Wall clock time and date at job start Mon Mar 30 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47036 * 2 1 4 4 O 1.42900 * 109.47123 * 239.99720 * 2 1 3 5 5 C 1.50705 * 109.46765 * 119.99778 * 2 1 3 6 6 C 1.38123 * 120.03539 * 95.00520 * 5 2 1 7 7 C 1.38263 * 120.07203 * 179.97438 * 6 5 2 8 8 C 1.38311 * 120.15395 * 359.97438 * 7 6 5 9 9 C 1.38085 * 120.07083 * 359.97438 * 8 7 6 10 10 C 1.38888 * 120.03720 * 274.71805 * 5 2 1 11 11 N 1.39670 * 120.07453 * 0.03297 * 10 5 2 12 12 C 1.46901 * 111.00200 * 116.04387 * 11 10 5 13 13 C 1.50704 * 109.47170 * 198.39460 * 12 11 10 14 14 H 1.08006 * 119.99848 * 2.13071 * 13 12 11 15 15 C 1.37872 * 120.00182 * 182.13445 * 13 12 11 16 16 N 1.31520 * 120.00115 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00170 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46941 * 60.00009 * 17 15 13 19 19 H 1.48503 * 109.46953 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46892 * 299.99864 * 17 15 13 21 21 C 1.46905 * 110.99826 * 239.99137 * 11 10 5 22 22 C 1.52994 * 117.50203 * 235.12817 * 21 11 10 23 23 C 1.53002 * 117.49760 * 166.46603 * 21 11 10 24 24 H 1.09004 * 109.46880 * 300.00192 * 1 2 3 25 25 H 1.08993 * 109.47154 * 59.99940 * 1 2 3 26 26 H 1.08997 * 109.46887 * 180.02562 * 1 2 3 27 27 H 0.96704 * 113.99669 * 299.99908 * 4 2 1 28 28 H 1.07999 * 119.96429 * 359.96763 * 6 5 2 29 29 H 1.08007 * 119.92158 * 179.97438 * 7 6 5 30 30 H 1.07996 * 119.96223 * 179.97438 * 8 7 6 31 31 H 1.07999 * 120.03541 * 180.02562 * 9 8 7 32 32 H 1.09001 * 109.46832 * 318.39437 * 12 11 10 33 33 H 1.09000 * 109.47400 * 78.39431 * 12 11 10 34 34 H 0.96993 * 120.00513 * 180.02562 * 16 15 13 35 35 H 1.08996 * 115.54936 * 20.80320 * 21 11 10 36 36 H 1.09006 * 117.50003 * 0.02562 * 22 21 11 37 37 H 1.09007 * 117.49870 * 145.02273 * 22 21 11 38 38 H 1.08998 * 117.50186 * 214.98225 * 23 21 11 39 39 H 1.08996 * 117.49958 * 0.02562 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2306 6 6 2.3611 -2.0505 1.1694 7 6 2.8225 -2.7029 2.2978 8 6 2.9569 -2.0165 3.4910 9 6 2.6310 -0.6764 3.5588 10 6 2.1708 -0.0168 2.4259 11 7 1.8443 1.3397 2.4899 12 6 0.7145 1.5668 3.4009 13 6 0.1027 2.9144 3.1163 14 1 0.4903 3.5248 2.3140 15 6 -0.9516 3.3680 3.8801 16 7 -1.4232 2.6250 4.8575 17 14 -1.7095 5.0387 3.5278 18 1 -2.2367 5.0602 2.1397 19 1 -2.8191 5.2901 4.4822 20 1 -0.6755 6.0935 3.6810 21 6 3.0088 2.1434 2.8849 22 6 2.8570 3.0558 4.1035 23 6 2.9172 3.6592 2.6980 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.7210 -1.5953 -1.2328 28 1 2.2576 -2.5894 0.2392 29 1 3.0784 -3.7510 2.2473 30 1 3.3172 -2.5292 4.3705 31 1 2.7366 -0.1408 4.4907 32 1 -0.0344 0.7890 3.2520 33 1 1.0676 1.5386 4.4318 34 1 -2.1652 2.9440 5.3947 35 1 3.9796 1.6744 2.7252 36 1 1.8931 3.0595 4.6125 37 1 3.7281 3.1874 4.7454 38 1 3.8279 4.1874 2.4157 39 1 1.9928 4.0601 2.2824 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042547535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:05 Heat of formation + Delta-G solvation = -0.837026 kcal Electronic energy + Delta-G solvation = -20326.265641 eV Core-core repulsion = 17427.293195 eV Total energy + Delta-G solvation = -2898.972446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24382 -39.14099 -37.72268 -34.96395 -34.51783 -32.64214 -30.74592 -30.09988 -28.27793 -24.86222 -24.60806 -23.37638 -23.00650 -21.77199 -20.75392 -18.95124 -18.24069 -17.40448 -16.84431 -16.67775 -16.24196 -15.84763 -15.52980 -15.07197 -14.78328 -14.61323 -14.22949 -13.97478 -13.58321 -13.47003 -13.14322 -12.86236 -12.78685 -12.72750 -12.58802 -12.26984 -12.09366 -11.82007 -11.75154 -11.51163 -11.14224 -11.05195 -10.95481 -10.54060 -9.70624 -9.40565 -8.94913 -8.16529 -6.23703 0.43825 0.46934 1.41609 1.42857 1.50030 2.40302 2.82278 2.94623 3.16234 3.35422 3.57026 3.80414 4.04456 4.16558 4.20279 4.20811 4.35686 4.38518 4.41818 4.51194 4.64256 4.66818 4.88482 4.90236 5.02257 5.05595 5.13955 5.19364 5.26743 5.35254 5.37141 5.55950 5.60006 5.61151 5.74021 5.80537 6.04227 6.14319 6.27629 6.82475 6.89245 6.89816 7.43480 8.93314 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019888 B = 0.007115 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.520286 B = 3934.655799 C = 4291.294972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.164 3.836 3 H 0.094 0.906 4 O -0.567 6.567 5 C -0.112 4.112 6 C -0.112 4.112 7 C -0.123 4.123 8 C -0.118 4.118 9 C -0.164 4.164 10 C 0.087 3.913 11 N -0.477 5.477 12 C 0.224 3.776 13 C -0.504 4.504 14 H 0.072 0.928 15 C 0.007 3.993 16 N -0.933 5.933 17 Si 0.955 3.045 18 H -0.271 1.271 19 H -0.288 1.288 20 H -0.267 1.267 21 C 0.025 3.975 22 C -0.210 4.210 23 C -0.163 4.163 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.384 0.616 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.140 0.860 31 H 0.102 0.898 32 H -0.010 1.010 33 H -0.017 1.017 34 H 0.261 0.739 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.522 -8.577 -6.415 13.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.105 3.895 3 H 0.112 0.888 4 O -0.375 6.375 5 C -0.113 4.113 6 C -0.130 4.130 7 C -0.141 4.141 8 C -0.136 4.136 9 C -0.184 4.184 10 C -0.007 4.007 11 N -0.197 5.197 12 C 0.100 3.900 13 C -0.542 4.542 14 H 0.090 0.910 15 C -0.191 4.191 16 N -0.574 5.574 17 Si 0.780 3.220 18 H -0.196 1.196 19 H -0.214 1.214 20 H -0.192 1.192 21 C -0.084 4.084 22 C -0.248 4.248 23 C -0.201 4.201 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.234 0.766 28 H 0.171 0.829 29 H 0.174 0.826 30 H 0.158 0.842 31 H 0.120 0.880 32 H 0.008 0.992 33 H 0.001 0.999 34 H 0.070 0.930 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.491 -7.840 -6.869 13.444 hybrid contribution -0.890 0.317 1.497 1.771 sum 7.601 -7.523 -5.371 11.968 Atomic orbital electron populations 1.22286 0.95449 1.02334 1.02261 1.20337 0.92827 0.95440 0.80859 0.88780 1.86592 1.77411 1.30122 1.43362 1.20605 1.00644 0.95126 0.94930 1.21144 0.99035 0.92718 1.00081 1.21433 0.99566 1.01105 0.91976 1.21313 0.99667 0.93246 0.99388 1.21836 1.01957 0.96738 0.97901 1.19041 0.98178 0.90083 0.93428 1.59552 1.05737 1.03014 1.51351 1.19435 0.86443 0.95668 0.88475 1.21470 1.14922 1.02231 1.15615 0.90985 1.25737 0.97385 1.00915 0.95034 1.70077 1.26960 1.39193 1.21169 0.85650 0.78074 0.80294 0.77966 1.19606 1.21375 1.19199 1.22467 0.92887 0.91231 1.01768 1.23435 1.03046 1.06263 0.92074 1.23242 1.03177 0.94718 0.98945 0.93528 0.91413 0.91471 0.76568 0.82873 0.82603 0.84174 0.87961 0.99226 0.99941 0.92983 0.87085 0.89241 0.88495 0.87387 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.40 9.52 71.98 0.69 -4.72 16 2 C 0.16 5.32 3.53 29.85 0.11 5.43 16 3 H 0.09 3.56 7.62 -2.39 -0.02 3.54 16 4 O -0.57 -15.36 12.99 -148.98 -1.94 -17.30 16 5 C -0.11 -3.68 5.08 -19.73 -0.10 -3.78 16 6 C -0.11 -2.84 9.30 22.25 0.21 -2.63 16 7 C -0.12 -2.90 10.04 22.29 0.22 -2.68 16 8 C -0.12 -3.26 10.04 22.25 0.22 -3.04 16 9 C -0.16 -5.84 8.85 22.40 0.20 -5.65 16 10 C 0.09 3.33 4.47 38.22 0.17 3.50 16 11 N -0.48 -20.45 3.66 -675.69 -2.47 -22.92 16 12 C 0.22 11.55 3.87 85.56 0.33 11.88 16 13 C -0.50 -27.15 6.69 25.60 0.17 -26.98 16 14 H 0.07 3.82 5.34 -2.91 -0.02 3.80 16 15 C 0.01 0.40 5.46 84.65 0.46 0.86 16 16 N -0.93 -55.09 13.29 21.45 0.28 -54.81 16 17 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 C 0.02 0.95 5.53 44.91 0.25 1.20 16 22 C -0.21 -8.34 9.14 30.62 0.28 -8.06 16 23 C -0.16 -6.12 9.83 30.62 0.30 -5.81 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.38 6.92 7.33 -74.05 -0.54 6.38 16 28 H 0.15 2.71 6.41 -2.91 -0.02 2.69 16 29 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.10 3.89 7.88 -2.91 -0.02 3.87 16 32 H -0.01 -0.60 7.94 -2.39 -0.02 -0.62 16 33 H -0.02 -0.95 6.23 -2.39 -0.01 -0.97 16 34 H 0.26 14.74 8.31 -92.71 -0.77 13.96 16 35 H 0.11 3.92 7.94 -2.39 -0.02 3.90 16 36 H 0.09 4.37 5.01 -2.38 -0.01 4.36 16 37 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16 38 H 0.11 3.29 8.14 -2.39 -0.02 3.28 16 39 H 0.09 3.89 5.29 -2.39 -0.01 3.87 16 Total: -1.00 -63.93 314.26 1.92 -62.00 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.51 Total: 27.72 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 3.51 Total: -40.47 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.19 Total: -77.73 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -1.94 Total: -17.30 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -63.93 1.92 -62.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042547535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.167 kcal (2) G-P(sol) polarization free energy of solvation -63.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds