Wall clock time and date at job start Mon Mar 30 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47036 * 2 1 4 4 O 1.42900 * 109.47123 * 239.99720 * 2 1 3 5 5 C 1.50705 * 109.46765 * 119.99778 * 2 1 3 6 6 C 1.38123 * 120.03539 * 95.00520 * 5 2 1 7 7 C 1.38263 * 120.07203 * 179.97438 * 6 5 2 8 8 C 1.38311 * 120.15395 * 359.97438 * 7 6 5 9 9 C 1.38085 * 120.07083 * 359.97438 * 8 7 6 10 10 C 1.38888 * 120.03720 * 274.71805 * 5 2 1 11 11 N 1.39670 * 120.07453 * 0.03297 * 10 5 2 12 12 C 1.46901 * 111.00200 * 116.04387 * 11 10 5 13 13 C 1.50704 * 109.47170 * 198.39460 * 12 11 10 14 14 H 1.08006 * 119.99848 * 2.13071 * 13 12 11 15 15 C 1.37872 * 120.00182 * 182.13445 * 13 12 11 16 16 N 1.31520 * 120.00115 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00170 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46941 * 60.00009 * 17 15 13 19 19 H 1.48503 * 109.46953 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46892 * 299.99864 * 17 15 13 21 21 C 1.46905 * 110.99826 * 239.99137 * 11 10 5 22 22 C 1.52994 * 117.50203 * 235.12817 * 21 11 10 23 23 C 1.53002 * 117.49760 * 166.46603 * 21 11 10 24 24 H 1.09004 * 109.46880 * 300.00192 * 1 2 3 25 25 H 1.08993 * 109.47154 * 59.99940 * 1 2 3 26 26 H 1.08997 * 109.46887 * 180.02562 * 1 2 3 27 27 H 0.96704 * 113.99669 * 299.99908 * 4 2 1 28 28 H 1.07999 * 119.96429 * 359.96763 * 6 5 2 29 29 H 1.08007 * 119.92158 * 179.97438 * 7 6 5 30 30 H 1.07996 * 119.96223 * 179.97438 * 8 7 6 31 31 H 1.07999 * 120.03541 * 180.02562 * 9 8 7 32 32 H 1.09001 * 109.46832 * 318.39437 * 12 11 10 33 33 H 1.09000 * 109.47400 * 78.39431 * 12 11 10 34 34 H 0.96993 * 120.00513 * 180.02562 * 16 15 13 35 35 H 1.08996 * 115.54936 * 20.80320 * 21 11 10 36 36 H 1.09006 * 117.50003 * 0.02562 * 22 21 11 37 37 H 1.09007 * 117.49870 * 145.02273 * 22 21 11 38 38 H 1.08998 * 117.50186 * 214.98225 * 23 21 11 39 39 H 1.08996 * 117.49958 * 0.02562 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2306 6 6 2.3611 -2.0505 1.1694 7 6 2.8225 -2.7029 2.2978 8 6 2.9569 -2.0165 3.4910 9 6 2.6310 -0.6764 3.5588 10 6 2.1708 -0.0168 2.4259 11 7 1.8443 1.3397 2.4899 12 6 0.7145 1.5668 3.4009 13 6 0.1027 2.9144 3.1163 14 1 0.4903 3.5248 2.3140 15 6 -0.9516 3.3680 3.8801 16 7 -1.4232 2.6250 4.8575 17 14 -1.7095 5.0387 3.5278 18 1 -2.2367 5.0602 2.1397 19 1 -2.8191 5.2901 4.4822 20 1 -0.6755 6.0935 3.6810 21 6 3.0088 2.1434 2.8849 22 6 2.8570 3.0558 4.1035 23 6 2.9172 3.6592 2.6980 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.7210 -1.5953 -1.2328 28 1 2.2576 -2.5894 0.2392 29 1 3.0784 -3.7510 2.2473 30 1 3.3172 -2.5292 4.3705 31 1 2.7366 -0.1408 4.4907 32 1 -0.0344 0.7890 3.2520 33 1 1.0676 1.5386 4.4318 34 1 -2.1652 2.9440 5.3947 35 1 3.9796 1.6744 2.7252 36 1 1.8931 3.0595 4.6125 37 1 3.7281 3.1874 4.7454 38 1 3.8279 4.1874 2.4157 39 1 1.9928 4.0601 2.2824 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042547535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:05 Heat of formation + Delta-G solvation = 16.125766 kcal Electronic energy + Delta-G solvation = -20325.530079 eV Core-core repulsion = 17427.293195 eV Total energy + Delta-G solvation = -2898.236884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.87296 -37.67711 -36.47508 -33.32474 -32.66303 -31.37663 -29.35409 -28.58304 -26.56514 -23.46000 -22.84619 -22.00505 -21.43157 -20.50614 -19.19963 -17.39261 -16.64187 -15.87646 -15.51059 -14.95086 -14.76158 -14.27219 -14.16461 -13.73587 -13.50439 -13.13598 -12.70699 -12.38733 -11.90116 -11.80808 -11.74242 -11.54315 -11.30539 -11.05967 -10.87657 -10.77800 -10.58105 -10.36280 -9.95474 -9.91922 -9.76426 -9.49414 -9.09574 -8.47133 -8.45969 -8.10048 -7.31837 -6.09189 -4.10517 1.69321 1.70606 3.29866 3.34447 3.37079 4.05802 4.32965 4.54183 4.73788 4.87035 5.05669 5.18519 5.25702 5.35480 5.54955 5.68972 5.70927 5.77266 5.79175 5.87870 5.96245 5.98078 6.19034 6.29882 6.42404 6.44511 6.48554 6.71829 6.77406 6.81225 6.90940 7.01199 7.13490 7.14839 7.32463 7.36989 7.81707 7.87145 8.02302 8.10836 8.51803 8.96011 9.52769 11.00587 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019888 B = 0.007115 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.520286 B = 3934.655799 C = 4291.294972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.153 3.847 3 H 0.122 0.878 4 O -0.566 6.566 5 C -0.099 4.099 6 C -0.115 4.115 7 C -0.134 4.134 8 C -0.118 4.118 9 C -0.145 4.145 10 C 0.123 3.877 11 N -0.477 5.477 12 C 0.197 3.803 13 C -0.506 4.506 14 H 0.072 0.928 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.275 1.275 21 C 0.026 3.974 22 C -0.207 4.207 23 C -0.171 4.171 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.365 0.635 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.026 0.974 33 H 0.010 0.990 34 H 0.262 0.738 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.153 -7.249 -4.886 11.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.095 3.905 3 H 0.139 0.861 4 O -0.372 6.372 5 C -0.101 4.101 6 C -0.134 4.134 7 C -0.152 4.152 8 C -0.136 4.136 9 C -0.165 4.165 10 C 0.029 3.971 11 N -0.197 5.197 12 C 0.074 3.926 13 C -0.545 4.545 14 H 0.090 0.910 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.082 4.082 22 C -0.245 4.245 23 C -0.208 4.208 24 H 0.105 0.895 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.212 0.788 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.044 0.956 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.148 0.852 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.106 -6.498 -5.320 11.001 hybrid contribution -0.531 0.044 1.056 1.183 sum 6.576 -6.454 -4.264 10.153 Atomic orbital electron populations 1.22395 0.95236 1.01549 1.03973 1.20696 0.93235 0.96370 0.80205 0.86056 1.86623 1.77507 1.28535 1.44499 1.20461 1.00097 0.93840 0.95653 1.20701 1.00637 0.93860 0.98198 1.20951 1.01767 0.99388 0.93138 1.20983 1.00614 0.94461 0.97583 1.21869 1.00518 0.95189 0.98899 1.18855 0.95689 0.90771 0.91833 1.59715 1.06070 1.01064 1.52848 1.19948 0.85929 0.97556 0.89159 1.21216 1.15262 1.01759 1.16224 0.91046 1.24956 0.96746 0.97528 0.95160 1.69946 1.26273 1.37384 1.19950 0.86623 0.78874 0.84254 0.78125 1.20172 1.21435 1.20090 1.22335 0.92713 0.91057 1.02113 1.23616 1.04077 1.05265 0.91590 1.23257 1.02809 0.94763 0.99992 0.89482 0.92193 0.93495 0.78840 0.86516 0.86659 0.86728 0.86197 0.95553 0.97265 0.92814 0.88811 0.85186 0.91096 0.90773 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.52 37.16 0.35 -2.49 16 2 C 0.15 2.53 3.53 -27.88 -0.10 2.43 16 3 H 0.12 2.26 7.62 -51.93 -0.40 1.86 16 4 O -0.57 -8.40 12.99 -35.23 -0.46 -8.86 16 5 C -0.10 -1.68 5.08 -104.42 -0.53 -2.21 16 6 C -0.12 -1.66 9.30 -39.61 -0.37 -2.03 16 7 C -0.13 -1.85 10.04 -39.55 -0.40 -2.25 16 8 C -0.12 -1.76 10.04 -39.61 -0.40 -2.15 16 9 C -0.14 -2.55 8.85 -39.38 -0.35 -2.89 16 10 C 0.12 2.32 4.47 -83.79 -0.37 1.94 16 11 N -0.48 -9.80 3.66 -164.92 -0.60 -10.41 16 12 C 0.20 4.76 3.87 -4.97 -0.02 4.74 16 13 C -0.51 -13.02 6.69 -34.44 -0.23 -13.25 16 14 H 0.07 1.82 5.34 -52.48 -0.28 1.54 16 15 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -25.32 13.29 55.43 0.74 -24.59 16 17 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.03 0.50 5.53 -67.71 -0.37 0.12 16 22 C -0.21 -4.03 9.14 -26.70 -0.24 -4.28 16 23 C -0.17 -3.21 9.83 -26.69 -0.26 -3.47 16 24 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.36 3.99 7.33 45.56 0.33 4.33 16 28 H 0.12 1.33 6.41 -52.49 -0.34 1.00 16 29 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 30 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.12 2.16 7.88 -52.49 -0.41 1.74 16 32 H 0.03 0.71 7.94 -51.93 -0.41 0.30 16 33 H 0.01 0.25 6.23 -51.93 -0.32 -0.07 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.09 1.68 7.94 -51.93 -0.41 1.27 16 36 H 0.13 3.00 5.01 -51.93 -0.26 2.74 16 37 H 0.07 1.22 8.14 -51.92 -0.42 0.79 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.12 2.41 5.29 -51.93 -0.27 2.14 16 LS Contribution 314.26 15.07 4.74 4.74 Total: -1.00 -27.99 314.26 -8.87 -36.86 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -4.87 Total: 10.78 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -3.39 Total: -24.33 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.13 Total: -34.99 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.46 Total: -8.86 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.99 -8.87 -36.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042547535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.989 kcal (2) G-P(sol) polarization free energy of solvation -27.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds