Wall clock time and date at job start Mon Mar 30 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47075 * 2 1 4 4 O 1.42907 * 109.47025 * 119.99615 * 2 1 3 5 5 C 1.50693 * 109.47224 * 239.99325 * 2 1 3 6 6 C 1.38125 * 120.04349 * 264.72245 * 5 2 1 7 7 C 1.38258 * 120.07979 * 179.76910 * 6 5 2 8 8 C 1.38316 * 120.14586 * 0.51149 * 7 6 5 9 9 C 1.38074 * 120.07665 * 359.74599 * 8 7 6 10 10 C 1.38896 * 120.03527 * 85.00566 * 5 2 1 11 11 N 1.39669 * 120.07650 * 359.97438 * 10 5 2 12 12 C 1.46907 * 110.99978 * 116.04952 * 11 10 5 13 13 C 1.50701 * 109.46809 * 286.34557 * 12 11 10 14 14 H 1.07992 * 120.00252 * 5.03213 * 13 12 11 15 15 C 1.37877 * 119.99505 * 185.02460 * 13 12 11 16 16 N 1.31514 * 120.00522 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99858 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46909 * 89.99829 * 17 15 13 19 19 H 1.48496 * 109.46954 * 209.99818 * 17 15 13 20 20 H 1.48491 * 109.46866 * 330.00288 * 17 15 13 21 21 C 1.46897 * 111.00605 * 240.00581 * 11 10 5 22 22 C 1.52999 * 117.50076 * 245.86646 * 21 11 10 23 23 C 1.52999 * 117.50237 * 177.20448 * 21 11 10 24 24 H 1.09004 * 109.47619 * 300.00483 * 1 2 3 25 25 H 1.09000 * 109.47104 * 60.00594 * 1 2 3 26 26 H 1.09000 * 109.47477 * 180.02562 * 1 2 3 27 27 H 0.96695 * 113.99676 * 180.02562 * 4 2 1 28 28 H 1.08002 * 119.95887 * 0.02562 * 6 5 2 29 29 H 1.07993 * 119.92972 * 180.27865 * 7 6 5 30 30 H 1.08004 * 119.95841 * 179.72196 * 8 7 6 31 31 H 1.07999 * 120.03893 * 180.02562 * 9 8 7 32 32 H 1.08999 * 109.46951 * 46.34757 * 12 11 10 33 33 H 1.08992 * 109.47272 * 166.34678 * 12 11 10 34 34 H 0.96997 * 120.00694 * 179.97438 * 16 15 13 35 35 H 1.09001 * 115.54982 * 31.53332 * 21 11 10 36 36 H 1.08997 * 117.49649 * 359.97438 * 22 21 11 37 37 H 1.08996 * 117.49881 * 145.01764 * 22 21 11 38 38 H 1.08999 * 117.49879 * 214.97727 * 23 21 11 39 39 H 1.08994 * 117.49868 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0323 -0.7105 -1.2303 6 6 2.3665 -2.0493 -1.1677 7 6 2.8229 -2.7031 -2.2972 8 6 2.9566 -2.0169 -3.4907 9 6 2.6293 -0.6772 -3.5591 10 6 2.1654 -0.0184 -2.4272 11 7 1.8335 1.3367 -2.4928 12 6 3.0150 2.1538 -2.8000 13 6 3.9023 2.2307 -1.5843 14 1 3.6594 1.6583 -0.7014 15 6 5.0243 3.0319 -1.5995 16 7 5.3200 3.7292 -2.6746 17 14 6.1247 3.1268 -0.0928 18 1 7.1747 2.0803 -0.1801 19 1 6.7640 4.4656 -0.0304 20 1 5.3100 2.9097 1.1295 21 6 0.7632 1.5699 -3.4716 22 6 1.1103 2.3895 -4.7161 23 6 0.2373 2.9993 -3.6164 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.9702 -0.7114 1.2332 28 1 2.2672 -2.5870 -0.2364 29 1 3.0793 -3.7509 -2.2466 30 1 3.3177 -2.5295 -4.3701 31 1 2.7335 -0.1421 -4.4914 32 1 3.5660 1.7005 -3.6240 33 1 2.6989 3.1577 -3.0831 34 1 6.1092 4.2931 -2.6852 35 1 0.0475 0.7561 -3.5885 36 1 2.1326 2.7561 -4.8082 37 1 0.6226 2.1152 -5.6515 38 1 -0.8242 3.1259 -3.8289 39 1 0.6852 3.7666 -2.9850 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042547538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:07 Heat of formation + Delta-G solvation = 10.244789 kcal Electronic energy + Delta-G solvation = -20426.810388 eV Core-core repulsion = 17528.318486 eV Total energy + Delta-G solvation = -2898.491902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.80429 -37.60011 -36.26166 -33.67212 -32.45636 -31.42484 -29.31719 -28.41043 -26.62151 -23.20568 -23.00559 -21.91369 -21.77906 -20.27070 -19.11825 -17.31283 -16.73276 -16.29018 -15.22659 -15.03267 -14.63043 -14.35505 -14.23510 -13.68639 -13.33770 -13.17123 -12.45988 -12.22979 -11.89011 -11.85389 -11.72289 -11.41818 -11.32395 -11.02106 -11.00803 -10.88447 -10.78065 -10.51675 -10.27712 -10.02169 -9.75421 -9.54859 -9.20873 -8.50539 -8.29732 -7.96482 -7.36889 -6.09435 -4.10427 1.84215 1.87543 3.27942 3.34601 3.37718 4.21437 4.25052 4.38961 4.71996 4.74016 5.20919 5.27457 5.39344 5.41068 5.45333 5.47147 5.64256 5.68385 5.84711 5.91911 5.99394 6.04918 6.10449 6.21240 6.32670 6.45133 6.53011 6.58308 6.61421 6.69565 6.90591 6.93059 7.02181 7.11833 7.28297 7.40961 7.69220 7.99607 8.07998 8.25453 8.41227 8.94797 9.53375 11.01159 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013450 B = 0.009434 C = 0.007635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.336192 B = 2967.131308 C = 3666.518655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.146 3.854 3 H 0.092 0.908 4 O -0.575 6.575 5 C -0.102 4.102 6 C -0.109 4.109 7 C -0.140 4.140 8 C -0.116 4.116 9 C -0.146 4.146 10 C 0.143 3.857 11 N -0.476 5.476 12 C 0.194 3.806 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.030 3.970 22 C -0.223 4.223 23 C -0.171 4.171 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.377 0.623 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.116 0.884 32 H -0.002 1.002 33 H 0.044 0.956 34 H 0.262 0.738 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.648 -8.024 -0.458 11.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.088 3.912 3 H 0.109 0.891 4 O -0.380 6.380 5 C -0.103 4.103 6 C -0.127 4.127 7 C -0.158 4.158 8 C -0.135 4.135 9 C -0.166 4.166 10 C 0.049 3.951 11 N -0.196 5.196 12 C 0.071 3.929 13 C -0.544 4.544 14 H 0.081 0.919 15 C -0.143 4.143 16 N -0.536 5.536 17 Si 0.722 3.278 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.196 1.196 21 C -0.079 4.079 22 C -0.262 4.262 23 C -0.209 4.209 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.224 0.776 28 H 0.141 0.859 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.016 0.984 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.329 -7.781 0.063 11.398 hybrid contribution 1.751 -0.001 -0.388 1.794 sum -6.577 -7.781 -0.326 10.194 Atomic orbital electron populations 1.21630 0.93288 1.01477 1.02261 1.20645 0.94367 0.95751 0.80454 0.89072 1.86379 1.26781 1.80618 1.44262 1.20434 1.00485 0.93733 0.95647 1.20843 0.99585 0.93944 0.98353 1.20959 1.02207 0.99392 0.93225 1.20931 1.00478 0.94494 0.97618 1.21695 1.00556 0.95082 0.99263 1.18581 0.94982 0.89527 0.92007 1.59693 1.11076 1.03171 1.45622 1.19992 0.84398 0.92177 0.96332 1.21104 1.07402 1.26341 0.99589 0.91945 1.24933 0.97676 0.95453 0.96260 1.69932 1.26945 1.28846 1.27917 0.86546 0.80710 0.77331 0.83202 1.20732 1.21212 1.19646 1.22540 0.97389 0.94451 0.93526 1.23614 1.02233 1.06934 0.93400 1.23020 0.98539 0.97088 1.02206 0.92449 0.90749 0.93134 0.77642 0.85920 0.86888 0.86974 0.86556 0.98401 0.93828 0.92860 0.87724 0.87353 0.89868 0.89374 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.54 37.16 0.35 -1.66 16 2 C 0.15 2.59 3.44 -27.89 -0.10 2.49 16 3 H 0.09 1.87 6.15 -51.93 -0.32 1.55 16 4 O -0.57 -9.53 12.17 -35.23 -0.43 -9.96 16 5 C -0.10 -1.85 5.05 -104.42 -0.53 -2.37 16 6 C -0.11 -1.77 9.33 -39.62 -0.37 -2.14 16 7 C -0.14 -2.13 10.04 -39.55 -0.40 -2.53 16 8 C -0.12 -1.88 10.04 -39.61 -0.40 -2.27 16 9 C -0.15 -2.70 8.51 -39.38 -0.34 -3.03 16 10 C 0.14 2.80 4.17 -83.79 -0.35 2.45 16 11 N -0.48 -9.70 3.68 -164.92 -0.61 -10.31 16 12 C 0.19 4.74 3.29 -4.97 -0.02 4.73 16 13 C -0.51 -13.61 8.91 -34.44 -0.31 -13.92 16 14 H 0.06 1.66 6.24 -52.49 -0.33 1.33 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 17 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.03 0.52 5.52 -67.72 -0.37 0.14 16 22 C -0.22 -3.75 9.56 -26.69 -0.26 -4.01 16 23 C -0.17 -2.78 9.92 -26.69 -0.26 -3.04 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.38 5.40 9.05 45.56 0.41 5.81 16 28 H 0.12 1.80 7.34 -52.49 -0.39 1.41 16 29 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 31 H 0.12 2.16 7.62 -52.49 -0.40 1.76 16 32 H 0.00 -0.05 6.79 -51.93 -0.35 -0.40 16 33 H 0.04 1.14 5.68 -51.93 -0.30 0.84 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.10 1.67 8.04 -51.93 -0.42 1.26 16 36 H 0.11 2.13 6.00 -51.93 -0.31 1.82 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.10 1.83 7.51 -51.93 -0.39 1.44 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -28.94 318.36 -8.84 -37.78 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -4.88 Total: 10.20 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -3.43 Total: -23.65 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.13 Total: -35.42 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.43 Total: -9.96 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.94 -8.84 -37.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042547538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.021 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds