Wall clock time and date at job start Mon Mar 30 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47096 * 2 1 4 4 O 1.42903 * 109.47092 * 120.00023 * 2 1 3 5 5 C 1.50695 * 109.47018 * 239.99733 * 2 1 3 6 6 C 1.38287 * 119.92563 * 99.99988 * 5 2 1 7 7 C 1.38105 * 120.07808 * 179.97438 * 6 5 2 8 8 C 1.38914 * 119.92363 * 0.02562 * 7 6 5 9 9 N 1.39667 * 120.07644 * 179.97438 * 8 7 6 10 10 C 1.46503 * 120.00217 * 270.61723 * 9 8 7 11 11 C 1.50699 * 109.47171 * 89.99840 * 10 9 8 12 12 H 1.07999 * 120.00004 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99948 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00128 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00039 * 359.97438 * 13 11 10 16 16 H 1.48511 * 109.46950 * 90.00305 * 15 13 11 17 17 H 1.48496 * 109.47107 * 210.00239 * 15 13 11 18 18 H 1.48500 * 109.47133 * 330.00289 * 15 13 11 19 19 C 1.46502 * 120.00091 * 90.33886 * 9 8 7 20 20 C 1.53004 * 117.49482 * 3.31950 * 19 9 8 21 21 C 1.52999 * 117.49619 * 294.69688 * 19 9 8 22 22 C 1.38920 * 119.84840 * 0.25466 * 8 7 6 23 23 C 1.38101 * 119.92366 * 359.48713 * 22 8 7 24 24 H 1.09002 * 109.47096 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46776 * 300.00173 * 1 2 3 26 26 H 1.09000 * 109.46668 * 59.99744 * 1 2 3 27 27 H 0.96703 * 114.00084 * 59.99719 * 4 2 1 28 28 H 1.07998 * 119.96278 * 0.02562 * 6 5 2 29 29 H 1.07993 * 120.03807 * 180.02562 * 7 6 5 30 30 H 1.08994 * 109.46999 * 209.99869 * 10 9 8 31 31 H 1.09005 * 109.46851 * 329.99958 * 10 9 8 32 32 H 0.97001 * 119.99929 * 179.97438 * 14 13 11 33 33 H 1.09000 * 115.54999 * 149.02632 * 19 9 8 34 34 H 1.08998 * 117.49893 * 359.97438 * 20 19 9 35 35 H 1.08997 * 117.49694 * 145.02180 * 20 19 9 36 36 H 1.09003 * 117.49707 * 214.97289 * 21 19 9 37 37 H 1.09002 * 117.50123 * 359.97229 * 21 19 9 38 38 H 1.07999 * 120.03531 * 179.72441 * 22 8 7 39 39 H 1.08000 * 119.96190 * 180.25322 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0324 -0.7104 -1.2304 6 6 2.4585 0.0211 -2.3238 7 6 2.9199 -0.6267 -3.4528 8 6 2.9552 -2.0149 -3.4895 9 7 3.4207 -2.6734 -4.6299 10 6 2.4892 -3.0242 -5.7048 11 6 2.4166 -1.8914 -6.6961 12 1 3.0051 -0.9993 -6.5407 13 6 1.5980 -1.9936 -7.8009 14 7 1.5342 -1.0049 -8.6658 15 14 0.5796 -3.5364 -8.0693 16 1 -0.7431 -3.3768 -7.4130 17 1 0.3865 -3.7550 -9.5253 18 1 1.2855 -4.7038 -7.4828 19 6 4.8416 -3.0079 -4.7538 20 6 5.7507 -2.6795 -3.5678 21 6 5.8347 -1.8479 -4.8494 22 6 2.5209 -2.7468 -2.3915 23 6 2.0657 -2.0925 -1.2638 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.7210 -1.5953 1.2330 28 1 2.4313 1.1004 -2.2945 29 1 3.2530 -0.0547 -4.3062 30 1 2.8382 -3.9257 -6.2082 31 1 1.4996 -3.2028 -5.2841 32 1 0.9586 -1.0770 -9.4432 33 1 5.0643 -3.9094 -5.3246 34 1 5.2917 -2.2142 -2.6955 35 1 6.5717 -3.3651 -3.3580 36 1 6.7110 -1.9865 -5.4826 37 1 5.4308 -0.8359 -4.8205 38 1 2.5428 -3.8263 -2.4185 39 1 1.7317 -2.6609 -0.4083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042547512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:03 Heat of formation + Delta-G solvation = -6.777732 kcal Electronic energy + Delta-G solvation = -19593.431121 eV Core-core repulsion = 16694.201067 eV Total energy + Delta-G solvation = -2899.230054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83890 -39.04394 -37.36308 -35.47784 -34.11657 -32.38378 -31.75274 -30.20510 -28.29570 -24.78685 -23.87619 -23.65783 -23.06585 -22.34583 -20.80195 -18.93742 -18.37978 -17.35426 -17.17953 -16.74439 -16.03406 -15.95591 -15.46316 -15.14233 -14.88926 -14.51879 -14.28502 -14.02949 -13.89923 -13.77977 -13.21852 -12.98568 -12.88507 -12.67822 -12.41697 -12.34269 -12.27383 -11.93938 -11.78680 -11.62194 -11.38664 -11.16840 -11.03212 -10.76715 -9.80305 -9.34992 -8.39448 -8.25792 -6.30071 0.41360 0.53633 1.35415 1.36664 1.47586 2.34860 2.63688 2.82723 3.06184 3.11386 3.59339 3.73232 3.98133 4.06161 4.10449 4.14544 4.22795 4.30494 4.36178 4.56233 4.68785 4.78220 4.82035 4.87841 4.90009 4.96971 5.02698 5.04599 5.13124 5.19090 5.25609 5.30246 5.42570 5.54602 5.66317 5.88027 6.00605 6.22428 6.70392 6.82288 6.82581 7.14012 7.37334 8.90251 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018529 B = 0.006147 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.778088 B = 4553.805810 C = 5336.935536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.153 3.847 3 H 0.105 0.895 4 O -0.569 6.569 5 C -0.129 4.129 6 C -0.113 4.113 7 C -0.139 4.139 8 C 0.177 3.823 9 N -0.651 5.651 10 C 0.257 3.743 11 C -0.528 4.528 12 H 0.025 0.975 13 C 0.005 3.995 14 N -0.953 5.953 15 Si 0.947 3.053 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.241 1.241 19 C 0.110 3.890 20 C -0.165 4.165 21 C -0.219 4.219 22 C -0.132 4.132 23 C -0.102 4.102 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.387 0.613 28 H 0.130 0.870 29 H 0.087 0.913 30 H 0.030 0.970 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.131 0.869 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.932 -4.388 17.942 18.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.094 3.906 3 H 0.123 0.877 4 O -0.377 6.377 5 C -0.129 4.129 6 C -0.131 4.131 7 C -0.160 4.160 8 C 0.085 3.915 9 N -0.374 5.374 10 C 0.135 3.865 11 C -0.567 4.567 12 H 0.044 0.956 13 C -0.192 4.192 14 N -0.594 5.594 15 Si 0.770 3.230 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.164 1.164 19 C 0.004 3.996 20 C -0.203 4.203 21 C -0.259 4.259 22 C -0.152 4.152 23 C -0.121 4.121 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.237 0.763 28 H 0.148 0.852 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.139 0.861 34 H 0.100 0.900 35 H 0.141 0.859 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.149 0.851 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.098 -3.808 17.867 18.301 hybrid contribution -0.623 -0.212 -1.429 1.573 sum 0.475 -4.020 16.437 16.928 Atomic orbital electron populations 1.22446 0.94381 1.03440 1.03038 1.20714 0.93648 0.95590 0.80642 0.87675 1.86579 1.77720 1.30378 1.43040 1.20688 1.00803 0.94657 0.96741 1.21018 0.99109 1.00251 0.92771 1.21689 1.01037 0.95563 0.97667 1.17613 0.96183 0.89956 0.87766 1.45388 1.04875 1.69266 1.17918 1.19008 0.88501 0.93901 0.85136 1.21923 1.24679 1.03050 1.07070 0.95625 1.25902 0.98027 0.99832 0.95392 1.70087 1.40956 1.34484 1.13852 0.85728 0.79384 0.80331 0.77577 1.19477 1.20920 1.16450 1.21386 0.79179 0.97240 1.01795 1.23205 1.02056 1.03318 0.91715 1.23358 1.03446 0.97118 1.01997 1.21672 0.99865 1.00522 0.93100 1.20991 0.99400 0.93574 0.98088 0.91426 0.90451 0.91949 0.76276 0.85196 0.89490 0.95217 0.96753 0.92678 0.86118 0.89965 0.85922 0.87931 0.92039 0.85113 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 9.51 71.98 0.68 -2.31 16 2 C 0.15 3.08 3.82 29.85 0.11 3.20 16 3 H 0.11 2.08 8.00 -2.39 -0.02 2.06 16 4 O -0.57 -11.06 13.19 -148.98 -1.96 -13.02 16 5 C -0.13 -3.31 4.98 -19.84 -0.10 -3.40 16 6 C -0.11 -3.53 9.66 22.25 0.21 -3.32 16 7 C -0.14 -5.45 9.82 22.40 0.22 -5.23 16 8 C 0.18 6.72 3.49 38.22 0.13 6.85 16 9 N -0.65 -27.08 2.72 -677.64 -1.85 -28.93 16 10 C 0.26 12.28 4.55 85.63 0.39 12.67 16 11 C -0.53 -30.75 9.94 25.60 0.25 -30.49 16 12 H 0.03 1.70 8.06 -2.91 -0.02 1.67 16 13 C 0.01 0.30 5.47 84.66 0.46 0.77 16 14 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 15 Si 0.95 43.80 27.47 68.60 1.88 45.68 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.24 -10.14 6.54 99.48 0.65 -9.48 16 19 C 0.11 3.94 6.57 44.99 0.30 4.23 16 20 C -0.17 -4.84 9.84 30.60 0.30 -4.54 16 21 C -0.22 -7.65 10.37 30.60 0.32 -7.33 16 22 C -0.13 -4.03 9.92 22.40 0.22 -3.81 16 23 C -0.10 -2.51 9.31 22.25 0.21 -2.30 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.39 4.74 7.50 -74.06 -0.56 4.18 16 28 H 0.13 3.55 8.03 -2.91 -0.02 3.53 16 29 H 0.09 3.98 7.94 -2.91 -0.02 3.95 16 30 H 0.03 1.38 7.13 -2.39 -0.02 1.36 16 31 H 0.01 0.69 7.48 -2.38 -0.02 0.67 16 32 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 34 H 0.08 2.57 7.02 -2.39 -0.02 2.55 16 35 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.06 2.49 7.88 -2.39 -0.02 2.47 16 38 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 39 H 0.15 2.47 6.78 -2.91 -0.02 2.45 16 Total: -1.00 -70.38 326.38 2.51 -67.87 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.42 Total: 23.52 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 3.72 Total: -35.01 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -1.55 Total: -89.05 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.96 Total: -13.02 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.68 kcal Total: -70.38 2.51 -67.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042547512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.095 kcal (2) G-P(sol) polarization free energy of solvation -70.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds