Wall clock time and date at job start Mon Mar 30 2020 07:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46887 * 2 1 4 4 C 1.50705 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.38105 * 120.40258 * 125.00025 * 4 3 2 6 6 C 1.39627 * 118.33396 * 180.02562 * 5 4 3 7 7 N 1.38543 * 120.53158 * 179.97438 * 6 5 4 8 8 C 1.46504 * 119.99907 * 189.05057 * 7 6 5 9 9 C 1.50694 * 109.47208 * 270.27272 * 8 7 6 10 10 H 1.08002 * 120.00359 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99911 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99823 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99938 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47241 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46673 * 120.00148 * 13 11 9 16 16 H 1.48497 * 109.47338 * 240.00162 * 13 11 9 17 17 C 1.46499 * 119.99870 * 9.32789 * 7 6 5 18 18 C 1.53010 * 117.49823 * 182.50419 * 17 7 6 19 19 C 1.53008 * 117.50063 * 113.84844 * 17 7 6 20 20 N 1.32988 * 118.93748 * 0.24172 * 6 5 4 21 21 C 1.31757 * 120.68504 * 359.49668 * 20 6 5 22 22 N 1.31782 * 121.82865 * 0.52631 * 21 20 6 23 23 H 1.09001 * 109.47263 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47747 * 300.00611 * 1 2 3 25 25 H 1.09006 * 109.46911 * 60.00206 * 1 2 3 26 26 H 1.08997 * 109.47526 * 239.99891 * 2 1 3 27 27 H 1.08998 * 109.46933 * 119.99127 * 2 1 3 28 28 H 1.08997 * 109.47127 * 59.99646 * 3 2 1 29 29 H 1.08996 * 109.47082 * 299.99555 * 3 2 1 30 30 H 1.08004 * 120.83414 * 359.97438 * 5 4 3 31 31 H 1.08998 * 109.46754 * 30.27873 * 8 7 6 32 32 H 1.09000 * 109.46589 * 150.27769 * 8 7 6 33 33 H 0.96998 * 119.99366 * 179.97438 * 12 11 9 34 34 H 1.09001 * 115.55341 * 328.16998 * 17 7 6 35 35 H 1.08997 * 117.49461 * 359.97438 * 18 17 7 36 36 H 1.08996 * 117.49604 * 145.02080 * 18 17 7 37 37 H 1.08996 * 117.49884 * 214.97975 * 19 17 7 38 38 H 1.08998 * 117.49562 * 359.97438 * 19 17 7 39 39 H 1.07995 * 119.08331 * 180.26054 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2463 2.1257 -0.9749 6 6 5.6416 2.0963 -0.9333 7 7 6.3884 2.7652 -1.8895 8 6 7.8386 2.5680 -1.9561 9 6 8.5239 3.5766 -1.0708 10 1 7.9380 4.2927 -0.5137 11 6 9.8991 3.5846 -0.9710 12 7 10.6126 2.7123 -1.6489 13 14 10.7486 4.8344 0.1272 14 1 9.7289 5.6967 0.7768 15 1 11.5331 4.1251 1.1695 16 1 11.6591 5.6747 -0.6914 17 6 5.7288 3.6744 -2.8300 18 6 6.5991 4.3379 -3.8994 19 6 6.0645 5.1636 -2.7265 20 7 6.2423 1.4116 0.0357 21 6 5.5350 0.7782 0.9493 22 7 4.2173 0.7866 0.9373 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 1.6765 1.9564 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.7269 2.6683 -1.7510 31 1 8.0842 1.5613 -1.6181 32 1 8.1761 2.6985 -2.9844 33 1 11.5801 2.7183 -1.5789 34 1 4.7090 3.4064 -3.1062 35 1 7.6624 4.0983 -3.9028 36 1 6.1516 4.5068 -4.8788 37 1 5.2657 5.8752 -2.9348 38 1 6.7758 5.4668 -1.9583 39 1 6.0496 0.2336 1.7270 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:55 Heat of formation + Delta-G solvation = 54.462696 kcal Electronic energy + Delta-G solvation = -19423.561870 eV Core-core repulsion = 16559.280151 eV Total energy + Delta-G solvation = -2864.281719 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.78593 -39.29374 -36.59005 -35.41642 -34.69123 -33.10234 -31.94158 -29.34727 -27.83685 -25.42870 -25.01247 -23.40450 -23.15177 -22.24600 -20.86122 -18.64727 -18.60861 -18.21381 -16.68345 -16.37974 -16.24408 -16.01509 -15.58823 -15.46051 -14.89011 -14.60410 -14.57014 -13.91024 -13.62048 -13.34937 -13.32759 -12.94705 -12.74372 -12.54855 -12.32290 -12.12264 -12.05828 -12.00108 -11.61209 -11.47215 -11.38606 -11.18961 -11.17140 -10.60234 -10.46910 -9.87766 -8.67117 -8.12793 -6.30500 0.27753 0.56845 1.33406 1.35791 1.46404 2.05278 2.38552 2.91464 3.10573 3.15230 3.35336 3.55354 3.82079 3.92432 4.06493 4.15576 4.19756 4.25360 4.31944 4.55885 4.64415 4.74547 4.79516 4.83623 4.90175 4.95364 5.06718 5.08812 5.13517 5.24742 5.28425 5.40416 5.43243 5.54120 5.62366 5.70532 5.99637 6.10877 6.43269 6.72836 6.80200 7.36715 7.56862 8.87357 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.005291 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.223097 B = 5291.106382 C = 5964.138061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.061 4.061 4 C 0.191 3.809 5 C -0.298 4.298 6 C 0.424 3.576 7 N -0.564 5.564 8 C 0.272 3.728 9 C -0.515 4.515 10 H 0.042 0.958 11 C 0.013 3.987 12 N -0.927 5.927 13 Si 0.956 3.044 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.273 1.273 17 C 0.069 3.931 18 C -0.173 4.173 19 C -0.187 4.187 20 N -0.604 5.604 21 C 0.322 3.678 22 N -0.579 5.579 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.161 0.839 31 H 0.006 0.994 32 H 0.024 0.976 33 H 0.265 0.735 34 H 0.153 0.847 35 H 0.075 0.925 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.069 0.931 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.328 0.058 -1.283 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.098 4.098 4 C 0.048 3.952 5 C -0.327 4.327 6 C 0.182 3.818 7 N -0.271 5.271 8 C 0.151 3.849 9 C -0.554 4.554 10 H 0.061 0.939 11 C -0.186 4.186 12 N -0.568 5.568 13 Si 0.782 3.218 14 H -0.199 1.199 15 H -0.207 1.207 16 H -0.198 1.198 17 C -0.035 4.035 18 C -0.210 4.210 19 C -0.225 4.225 20 N -0.328 5.328 21 C 0.033 3.967 22 N -0.300 5.300 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.179 0.821 31 H 0.024 0.976 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.170 0.830 35 H 0.093 0.907 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.087 0.913 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -17.557 -0.386 -0.809 17.580 hybrid contribution 1.169 0.829 0.103 1.437 sum -16.388 0.444 -0.705 16.409 Atomic orbital electron populations 1.21741 0.93784 1.02235 1.02549 1.21357 0.96884 0.94913 1.01774 1.20669 0.85431 0.99150 1.04585 1.21866 0.98255 0.87571 0.87481 1.22156 0.92276 1.11736 1.06498 1.18909 0.89026 0.87341 0.86532 1.46434 1.07503 1.43023 1.30156 1.18791 0.74690 0.95593 0.95859 1.21517 0.91495 1.15839 1.26519 0.93949 1.25665 0.98029 0.97746 0.97144 1.70036 1.06490 1.37104 1.43120 0.85535 0.78381 0.79039 0.78837 1.19883 1.20700 1.19841 1.21895 0.97826 0.88840 0.94987 1.23306 0.99801 1.02944 0.94953 1.23429 1.03975 0.94329 1.00807 1.68113 1.42826 1.15608 1.06293 1.24987 0.87061 0.91020 0.93662 1.68224 1.09487 1.24565 1.27744 0.92288 0.92064 0.91700 0.93109 0.92341 0.88992 0.88074 0.82112 0.97643 0.95826 0.92630 0.83005 0.90655 0.84767 0.85315 0.91277 0.77887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.30 16 2 C -0.11 -2.15 5.80 30.59 0.18 -1.98 16 3 C -0.06 -1.24 5.64 29.85 0.17 -1.07 16 4 C 0.19 5.76 6.20 42.42 0.26 6.02 16 5 C -0.30 -9.74 9.03 22.57 0.20 -9.54 16 6 C 0.42 17.87 7.35 133.16 0.98 18.85 16 7 N -0.56 -24.45 2.89 -683.63 -1.97 -26.43 16 8 C 0.27 14.41 4.67 85.63 0.40 14.81 16 9 C -0.51 -29.17 8.71 25.60 0.22 -28.95 16 10 H 0.04 2.47 7.21 -2.91 -0.02 2.45 16 11 C 0.01 0.73 5.46 84.66 0.46 1.19 16 12 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 13 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 14 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 15 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 17 C 0.07 2.27 5.98 45.00 0.27 2.54 16 18 C -0.17 -5.44 9.74 30.62 0.30 -5.14 16 19 C -0.19 -5.89 10.28 30.62 0.31 -5.58 16 20 N -0.60 -27.43 9.38 -197.62 -1.85 -29.29 16 21 C 0.32 12.17 12.28 180.90 2.22 14.39 16 22 N -0.58 -19.74 10.03 -188.34 -1.89 -21.63 16 23 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.32 7.98 -2.39 -0.02 1.30 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 1.58 7.93 -2.39 -0.02 1.56 16 30 H 0.16 4.09 6.19 -2.91 -0.02 4.08 16 31 H 0.01 0.33 7.56 -2.39 -0.02 0.31 16 32 H 0.02 1.30 5.99 -2.39 -0.01 1.29 16 33 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.15 3.77 6.46 -2.39 -0.02 3.75 16 35 H 0.07 3.02 6.11 -2.39 -0.01 3.00 16 36 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.07 2.77 6.94 -2.39 -0.02 2.75 16 39 H 0.20 6.44 8.06 -2.91 -0.02 6.41 16 Total: -1.00 -69.37 323.25 4.32 -65.05 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 1.03 Total: 15.78 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 6.69 Total: 4.25 kcal Atomic # 7 Polarization: -127.02 SS G_CDS: -5.43 Total: -132.46 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -69.37 4.32 -65.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.512 kcal (2) G-P(sol) polarization free energy of solvation -69.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds