Wall clock time and date at job start Mon Mar 30 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47075 * 2 1 4 4 O 1.42907 * 109.47025 * 119.99615 * 2 1 3 5 5 C 1.50693 * 109.47224 * 239.99325 * 2 1 3 6 6 C 1.38125 * 120.04349 * 264.72245 * 5 2 1 7 7 C 1.38258 * 120.07979 * 179.76910 * 6 5 2 8 8 C 1.38316 * 120.14586 * 0.51149 * 7 6 5 9 9 C 1.38074 * 120.07665 * 359.74599 * 8 7 6 10 10 C 1.38896 * 120.03527 * 85.00566 * 5 2 1 11 11 N 1.39669 * 120.07650 * 359.97438 * 10 5 2 12 12 C 1.46907 * 110.99978 * 116.04952 * 11 10 5 13 13 C 1.50701 * 109.46809 * 286.34557 * 12 11 10 14 14 H 1.07992 * 120.00252 * 5.03213 * 13 12 11 15 15 C 1.37877 * 119.99505 * 185.02460 * 13 12 11 16 16 N 1.31514 * 120.00522 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99858 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46909 * 89.99829 * 17 15 13 19 19 H 1.48496 * 109.46954 * 209.99818 * 17 15 13 20 20 H 1.48491 * 109.46866 * 330.00288 * 17 15 13 21 21 C 1.46897 * 111.00605 * 240.00581 * 11 10 5 22 22 C 1.52999 * 117.50076 * 245.86646 * 21 11 10 23 23 C 1.52999 * 117.50237 * 177.20448 * 21 11 10 24 24 H 1.09004 * 109.47619 * 300.00483 * 1 2 3 25 25 H 1.09000 * 109.47104 * 60.00594 * 1 2 3 26 26 H 1.09000 * 109.47477 * 180.02562 * 1 2 3 27 27 H 0.96695 * 113.99676 * 180.02562 * 4 2 1 28 28 H 1.08002 * 119.95887 * 0.02562 * 6 5 2 29 29 H 1.07993 * 119.92972 * 180.27865 * 7 6 5 30 30 H 1.08004 * 119.95841 * 179.72196 * 8 7 6 31 31 H 1.07999 * 120.03893 * 180.02562 * 9 8 7 32 32 H 1.08999 * 109.46951 * 46.34757 * 12 11 10 33 33 H 1.08992 * 109.47272 * 166.34678 * 12 11 10 34 34 H 0.96997 * 120.00694 * 179.97438 * 16 15 13 35 35 H 1.09001 * 115.54982 * 31.53332 * 21 11 10 36 36 H 1.08997 * 117.49649 * 359.97438 * 22 21 11 37 37 H 1.08996 * 117.49881 * 145.01764 * 22 21 11 38 38 H 1.08999 * 117.49879 * 214.97727 * 23 21 11 39 39 H 1.08994 * 117.49868 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0323 -0.7105 -1.2303 6 6 2.3665 -2.0493 -1.1677 7 6 2.8229 -2.7031 -2.2972 8 6 2.9566 -2.0169 -3.4907 9 6 2.6293 -0.6772 -3.5591 10 6 2.1654 -0.0184 -2.4272 11 7 1.8335 1.3367 -2.4928 12 6 3.0150 2.1538 -2.8000 13 6 3.9023 2.2307 -1.5843 14 1 3.6594 1.6583 -0.7014 15 6 5.0243 3.0319 -1.5995 16 7 5.3200 3.7292 -2.6746 17 14 6.1247 3.1268 -0.0928 18 1 7.1747 2.0803 -0.1801 19 1 6.7640 4.4656 -0.0304 20 1 5.3100 2.9097 1.1295 21 6 0.7632 1.5699 -3.4716 22 6 1.1103 2.3895 -4.7161 23 6 0.2373 2.9993 -3.6164 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.9702 -0.7114 1.2332 28 1 2.2672 -2.5870 -0.2364 29 1 3.0793 -3.7509 -2.2466 30 1 3.3177 -2.5295 -4.3701 31 1 2.7335 -0.1421 -4.4914 32 1 3.5660 1.7005 -3.6240 33 1 2.6989 3.1577 -3.0831 34 1 6.1092 4.2931 -2.6852 35 1 0.0475 0.7561 -3.5885 36 1 2.1326 2.7561 -4.8082 37 1 0.6226 2.1152 -5.6515 38 1 -0.8242 3.1259 -3.8289 39 1 0.6852 3.7666 -2.9850 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042547538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:07 Heat of formation + Delta-G solvation = -7.333789 kcal Electronic energy + Delta-G solvation = -20427.572653 eV Core-core repulsion = 17528.318486 eV Total energy + Delta-G solvation = -2899.254167 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22434 -39.01128 -37.58254 -35.36294 -34.28159 -32.76687 -30.72880 -29.93362 -28.37264 -24.94563 -24.47083 -23.29721 -23.16410 -21.61691 -20.62599 -18.95484 -18.24334 -17.84756 -16.83810 -16.73682 -16.05388 -15.91627 -15.66206 -15.01115 -14.72212 -14.58875 -14.31787 -13.63785 -13.47032 -13.26449 -13.11873 -13.02065 -12.72914 -12.64757 -12.59907 -12.40300 -12.30929 -12.09691 -11.93841 -11.56269 -11.21365 -11.17375 -10.88146 -10.61492 -9.63746 -9.33801 -8.96355 -8.20833 -6.28920 0.51020 0.53376 1.38048 1.38927 1.49633 2.37411 2.84368 2.89150 3.12443 3.27393 3.45583 3.90023 3.99733 4.08714 4.10468 4.22758 4.27720 4.42250 4.55346 4.58100 4.68778 4.73987 4.77869 4.96511 4.98261 5.09258 5.15272 5.16894 5.22217 5.28219 5.31056 5.34486 5.60053 5.64912 5.65528 5.77503 6.02006 6.08401 6.44017 6.71730 6.82115 6.90358 7.39386 8.89593 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013450 B = 0.009434 C = 0.007635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.336192 B = 2967.131308 C = 3666.518655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.151 3.849 3 H 0.055 0.945 4 O -0.574 6.574 5 C -0.113 4.113 6 C -0.108 4.108 7 C -0.130 4.130 8 C -0.117 4.117 9 C -0.164 4.164 10 C 0.114 3.886 11 N -0.477 5.477 12 C 0.217 3.783 13 C -0.516 4.516 14 H 0.062 0.938 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.958 3.042 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.263 1.263 21 C 0.020 3.980 22 C -0.220 4.220 23 C -0.160 4.160 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.385 0.615 28 H 0.143 0.857 29 H 0.151 0.849 30 H 0.139 0.861 31 H 0.103 0.897 32 H -0.033 1.033 33 H 0.019 0.981 34 H 0.263 0.737 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.342 -10.155 0.384 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.092 3.908 3 H 0.073 0.927 4 O -0.381 6.381 5 C -0.114 4.114 6 C -0.127 4.127 7 C -0.148 4.148 8 C -0.135 4.135 9 C -0.185 4.185 10 C 0.021 3.979 11 N -0.196 5.196 12 C 0.093 3.907 13 C -0.554 4.554 14 H 0.080 0.920 15 C -0.192 4.192 16 N -0.573 5.573 17 Si 0.783 3.217 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.187 1.187 21 C -0.088 4.088 22 C -0.259 4.259 23 C -0.197 4.197 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.234 0.766 28 H 0.160 0.840 29 H 0.168 0.832 30 H 0.157 0.843 31 H 0.121 0.879 32 H -0.015 1.015 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.144 0.856 36 H 0.090 0.910 37 H 0.131 0.869 38 H 0.143 0.857 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.035 -9.926 0.910 13.452 hybrid contribution 1.953 0.592 -0.679 2.151 sum -7.081 -9.333 0.231 11.718 Atomic orbital electron populations 1.21578 0.91743 1.02272 1.02438 1.20464 0.95562 0.93912 0.80835 0.92673 1.86363 1.27748 1.80208 1.43754 1.20553 1.01046 0.94757 0.95057 1.21119 0.98768 0.93152 0.99636 1.21380 1.00228 1.01008 0.92156 1.21261 0.99544 0.93500 0.99233 1.21740 1.01730 0.96413 0.98573 1.18738 0.97046 0.89036 0.93129 1.59540 1.09767 1.03759 1.46553 1.19499 0.85464 0.91359 0.94345 1.21453 1.07831 1.25927 1.00209 0.91996 1.25777 0.99182 0.95207 0.99056 1.70061 1.27576 1.29727 1.29911 0.85543 0.78850 0.77365 0.79926 1.20127 1.20928 1.18710 1.22719 0.97093 0.95660 0.93316 1.23506 1.00760 1.06897 0.94753 1.23056 1.00190 0.95527 1.00972 0.91806 0.91072 0.91920 0.76634 0.83973 0.83180 0.84329 0.87861 1.01515 0.96343 0.92857 0.85634 0.91049 0.86895 0.85659 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.67 9.54 71.98 0.69 -2.99 16 2 C 0.15 5.25 3.44 29.84 0.10 5.35 16 3 H 0.06 2.32 6.15 -2.39 -0.01 2.30 16 4 O -0.57 -18.11 12.17 -148.98 -1.81 -19.92 16 5 C -0.11 -3.99 5.05 -19.74 -0.10 -4.09 16 6 C -0.11 -3.23 9.33 22.25 0.21 -3.02 16 7 C -0.13 -3.52 10.04 22.29 0.22 -3.29 16 8 C -0.12 -3.51 10.04 22.25 0.22 -3.29 16 9 C -0.16 -6.07 8.51 22.40 0.19 -5.88 16 10 C 0.11 4.49 4.17 38.22 0.16 4.65 16 11 N -0.48 -20.03 3.68 -675.70 -2.49 -22.52 16 12 C 0.22 11.22 3.29 85.56 0.28 11.51 16 13 C -0.52 -28.68 8.91 25.60 0.23 -28.45 16 14 H 0.06 3.38 6.24 -2.91 -0.02 3.36 16 15 C 0.01 0.33 5.46 84.65 0.46 0.79 16 16 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 17 Si 0.96 44.21 29.54 68.60 2.03 46.23 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 C 0.02 0.71 5.52 44.92 0.25 0.96 16 22 C -0.22 -7.57 9.56 30.62 0.29 -7.28 16 23 C -0.16 -5.20 9.92 30.62 0.30 -4.89 16 24 H 0.06 1.78 8.14 -2.38 -0.02 1.77 16 25 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.39 10.46 9.05 -74.06 -0.67 9.79 16 28 H 0.14 3.65 7.34 -2.91 -0.02 3.63 16 29 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 31 H 0.10 3.97 7.62 -2.91 -0.02 3.95 16 32 H -0.03 -1.86 6.79 -2.39 -0.02 -1.88 16 33 H 0.02 1.04 5.68 -2.39 -0.01 1.02 16 34 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.13 3.87 8.04 -2.39 -0.02 3.86 16 36 H 0.07 3.01 6.00 -2.39 -0.01 3.00 16 37 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.07 2.81 7.51 -2.39 -0.02 2.79 16 Total: -1.00 -64.13 318.36 1.90 -62.23 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.38 Total: 29.18 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 3.51 Total: -39.92 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.20 Total: -77.80 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -1.81 Total: -19.92 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -64.13 1.90 -62.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042547538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.896 kcal (2) G-P(sol) polarization free energy of solvation -64.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds