843 -12.30977 -12.28691 -12.22841 -11.99289 -11.97489 -11.74607 -11.67795 -11.37845 -11.09963 -11.08039 -10.78224 -10.50748 -8.98735 -7.89151 -5.25526 1.51562 1.56666 1.61074 2.06244 2.11064 2.26865 2.49673 2.61340 3.25381 3.32868 3.55082 3.86117 3.97539 4.13164 4.26913 4.33676 4.43619 4.49268 4.60699 4.70362 4.75475 4.82847 4.91070 4.93295 5.05690 5.18569 5.22446 5.23415 5.32372 5.35000 5.43334 5.46239 5.50191 5.61011 5.71759 5.75752 5.82832 6.28128 6.90119 7.06629 7.31111 7.80027 8.20392 9.18057 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.007497 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.565495 B = 3734.014922 C = 4032.638349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.083 4.083 4 H 0.072 0.928 5 C -0.104 4.104 6 C -0.100 4.100 7 C 0.001 3.999 8 H 0.117 0.883 9 C 0.253 3.747 10 N -0.501 5.501 11 C 0.178 3.822 12 H 0.072 0.928 13 N -0.587 5.587 14 C -0.243 4.243 15 H 0.096 0.904 16 C -0.043 4.043 17 N -0.930 5.930 18 Si 0.952 3.048 19 H -0.293 1.293 20 H -0.312 1.312 21 H -0.264 1.264 22 C 0.260 3.740 23 C 0.262 3.738 24 N -0.543 5.543 25 C -0.104 4.104 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.246 0.754 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.026 0.974 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.163 0.589 -6.372 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.102 4.102 4 H 0.090 0.910 5 C -0.141 4.141 6 C -0.139 4.139 7 C -0.022 4.022 8 H 0.134 0.866 9 C -0.063 4.063 10 N -0.178 5.178 11 C 0.071 3.929 12 H 0.090 0.910 13 N -0.306 5.306 14 C -0.372 4.372 15 H 0.113 0.887 16 C -0.239 4.239 17 N -0.576 5.576 18 Si 0.782 3.218 19 H -0.221 1.221 20 H -0.240 1.240 21 H -0.188 1.188 22 C 0.130 3.870 23 C -0.056 4.056 24 N -0.225 5.225 25 C -0.144 4.144 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.045 0.955 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.395 1.130 -5.057 16.244 hybrid contribution 1.648 -0.734 -0.505 1.874 sum -13.747 0.396 -5.562 14.834 Atomic orbital electron populations 1.21791 0.94569 1.01670 1.02461 1.21526 0.96755 0.96179 1.01219 1.21212 0.93529 0.96295 0.99145 0.90988 1.21589 1.01897 0.93826 0.96825 1.21543 0.89832 0.98655 1.03912 1.19574 0.97707 0.82685 1.02223 0.86574 1.29390 0.91177 0.94554 0.91200 1.81087 1.10932 1.15022 1.10768 1.20608 0.82352 0.95209 0.94743 0.90955 1.44400 1.01289 1.61679 1.23271 1.19462 0.92078 1.31931 0.93725 0.88683 1.25385 1.00278 1.01075 0.97118 1.70048 1.16059 1.53360 1.18148 0.85487 0.79398 0.76458 0.80426 1.22091 1.23953 1.18809 1.18376 1.00287 0.88477 0.79854 1.31004 0.88875 0.93359 0.92370 1.80802 1.13311 1.12013 1.16380 1.21819 0.95499 0.96404 1.00664 0.91070 0.92956 0.92809 0.92053 0.94019 0.91114 0.89083 0.89441 0.90523 0.94467 0.89005 0.89531 0.95463 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.67 71.98 0.70 -1.54 16 2 C -0.12 -2.38 5.40 30.59 0.17 -2.21 16 3 C -0.08 -1.71 2.19 -10.79 -0.02 -1.73 16 4 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 5 C -0.10 -1.61 4.96 30.59 0.15 -1.46 16 6 C -0.10 -1.69 5.16 30.59 0.16 -1.53 16 7 C 0.00 0.04 1.93 -12.60 -0.02 0.01 16 8 H 0.12 2.96 7.02 -2.38 -0.02 2.94 16 9 C 0.25 7.78 14.23 89.45 1.27 9.06 16 10 N -0.50 -17.93 18.53 20.00 0.37 -17.56 16 11 C 0.18 5.46 2.04 44.99 0.09 5.55 16 12 H 0.07 2.10 7.87 -2.39 -0.02 2.09 16 13 N -0.59 -23.48 1.99 -688.53 -1.37 -24.85 16 14 C -0.24 -10.85 8.38 84.03 0.70 -10.15 16 15 H 0.10 3.97 6.89 -2.91 -0.02 3.95 16 16 C -0.04 -2.14 4.85 84.86 0.41 -1.73 16 17 N -0.93 -50.30 9.50 21.65 0.21 -50.09 16 18 Si 0.95 41.81 29.61 68.60 2.03 43.84 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.31 -14.57 7.11 99.48 0.71 -13.87 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 22 C 0.26 10.88 5.35 84.57 0.45 11.33 16 23 C 0.26 12.33 13.67 89.44 1.22 13.55 16 24 N -0.54 -27.70 18.54 20.01 0.37 -27.33 16 25 C -0.10 -3.10 4.46 30.60 0.14 -2.96 16 26 H 0.07 0.87 6.57 -2.38 -0.02 0.85 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.04 0.97 8.14 -2.38 -0.02 0.96 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.03 6.56 -2.39 -0.02 1.02 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 36 H 0.09 4.30 6.44 -2.39 -0.02 4.29 16 37 H 0.09 3.04 8.04 -2.39 -0.02 3.03 16 38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.92 7.64 -2.39 -0.02 1.90 16 Total: -1.00 -61.80 320.39 8.06 -53.74 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.04 Total: 6.07 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 5.41 Total: 16.18 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -0.42 Total: -119.83 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -61.80 8.06 -53.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037145983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.300 kcal (2) G-P(sol) polarization free energy of solvation -61.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds