Wall clock time and date at job start Mon Mar 30 2020 07:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 H 1.09005 * 109.47275 * 305.00267 * 3 2 1 5 5 C 1.53007 * 109.47370 * 64.99989 * 3 2 1 6 6 C 1.52998 * 109.47353 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.46683 * 299.99648 * 6 5 3 8 8 H 1.08997 * 109.46597 * 180.02562 * 7 6 5 9 9 C 1.47194 * 109.47175 * 300.00210 * 7 6 5 10 10 N 5.05264 * 129.00318 * 54.48010 * 2 1 3 11 11 C 1.52998 * 109.47029 * 60.00246 * 7 6 5 12 12 H 1.09003 * 109.46979 * 179.97438 * 11 7 6 13 13 N 1.46505 * 109.47250 * 59.99630 * 11 7 6 14 14 C 1.36936 * 120.00183 * 239.30178 * 13 11 7 15 15 H 1.07995 * 119.99910 * 325.92836 * 14 13 11 16 16 C 1.38816 * 119.99719 * 146.20971 * 14 13 11 17 17 N 1.31614 * 120.00225 * 4.67407 * 16 14 13 18 18 Si 1.86801 * 119.99311 * 184.68059 * 16 14 13 19 19 H 1.48495 * 109.47603 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47258 * 119.99960 * 18 16 14 21 21 H 1.48506 * 109.46825 * 239.99252 * 18 16 14 22 22 C 1.46504 * 119.99801 * 59.30084 * 13 11 7 23 23 C 1.47209 * 109.46958 * 276.28117 * 22 13 11 24 24 N 6.54324 * 96.42131 * 0.16514 * 2 1 3 25 25 C 1.52997 * 109.47424 * 184.99809 * 3 2 1 26 26 H 1.09002 * 109.47065 * 300.00092 * 1 2 3 27 27 H 1.08999 * 109.47571 * 59.99701 * 1 2 3 28 28 H 1.09003 * 109.47483 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47065 * 239.99908 * 2 1 3 30 30 H 1.09006 * 109.47100 * 119.99833 * 2 1 3 31 31 H 1.08997 * 109.46845 * 59.99686 * 5 3 2 32 32 H 1.09003 * 109.46888 * 300.00343 * 5 3 2 33 33 H 1.08994 * 109.46849 * 179.97438 * 6 5 3 34 34 H 1.08998 * 109.47305 * 59.99499 * 6 5 3 35 35 H 0.97005 * 120.00031 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.47296 * 36.27645 * 22 13 11 37 37 H 1.08991 * 109.47267 * 156.28205 * 22 13 11 38 38 H 1.09003 * 109.46828 * 60.00024 * 25 3 2 39 39 H 1.08997 * 109.47000 * 300.00442 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 2.1447 3.5693 1.3071 7 6 3.6696 3.5715 1.1812 8 1 4.0326 4.5993 1.1814 9 6 4.2569 2.8439 2.3179 10 7 4.7099 2.2812 3.1958 11 6 4.0743 2.8875 -0.1262 12 1 5.1606 2.8895 -0.2161 13 7 3.4897 3.6116 -1.2576 14 6 2.6415 2.9674 -2.1183 15 1 2.7947 1.9231 -2.3467 16 6 1.5882 3.6583 -2.7016 17 7 1.4585 4.9525 -2.5007 18 14 0.3549 2.7508 -3.7716 19 1 0.7214 1.3134 -3.8393 20 1 -1.0033 2.8889 -3.1873 21 1 0.3664 3.3292 -5.1394 22 6 3.8126 5.0250 -1.4683 23 6 2.9363 5.8588 -0.6292 24 7 2.2618 6.5022 0.0187 25 6 3.5648 1.4443 -0.1257 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0698 1.5875 2.1492 32 1 0.5489 2.1253 1.3970 33 1 1.8560 4.0567 2.2383 34 1 1.7098 4.1080 0.4653 35 1 0.7223 5.4352 -2.9080 36 1 4.8530 5.2044 -1.1973 37 1 3.6612 5.2799 -2.5171 38 1 3.8532 0.9570 -1.0571 39 1 3.9994 0.9053 0.7161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037145984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:15 Heat of formation + Delta-G solvation = 64.376929 kcal Electronic energy + Delta-G solvation = -21169.416942 eV Core-core repulsion = 18305.565136 eV Total energy + Delta-G solvation = -2863.851805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.59478 -36.00108 -35.55774 -34.20887 -33.13982 -31.30382 -29.77965 -28.65840 -26.65394 -24.34519 -22.88124 -21.94992 -20.15898 -19.50179 -17.27199 -16.40991 -15.76862 -15.67594 -15.10000 -14.15348 -14.05800 -13.73969 -13.62873 -13.06503 -12.82860 -12.58067 -12.53659 -12.16519 -11.99675 -11.78781 -11.63208 -11.39964 -11.35602 -11.12804 -11.09184 -10.85161 -10.72702 -10.54417 -10.36138 -10.29406 -10.09934 -9.99171 -9.75480 -9.38779 -9.31367 -8.51792 -7.06400 -6.12128 -3.61343 3.17435 3.21997 3.24545 3.32615 3.34462 4.00033 4.28831 4.42877 4.51166 5.09653 5.25719 5.29087 5.33145 5.48395 5.57051 5.65477 5.68293 5.76791 5.90389 6.04814 6.09939 6.18352 6.20255 6.26004 6.33365 6.44975 6.48479 6.53073 6.58065 6.62424 6.81686 6.90923 7.00808 7.01219 7.07257 7.51145 7.64574 7.99499 8.12184 8.86900 9.15483 9.43793 9.96250 10.94787 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.011925 C = 0.008205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.042390 B = 2347.474885 C = 3411.601265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.114 4.114 4 H 0.139 0.861 5 C -0.106 4.106 6 C -0.103 4.103 7 C -0.019 4.019 8 H 0.100 0.900 9 C 0.232 3.768 10 N -0.468 5.468 11 C 0.184 3.816 12 H 0.048 0.952 13 N -0.573 5.573 14 C -0.257 4.257 15 H 0.084 0.916 16 C 0.019 3.981 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.288 1.288 22 C 0.255 3.745 23 C 0.251 3.749 24 N -0.508 5.508 25 C -0.099 4.099 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.109 0.891 35 H 0.263 0.737 36 H 0.054 0.946 37 H 0.116 0.884 38 H 0.070 0.930 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 -4.781 0.485 5.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.131 4.131 4 H 0.156 0.844 5 C -0.144 4.144 6 C -0.142 4.142 7 C -0.043 4.043 8 H 0.117 0.883 9 C -0.085 4.085 10 N -0.145 5.145 11 C 0.076 3.924 12 H 0.066 0.934 13 N -0.294 5.294 14 C -0.385 4.385 15 H 0.102 0.898 16 C -0.181 4.181 17 N -0.537 5.537 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.213 1.213 21 H -0.215 1.215 22 C 0.126 3.874 23 C -0.067 4.067 24 N -0.189 5.189 25 C -0.136 4.136 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.127 0.873 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.260 -4.590 2.659 5.766 hybrid contribution -0.918 -0.354 -0.977 1.387 sum 1.342 -4.944 1.681 5.392 Atomic orbital electron populations 1.21795 0.96740 1.00339 1.01940 1.21533 0.95283 0.97926 1.00565 1.21908 0.95475 0.94946 1.00784 0.84359 1.21547 0.99977 0.95325 0.97526 1.21525 0.91728 0.97870 1.03060 1.19835 0.96937 0.98348 0.89207 0.88266 1.29496 0.92294 0.92875 0.93842 1.81136 1.10672 1.10883 1.11853 1.20574 0.95788 0.91872 0.84208 0.93446 1.43931 1.54131 1.05734 1.25642 1.19094 1.04331 0.96182 1.18929 0.89837 1.25278 0.97240 0.95893 0.99688 1.69643 1.31974 1.06340 1.45724 0.86332 0.81753 0.79756 0.79833 1.19640 1.21298 1.21459 1.18243 0.90163 0.81129 0.97854 1.30292 0.93025 0.92039 0.91323 1.80837 1.11615 1.12107 1.14374 1.21536 0.96430 0.95009 1.00666 0.92914 0.92662 0.93879 0.92494 0.93617 0.94167 0.92470 0.93503 0.87316 0.92648 0.92782 0.86674 0.91177 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.67 37.16 0.36 -1.85 16 2 C -0.12 -1.76 5.40 -26.73 -0.14 -1.90 16 3 C -0.11 -1.92 1.66 -90.62 -0.15 -2.07 16 4 H 0.14 2.73 4.39 -51.93 -0.23 2.50 16 5 C -0.11 -1.81 4.74 -26.73 -0.13 -1.94 16 6 C -0.10 -1.87 4.90 -26.73 -0.13 -2.00 16 7 C -0.02 -0.32 2.04 -93.41 -0.19 -0.51 16 8 H 0.10 1.64 6.60 -51.93 -0.34 1.30 16 9 C 0.23 3.97 12.16 -20.73 -0.25 3.72 16 10 N -0.47 -8.67 18.54 42.19 0.78 -7.89 16 11 C 0.18 3.04 2.80 -67.91 -0.19 2.85 16 12 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 13 N -0.57 -10.66 2.02 -168.94 -0.34 -11.00 16 14 C -0.26 -5.27 5.79 -15.06 -0.09 -5.36 16 15 H 0.08 1.71 5.93 -52.49 -0.31 1.40 16 16 C 0.02 0.43 5.12 -17.43 -0.09 0.34 16 17 N -0.89 -21.12 9.01 55.49 0.50 -20.62 16 18 Si 0.89 18.58 29.52 -169.99 -5.02 13.56 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 20 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.26 4.64 5.18 -6.82 -0.04 4.60 16 23 C 0.25 5.14 9.35 -20.78 -0.19 4.94 16 24 N -0.51 -11.35 18.12 42.13 0.76 -10.59 16 25 C -0.10 -1.60 3.98 -26.71 -0.11 -1.71 16 26 H 0.05 0.75 6.57 -51.93 -0.34 0.41 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.68 7.23 -51.93 -0.38 0.30 16 32 H 0.06 0.96 6.57 -51.93 -0.34 0.62 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.11 2.31 5.54 -51.93 -0.29 2.02 16 35 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 36 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 37 H 0.12 2.27 6.83 -51.93 -0.35 1.91 16 38 H 0.07 1.13 7.07 -51.93 -0.37 0.76 16 39 H 0.04 0.72 7.23 -51.93 -0.38 0.34 16 LS Contribution 300.55 15.07 4.53 4.53 Total: -1.00 -24.12 300.55 -5.54 -29.66 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.42 Total: 3.22 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.34 Total: -0.87 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 1.70 Total: -50.09 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -24.12 -5.54 -29.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037145984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.033 kcal (2) G-P(sol) polarization free energy of solvation -24.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds