Wall clock time and date at job start Mon Mar 30 2020 06:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47096 * 2 1 4 4 O 1.42903 * 109.47092 * 120.00023 * 2 1 3 5 5 C 1.50695 * 109.47018 * 239.99733 * 2 1 3 6 6 C 1.38287 * 119.92563 * 99.99988 * 5 2 1 7 7 C 1.38105 * 120.07808 * 179.97438 * 6 5 2 8 8 C 1.38914 * 119.92363 * 0.02562 * 7 6 5 9 9 N 1.39667 * 120.07644 * 179.97438 * 8 7 6 10 10 C 1.46503 * 120.00217 * 270.61723 * 9 8 7 11 11 C 1.50699 * 109.47171 * 89.99840 * 10 9 8 12 12 H 1.07999 * 120.00004 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99948 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00128 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00039 * 359.97438 * 13 11 10 16 16 H 1.48511 * 109.46950 * 90.00305 * 15 13 11 17 17 H 1.48496 * 109.47107 * 210.00239 * 15 13 11 18 18 H 1.48500 * 109.47133 * 330.00289 * 15 13 11 19 19 C 1.46502 * 120.00091 * 90.33886 * 9 8 7 20 20 C 1.53004 * 117.49482 * 3.31950 * 19 9 8 21 21 C 1.52999 * 117.49619 * 294.69688 * 19 9 8 22 22 C 1.38920 * 119.84840 * 0.25466 * 8 7 6 23 23 C 1.38101 * 119.92366 * 359.48713 * 22 8 7 24 24 H 1.09002 * 109.47096 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46776 * 300.00173 * 1 2 3 26 26 H 1.09000 * 109.46668 * 59.99744 * 1 2 3 27 27 H 0.96703 * 114.00084 * 59.99719 * 4 2 1 28 28 H 1.07998 * 119.96278 * 0.02562 * 6 5 2 29 29 H 1.07993 * 120.03807 * 180.02562 * 7 6 5 30 30 H 1.08994 * 109.46999 * 209.99869 * 10 9 8 31 31 H 1.09005 * 109.46851 * 329.99958 * 10 9 8 32 32 H 0.97001 * 119.99929 * 179.97438 * 14 13 11 33 33 H 1.09000 * 115.54999 * 149.02632 * 19 9 8 34 34 H 1.08998 * 117.49893 * 359.97438 * 20 19 9 35 35 H 1.08997 * 117.49694 * 145.02180 * 20 19 9 36 36 H 1.09003 * 117.49707 * 214.97289 * 21 19 9 37 37 H 1.09002 * 117.50123 * 359.97229 * 21 19 9 38 38 H 1.07999 * 120.03531 * 179.72441 * 22 8 7 39 39 H 1.08000 * 119.96190 * 180.25322 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0324 -0.7104 -1.2304 6 6 2.4585 0.0211 -2.3238 7 6 2.9199 -0.6267 -3.4528 8 6 2.9552 -2.0149 -3.4895 9 7 3.4207 -2.6734 -4.6299 10 6 2.4892 -3.0242 -5.7048 11 6 2.4166 -1.8914 -6.6961 12 1 3.0051 -0.9993 -6.5407 13 6 1.5980 -1.9936 -7.8009 14 7 1.5342 -1.0049 -8.6658 15 14 0.5796 -3.5364 -8.0693 16 1 -0.7431 -3.3768 -7.4130 17 1 0.3865 -3.7550 -9.5253 18 1 1.2855 -4.7038 -7.4828 19 6 4.8416 -3.0079 -4.7538 20 6 5.7507 -2.6795 -3.5678 21 6 5.8347 -1.8479 -4.8494 22 6 2.5209 -2.7468 -2.3915 23 6 2.0657 -2.0925 -1.2638 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.7210 -1.5953 1.2330 28 1 2.4313 1.1004 -2.2945 29 1 3.2530 -0.0547 -4.3062 30 1 2.8382 -3.9257 -6.2082 31 1 1.4996 -3.2028 -5.2841 32 1 0.9586 -1.0770 -9.4432 33 1 5.0643 -3.9094 -5.3246 34 1 5.2917 -2.2142 -2.6955 35 1 6.5717 -3.3651 -3.3580 36 1 6.7110 -1.9865 -5.4826 37 1 5.4308 -0.8359 -4.8205 38 1 2.5428 -3.8263 -2.4185 39 1 1.7317 -2.6609 -0.4083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042547512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:04 Heat of formation + Delta-G solvation = 12.450872 kcal Electronic energy + Delta-G solvation = -19592.597306 eV Core-core repulsion = 16694.201067 eV Total energy + Delta-G solvation = -2898.396239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.60412 -37.83763 -36.21892 -33.73219 -32.33465 -31.15586 -30.51037 -28.79232 -26.66511 -23.60810 -22.44182 -21.98411 -21.77061 -21.13152 -19.43855 -17.34744 -16.78886 -15.96501 -15.67018 -15.59853 -14.90666 -14.18856 -14.14870 -13.94908 -13.50092 -13.14960 -13.00454 -12.77991 -12.30690 -12.21131 -12.01555 -11.77921 -11.42342 -11.16968 -11.09072 -10.87312 -10.80874 -10.49773 -10.35788 -10.07900 -9.88443 -9.80069 -9.35313 -8.57888 -8.53810 -8.07758 -6.81122 -6.06247 -4.03328 1.67069 1.80261 3.26618 3.34236 3.35398 4.05611 4.12476 4.40017 4.43416 4.46077 4.75724 5.01112 5.12910 5.24507 5.28539 5.35487 5.41692 5.46736 5.59595 5.63632 5.76257 5.85695 6.00177 6.03223 6.11349 6.14615 6.29043 6.41109 6.49670 6.62045 6.66515 6.84535 6.86888 6.89631 7.19512 7.27308 7.52989 7.68243 8.20435 8.55991 8.71092 9.02910 9.56664 11.07339 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018529 B = 0.006147 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.778088 B = 4553.805810 C = 5336.935536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.147 3.853 3 H 0.103 0.897 4 O -0.561 6.561 5 C -0.137 4.137 6 C -0.108 4.108 7 C -0.112 4.112 8 C 0.205 3.795 9 N -0.645 5.645 10 C 0.247 3.753 11 C -0.526 4.526 12 H 0.076 0.924 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.872 3.128 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.136 3.864 20 C -0.203 4.203 21 C -0.206 4.206 22 C -0.130 4.130 23 C -0.113 4.113 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.372 0.628 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.022 0.978 31 H 0.014 0.986 32 H 0.262 0.738 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 -2.030 15.198 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 H 0.121 0.879 4 O -0.367 6.367 5 C -0.137 4.137 6 C -0.127 4.127 7 C -0.132 4.132 8 C 0.112 3.888 9 N -0.368 5.368 10 C 0.126 3.874 11 C -0.566 4.566 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.540 5.540 15 Si 0.699 3.301 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.190 1.190 19 C 0.030 3.970 20 C -0.242 4.242 21 C -0.246 4.246 22 C -0.150 4.150 23 C -0.132 4.132 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.220 0.780 28 H 0.135 0.865 29 H 0.144 0.856 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.786 -1.441 15.082 15.256 hybrid contribution -0.901 -1.088 -0.654 1.557 sum 0.885 -2.530 14.429 14.676 Atomic orbital electron populations 1.22487 0.95778 1.02784 1.02674 1.20743 0.92757 0.95762 0.81881 0.87946 1.86584 1.77477 1.29054 1.43602 1.20339 1.02501 0.94284 0.96602 1.20842 0.99493 0.99278 0.93097 1.21857 0.98638 0.95224 0.97488 1.17393 0.94255 0.89955 0.87167 1.45477 1.04306 1.68931 1.18120 1.19310 0.87443 0.95594 0.85038 1.21670 1.25757 1.03321 1.05808 0.90631 1.24920 0.96567 0.96012 0.95850 1.69910 1.39472 1.31718 1.12920 0.86915 0.81195 0.84415 0.77534 1.20280 1.21188 1.19042 1.21087 0.79934 0.96732 0.99248 1.23242 1.02868 1.04673 0.93374 1.23395 1.03030 0.98580 0.99627 1.21567 1.00119 0.99949 0.93371 1.20559 1.01385 0.93442 0.97783 0.92202 0.91891 0.91191 0.78007 0.86542 0.85582 0.96020 0.96851 0.92772 0.87178 0.89217 0.89275 0.89478 0.89099 0.86383 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 9.51 37.16 0.35 -1.46 16 2 C 0.15 1.70 3.82 -27.88 -0.11 1.60 16 3 H 0.10 1.14 8.00 -51.93 -0.42 0.72 16 4 O -0.56 -6.53 13.19 -35.23 -0.46 -6.99 16 5 C -0.14 -1.91 4.98 -104.59 -0.52 -2.43 16 6 C -0.11 -1.68 9.66 -39.61 -0.38 -2.07 16 7 C -0.11 -2.07 9.82 -39.38 -0.39 -2.46 16 8 C 0.20 3.85 3.49 -83.79 -0.29 3.55 16 9 N -0.65 -13.18 2.72 -165.54 -0.45 -13.63 16 10 C 0.25 5.85 4.55 -5.19 -0.02 5.83 16 11 C -0.53 -14.64 9.94 -34.44 -0.34 -14.98 16 12 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 13 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 14 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 15 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 19 C 0.14 2.45 6.57 -67.93 -0.45 2.00 16 20 C -0.20 -3.11 9.84 -26.73 -0.26 -3.38 16 21 C -0.21 -3.49 10.37 -26.73 -0.28 -3.77 16 22 C -0.13 -2.11 9.92 -39.38 -0.39 -2.50 16 23 C -0.11 -1.57 9.31 -39.61 -0.37 -1.94 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.37 3.15 7.50 45.56 0.34 3.49 16 28 H 0.12 1.56 8.03 -52.49 -0.42 1.14 16 29 H 0.13 2.55 7.94 -52.49 -0.42 2.13 16 30 H 0.02 0.51 7.13 -51.93 -0.37 0.14 16 31 H 0.01 0.33 7.48 -51.93 -0.39 -0.06 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 34 H 0.09 1.45 7.02 -51.93 -0.36 1.08 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.09 1.68 7.88 -51.93 -0.41 1.27 16 38 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.11 1.19 6.78 -52.49 -0.36 0.84 16 LS Contribution 326.38 15.07 4.92 4.92 Total: -1.00 -30.83 326.38 -8.79 -39.62 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.35 Total: 6.39 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -3.54 Total: -20.15 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.32 Total: -40.26 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.46 Total: -6.99 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.83 -8.79 -39.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042547512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.068 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds