Wall clock time and date at job start Mon Mar 30 2020 07:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46887 * 2 1 4 4 C 1.50705 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.38105 * 120.40258 * 125.00025 * 4 3 2 6 6 C 1.39627 * 118.33396 * 180.02562 * 5 4 3 7 7 N 1.38543 * 120.53158 * 179.97438 * 6 5 4 8 8 C 1.46504 * 119.99907 * 189.05057 * 7 6 5 9 9 C 1.50694 * 109.47208 * 270.27272 * 8 7 6 10 10 H 1.08002 * 120.00359 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99911 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99823 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99938 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47241 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46673 * 120.00148 * 13 11 9 16 16 H 1.48497 * 109.47338 * 240.00162 * 13 11 9 17 17 C 1.46499 * 119.99870 * 9.32789 * 7 6 5 18 18 C 1.53010 * 117.49823 * 182.50419 * 17 7 6 19 19 C 1.53008 * 117.50063 * 113.84844 * 17 7 6 20 20 N 1.32988 * 118.93748 * 0.24172 * 6 5 4 21 21 C 1.31757 * 120.68504 * 359.49668 * 20 6 5 22 22 N 1.31782 * 121.82865 * 0.52631 * 21 20 6 23 23 H 1.09001 * 109.47263 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47747 * 300.00611 * 1 2 3 25 25 H 1.09006 * 109.46911 * 60.00206 * 1 2 3 26 26 H 1.08997 * 109.47526 * 239.99891 * 2 1 3 27 27 H 1.08998 * 109.46933 * 119.99127 * 2 1 3 28 28 H 1.08997 * 109.47127 * 59.99646 * 3 2 1 29 29 H 1.08996 * 109.47082 * 299.99555 * 3 2 1 30 30 H 1.08004 * 120.83414 * 359.97438 * 5 4 3 31 31 H 1.08998 * 109.46754 * 30.27873 * 8 7 6 32 32 H 1.09000 * 109.46589 * 150.27769 * 8 7 6 33 33 H 0.96998 * 119.99366 * 179.97438 * 12 11 9 34 34 H 1.09001 * 115.55341 * 328.16998 * 17 7 6 35 35 H 1.08997 * 117.49461 * 359.97438 * 18 17 7 36 36 H 1.08996 * 117.49604 * 145.02080 * 18 17 7 37 37 H 1.08996 * 117.49884 * 214.97975 * 19 17 7 38 38 H 1.08998 * 117.49562 * 359.97438 * 19 17 7 39 39 H 1.07995 * 119.08331 * 180.26054 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2463 2.1257 -0.9749 6 6 5.6416 2.0963 -0.9333 7 7 6.3884 2.7652 -1.8895 8 6 7.8386 2.5680 -1.9561 9 6 8.5239 3.5766 -1.0708 10 1 7.9380 4.2927 -0.5137 11 6 9.8991 3.5846 -0.9710 12 7 10.6126 2.7123 -1.6489 13 14 10.7486 4.8344 0.1272 14 1 9.7289 5.6967 0.7768 15 1 11.5331 4.1251 1.1695 16 1 11.6591 5.6747 -0.6914 17 6 5.7288 3.6744 -2.8300 18 6 6.5991 4.3379 -3.8994 19 6 6.0645 5.1636 -2.7265 20 7 6.2423 1.4116 0.0357 21 6 5.5350 0.7782 0.9493 22 7 4.2173 0.7866 0.9373 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 1.6765 1.9564 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.7269 2.6683 -1.7510 31 1 8.0842 1.5613 -1.6181 32 1 8.1761 2.6985 -2.9844 33 1 11.5801 2.7183 -1.5789 34 1 4.7090 3.4064 -3.1062 35 1 7.6624 4.0983 -3.9028 36 1 6.1516 4.5068 -4.8788 37 1 5.2657 5.8752 -2.9348 38 1 6.7758 5.4668 -1.9583 39 1 6.0496 0.2336 1.7270 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:56 Heat of formation + Delta-G solvation = 69.981911 kcal Electronic energy + Delta-G solvation = -19422.888906 eV Core-core repulsion = 16559.280151 eV Total energy + Delta-G solvation = -2863.608755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35425 -37.84612 -35.48718 -33.91794 -32.75359 -31.85443 -30.32759 -27.79301 -26.46361 -23.93459 -23.27799 -22.13983 -21.78900 -21.18133 -19.43118 -17.15584 -16.86818 -16.41866 -15.19570 -14.98777 -14.87231 -14.56292 -14.28325 -14.06784 -13.54364 -13.40511 -13.05333 -12.56537 -12.19544 -12.02279 -11.57150 -11.49474 -11.35286 -11.23055 -10.98237 -10.71643 -10.68354 -10.43175 -10.15696 -10.06898 -9.85448 -9.81443 -9.41756 -9.08065 -8.45360 -8.39046 -7.03424 -6.04574 -4.09577 1.66214 2.02320 3.27677 3.35824 3.39040 3.55736 4.25280 4.41689 4.52137 4.59850 4.82590 5.05960 5.07980 5.18823 5.25245 5.27817 5.35505 5.41798 5.48128 5.56002 5.66402 5.78215 5.80882 5.94110 6.01003 6.06710 6.08874 6.15303 6.29964 6.35951 6.52981 6.71211 6.84780 7.08839 7.39884 7.58859 7.84461 8.10966 8.20100 8.25235 8.91629 9.03216 9.54333 11.01640 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.005291 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.223097 B = 5291.106382 C = 5964.138061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.064 4.064 4 C 0.192 3.808 5 C -0.306 4.306 6 C 0.452 3.548 7 N -0.549 5.549 8 C 0.249 3.751 9 C -0.514 4.514 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.894 3.106 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.080 3.920 18 C -0.177 4.177 19 C -0.191 4.191 20 N -0.555 5.555 21 C 0.332 3.668 22 N -0.581 5.581 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.046 0.954 32 H 0.036 0.964 33 H 0.262 0.738 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.520 -1.028 -1.024 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.103 4.103 4 C 0.050 3.950 5 C -0.335 4.335 6 C 0.208 3.792 7 N -0.255 5.255 8 C 0.131 3.869 9 C -0.553 4.553 10 H 0.074 0.926 11 C -0.139 4.139 12 N -0.534 5.534 13 Si 0.722 3.278 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.211 1.211 17 C -0.026 4.026 18 C -0.215 4.215 19 C -0.230 4.230 20 N -0.278 5.278 21 C 0.041 3.959 22 N -0.302 5.302 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -14.709 -1.473 -0.556 14.793 hybrid contribution 0.373 1.228 -0.012 1.283 sum -14.336 -0.245 -0.568 14.350 Atomic orbital electron populations 1.21787 0.95964 1.01497 1.01611 1.21401 0.95064 0.95843 1.02931 1.20513 0.88817 0.98162 1.02763 1.21096 0.96112 0.89151 0.88660 1.21893 0.94052 1.11911 1.05628 1.18488 0.87423 0.86820 0.86508 1.46553 1.08986 1.41364 1.28583 1.19423 0.71673 0.98452 0.97388 1.21398 0.91232 1.15993 1.26704 0.92575 1.24891 0.97279 0.95955 0.95819 1.69933 1.06190 1.35568 1.41750 0.86503 0.79487 0.81237 0.80554 1.19941 1.20911 1.21067 1.21435 0.96399 0.89305 0.95499 1.23323 1.01827 1.03268 0.93034 1.23464 1.03761 0.93843 1.01970 1.68172 1.40843 1.14008 1.04782 1.24573 0.86362 0.91159 0.93771 1.68107 1.10153 1.24642 1.27330 0.92825 0.92739 0.92924 0.92323 0.90704 0.90131 0.90700 0.85222 0.93588 0.94610 0.92832 0.86837 0.86668 0.88908 0.89404 0.87276 0.79777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.11 -1.26 5.80 -26.73 -0.16 -1.41 16 3 C -0.06 -0.77 5.64 -27.88 -0.16 -0.93 16 4 C 0.19 3.10 6.20 -82.33 -0.51 2.59 16 5 C -0.31 -5.29 9.03 -39.11 -0.35 -5.64 16 6 C 0.45 9.45 7.35 -154.78 -1.14 8.31 16 7 N -0.55 -11.70 2.89 -167.43 -0.48 -12.18 16 8 C 0.25 6.29 4.67 -5.19 -0.02 6.26 16 9 C -0.51 -14.00 8.71 -34.44 -0.30 -14.30 16 10 H 0.06 1.58 7.21 -52.49 -0.38 1.20 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 13 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.08 1.37 5.98 -67.92 -0.41 0.96 16 18 C -0.18 -2.88 9.74 -26.69 -0.26 -3.14 16 19 C -0.19 -3.16 10.28 -26.69 -0.27 -3.44 16 20 N -0.55 -12.22 9.38 -13.81 -0.13 -12.35 16 21 C 0.33 6.19 12.28 -92.20 -1.13 5.05 16 22 N -0.58 -10.15 10.03 -10.88 -0.11 -10.26 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.91 7.98 -51.93 -0.41 0.49 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.77 7.93 -51.93 -0.41 0.35 16 30 H 0.13 1.91 6.19 -52.48 -0.32 1.58 16 31 H 0.05 1.30 7.56 -51.93 -0.39 0.91 16 32 H 0.04 0.92 5.99 -51.93 -0.31 0.61 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.11 1.63 6.46 -51.93 -0.34 1.29 16 35 H 0.12 2.23 6.11 -51.93 -0.32 1.91 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.11 2.15 6.94 -51.93 -0.36 1.79 16 39 H 0.19 2.86 8.06 -52.49 -0.42 2.43 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -30.39 323.25 -10.34 -40.73 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.76 Total: 2.69 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -4.44 Total: -4.97 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.01 Total: -59.92 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.39 -10.34 -40.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.713 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds