Wall clock time and date at job start Mon Mar 30 2020 06:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35901 * 117.00151 * 2 1 4 4 C 1.38747 * 120.05195 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.94525 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05234 * 0.02565 * 5 4 3 7 7 C 1.38241 * 120.11196 * 0.24816 * 6 5 4 8 8 C 1.50704 * 119.97293 * 179.70593 * 7 6 5 9 9 N 1.46899 * 109.47155 * 90.00142 * 8 7 6 10 10 C 1.46901 * 110.99788 * 189.99817 * 9 8 7 11 11 C 1.50699 * 109.46853 * 162.84585 * 10 9 8 12 12 H 1.07999 * 120.00232 * 4.66051 * 11 10 9 13 13 C 1.37878 * 119.99896 * 184.65643 * 11 10 9 14 14 N 1.31509 * 120.00275 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99886 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47340 * 59.99594 * 15 13 11 17 17 H 1.48498 * 109.47243 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47045 * 299.99446 * 15 13 11 19 19 C 1.46892 * 110.99960 * 66.04507 * 9 8 7 20 20 C 1.53002 * 117.49858 * 127.42965 * 19 9 8 21 21 C 1.52993 * 60.00313 * 252.50739 * 20 19 9 22 22 C 1.38167 * 120.05462 * 359.45292 * 7 6 5 23 23 H 1.09003 * 109.47196 * 299.99618 * 1 2 3 24 24 H 1.09000 * 109.46902 * 60.00267 * 1 2 3 25 25 H 1.09007 * 109.46831 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.03470 * 0.04318 * 4 3 2 27 27 H 1.07996 * 119.97557 * 179.97438 * 5 4 3 28 28 H 1.08000 * 119.94248 * 179.97438 * 6 5 4 29 29 H 1.09006 * 109.47034 * 210.00371 * 8 7 6 30 30 H 1.08997 * 109.47123 * 329.99558 * 8 7 6 31 31 H 1.08990 * 109.47439 * 282.84903 * 10 9 8 32 32 H 1.09003 * 109.47174 * 42.85423 * 10 9 8 33 33 H 0.97001 * 120.00284 * 179.97438 * 14 13 11 34 34 H 1.08998 * 115.55672 * 273.13823 * 19 9 8 35 35 H 1.08998 * 117.49855 * 0.02562 * 20 19 9 36 36 H 1.09002 * 117.50221 * 145.01683 * 20 19 9 37 37 H 1.09000 * 117.50401 * 252.50758 * 21 20 19 38 38 H 1.09003 * 117.51674 * 107.47836 * 21 20 19 39 39 H 1.08001 * 120.02926 * 180.24999 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9208 3.6047 0.0000 6 6 3.3019 3.6757 -0.0016 7 6 4.0559 2.5171 -0.0079 8 6 5.5608 2.5982 -0.0163 9 7 6.0576 2.6221 1.3659 10 6 7.4918 2.9378 1.4044 11 6 7.8747 3.3658 2.7976 12 1 7.1458 3.3282 3.5936 13 6 9.1557 3.8055 3.0561 14 7 10.0435 3.8508 2.0870 15 14 9.6306 4.3354 4.7833 16 1 9.4464 3.1969 5.7187 17 1 11.0527 4.7626 4.7967 18 1 8.7699 5.4688 5.2076 19 6 5.7800 1.3508 2.0472 20 6 6.9540 0.6413 2.7250 21 6 6.3630 0.0772 1.4315 22 6 3.4311 1.2848 -0.0011 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2128 2.3203 0.0017 27 1 1.3340 4.5113 0.0000 28 1 3.7922 4.6380 -0.0024 29 1 5.9685 1.7299 -0.5340 30 1 5.8728 3.5072 -0.5304 31 1 8.0659 2.0545 1.1250 32 1 7.7049 3.7459 0.7046 33 1 10.9446 4.1605 2.2688 34 1 4.8032 1.2770 2.5253 35 1 7.9323 1.1183 2.6657 36 1 6.7498 0.1009 3.6493 37 1 5.7699 -0.8344 1.5047 38 1 6.9522 0.1827 0.5206 39 1 4.0206 0.3799 -0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549197.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:42 Heat of formation + Delta-G solvation = 25.515978 kcal Electronic energy + Delta-G solvation = -19527.766679 eV Core-core repulsion = 16629.936986 eV Total energy + Delta-G solvation = -2897.829694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.04285 -38.45937 -37.06106 -33.18662 -32.68916 -30.82305 -30.00239 -27.49084 -26.98670 -24.58164 -22.71986 -22.35610 -21.53100 -20.77909 -18.88203 -17.48064 -16.23601 -16.16773 -15.93959 -15.73547 -15.58117 -14.75939 -14.12054 -14.02936 -13.61998 -13.50779 -12.98585 -12.43723 -12.32222 -12.09401 -11.89988 -11.53712 -11.31307 -11.11343 -10.87763 -10.84061 -10.75026 -10.54075 -10.20722 -9.90514 -9.70073 -9.31054 -9.19928 -8.62788 -8.40796 -8.00690 -7.20533 -6.00713 -4.00128 1.52999 1.67640 3.30367 3.35757 3.39687 3.43272 3.95313 4.45569 4.62356 4.85417 4.97281 5.02947 5.05962 5.09181 5.28626 5.34672 5.35391 5.58044 5.62088 5.71167 5.75057 5.77706 5.84274 5.99605 6.17102 6.25926 6.32530 6.46595 6.63168 6.65858 6.75258 6.91936 6.98480 7.14497 7.22859 7.40872 7.51437 7.84706 8.10320 8.21847 8.53989 9.07185 9.62074 11.09534 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030673 B = 0.004740 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.641908 B = 5905.606124 C = 6231.811851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.118 3.882 4 C -0.217 4.217 5 C -0.086 4.086 6 C -0.135 4.135 7 C -0.020 4.020 8 C 0.090 3.910 9 N -0.499 5.499 10 C 0.186 3.814 11 C -0.495 4.495 12 H 0.064 0.936 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.277 1.277 19 C 0.040 3.960 20 C -0.172 4.172 21 C -0.231 4.231 22 C -0.141 4.141 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.038 0.962 30 H 0.080 0.920 31 H -0.003 1.003 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.270 -5.232 -5.128 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.073 3.927 4 C -0.236 4.236 5 C -0.104 4.104 6 C -0.154 4.154 7 C -0.021 4.021 8 C -0.038 4.038 9 N -0.221 5.221 10 C 0.062 3.938 11 C -0.533 4.533 12 H 0.082 0.918 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.202 1.202 19 C -0.070 4.070 20 C -0.209 4.209 21 C -0.270 4.270 22 C -0.160 4.160 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.015 0.985 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.151 0.849 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.224 -4.975 -4.916 17.667 hybrid contribution 0.437 -0.207 0.539 0.724 sum -15.787 -5.182 -4.377 17.182 Atomic orbital electron populations 1.22982 0.78980 1.03471 1.01122 1.86060 1.20897 1.27352 1.89126 1.18974 0.92286 0.83856 0.97575 1.21102 0.99428 0.92577 1.10522 1.20872 0.94666 0.96657 0.98226 1.20999 0.93293 0.98521 1.02579 1.19742 0.95997 0.91800 0.94554 1.21083 0.89476 1.01170 0.92047 1.62230 1.20827 1.27488 1.11583 1.19890 0.80234 0.95446 0.98249 1.21075 0.95737 1.42073 0.94443 0.91798 1.24961 0.96543 0.96004 0.97144 1.69942 1.04430 1.47835 1.31820 0.86587 0.77168 0.79148 0.84687 1.20255 1.21491 1.20241 1.22507 0.97253 0.85661 1.01543 1.23529 1.01378 1.01828 0.94150 1.23336 1.06400 0.98813 0.98485 1.20359 0.90930 0.98562 1.06118 0.92857 0.92946 0.88624 0.86155 0.86186 0.85702 0.94440 0.90188 0.98492 0.95045 0.92910 0.87952 0.84871 0.90220 0.90086 0.89712 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.27 10.50 -19.43 -0.20 -4.47 16 3 C 0.12 1.70 6.69 -39.22 -0.26 1.44 16 4 C -0.22 -2.79 9.04 -39.44 -0.36 -3.15 16 5 C -0.09 -1.13 10.04 -39.60 -0.40 -1.52 16 6 C -0.14 -2.04 9.70 -39.56 -0.38 -2.42 16 7 C -0.02 -0.33 5.03 -104.64 -0.53 -0.86 16 8 C 0.09 1.64 5.01 -4.97 -0.02 1.61 16 9 N -0.50 -10.70 4.66 -229.52 -1.07 -11.77 16 10 C 0.19 4.71 4.27 -4.98 -0.02 4.69 16 11 C -0.49 -13.50 6.85 -34.44 -0.24 -13.74 16 12 H 0.06 1.77 7.80 -52.49 -0.41 1.36 16 13 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 14 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 15 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.04 0.79 4.75 -67.71 -0.32 0.47 16 20 C -0.17 -3.48 8.87 -26.73 -0.24 -3.71 16 21 C -0.23 -4.15 8.67 -26.73 -0.23 -4.39 16 22 C -0.14 -2.21 8.76 -39.43 -0.35 -2.56 16 23 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 24 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.12 1.22 6.30 -52.49 -0.33 0.89 16 27 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.04 0.67 6.80 -51.93 -0.35 0.32 16 30 H 0.08 1.44 7.79 -51.93 -0.40 1.03 16 31 H 0.00 -0.07 6.03 -51.93 -0.31 -0.38 16 32 H 0.03 0.85 7.79 -51.93 -0.40 0.45 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.10 1.99 8.11 -51.93 -0.42 1.56 16 35 H 0.13 3.17 4.91 -51.93 -0.25 2.92 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.58 7.14 -51.93 -0.37 1.21 16 39 H 0.13 2.01 7.41 -52.49 -0.39 1.62 16 LS Contribution 316.50 15.07 4.77 4.77 Total: -1.00 -29.60 316.50 -8.94 -38.54 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.70 Total: 3.39 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -2.45 Total: -21.48 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.33 Total: -37.24 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.20 Total: -4.47 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.60 -8.94 -38.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549197.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.052 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds