Wall clock time and date at job start Mon Mar 30 2020 07:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47483 * 2 1 4 4 C 1.50700 * 109.47087 * 120.00444 * 2 1 3 5 5 C 1.38123 * 120.39793 * 274.99553 * 4 2 1 6 6 C 1.39624 * 118.33197 * 179.97438 * 5 4 2 7 7 N 1.38547 * 120.52882 * 179.97438 * 6 5 4 8 8 C 1.46496 * 119.99515 * 170.99357 * 7 6 5 9 9 C 1.50705 * 109.46946 * 90.00520 * 8 7 6 10 10 H 1.07998 * 119.99927 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00071 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00014 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99977 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47330 * 60.00035 * 13 11 9 15 15 H 1.48500 * 109.47088 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.46909 * 299.99735 * 13 11 9 17 17 C 1.46496 * 119.99961 * 351.00104 * 7 6 5 18 18 C 1.53005 * 117.49568 * 184.64935 * 17 7 6 19 19 C 1.52997 * 117.50030 * 115.99189 * 17 7 6 20 20 N 1.32988 * 118.93599 * 0.02636 * 6 5 4 21 21 C 1.31745 * 120.69195 * 359.95372 * 20 6 5 22 22 N 1.31785 * 121.82881 * 0.04455 * 21 20 6 23 23 H 1.09005 * 109.46934 * 300.00341 * 1 2 3 24 24 H 1.09000 * 109.46970 * 59.99839 * 1 2 3 25 25 H 1.08997 * 109.47289 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46898 * 240.00214 * 2 1 3 27 27 H 1.09005 * 109.46879 * 60.00203 * 3 2 1 28 28 H 1.08997 * 109.47390 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47149 * 300.00051 * 3 2 1 30 30 H 1.08001 * 120.82839 * 359.70909 * 5 4 2 31 31 H 1.09007 * 109.47119 * 209.99896 * 8 7 6 32 32 H 1.08993 * 109.47956 * 330.00398 * 8 7 6 33 33 H 0.96996 * 119.99963 * 180.02562 * 12 11 9 34 34 H 1.09000 * 115.54890 * 330.31627 * 17 7 6 35 35 H 1.09000 * 117.49930 * 359.97438 * 18 17 7 36 36 H 1.09008 * 117.49730 * 145.01816 * 18 17 7 37 37 H 1.09008 * 117.49896 * 214.97620 * 19 17 7 38 38 H 1.08995 * 117.50129 * 359.97438 * 19 17 7 39 39 H 1.08000 * 119.08796 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1675 -0.0295 2.4245 6 6 2.6362 -0.7302 3.5375 7 7 2.7896 -0.0919 4.7576 8 6 3.0907 -0.8728 5.9599 9 6 4.5844 -0.9927 6.1201 10 1 5.2434 -0.5335 5.3982 11 6 5.1096 -1.6886 7.1882 12 7 4.3070 -2.2474 8.0676 13 14 6.9611 -1.8366 7.3871 14 1 7.5551 -0.4815 7.5148 15 1 7.2663 -2.6272 8.6065 16 1 7.5336 -2.5181 6.1985 17 6 2.6506 1.3638 4.8452 18 6 2.9383 2.0207 6.1968 19 6 1.4985 1.9140 5.6883 20 7 2.9340 -2.0198 3.4074 21 6 2.7893 -2.6298 2.2487 22 7 2.3494 -1.9965 1.1800 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.6768 1.9563 0.8901 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.9209 1.0196 2.4943 31 1 2.6707 -0.3726 6.8327 32 1 2.6544 -1.8672 5.8661 33 1 4.6765 -2.7367 8.8192 34 1 2.9265 1.9173 3.9477 35 1 3.2306 1.3698 7.0208 36 1 3.4032 3.0067 6.1884 37 1 1.0166 2.8297 5.3456 38 1 0.8437 1.1929 6.1774 39 1 3.0386 -3.6779 2.1724 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:57 Heat of formation + Delta-G solvation = 72.902573 kcal Electronic energy + Delta-G solvation = -19735.817315 eV Core-core repulsion = 16872.335209 eV Total energy + Delta-G solvation = -2863.482106 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43109 -37.89046 -35.89726 -34.01781 -32.75415 -31.16717 -30.07561 -27.25566 -26.97221 -24.38453 -23.37346 -22.77777 -21.93976 -20.72005 -19.24831 -17.25135 -16.93240 -16.33568 -15.26824 -14.93902 -14.66886 -14.57232 -14.11308 -13.91888 -13.63588 -13.50548 -13.01037 -12.49268 -12.21388 -12.14548 -11.52935 -11.44040 -11.29251 -11.17617 -10.98445 -10.90890 -10.80931 -10.49945 -10.15082 -10.08751 -9.98657 -9.76401 -9.46529 -9.08126 -8.44642 -8.39982 -7.04392 -6.03205 -4.08409 1.66336 2.02060 3.31323 3.35690 3.38546 3.55405 4.21004 4.41879 4.42748 4.58075 4.82038 5.08259 5.15082 5.21106 5.25973 5.28374 5.30885 5.37043 5.45638 5.57150 5.68706 5.78135 5.83217 5.89890 5.93508 6.01750 6.12666 6.16093 6.22993 6.34852 6.38006 6.64251 6.81399 7.07075 7.38834 7.58668 7.85285 8.11166 8.20764 8.25344 8.92590 9.03146 9.55464 11.02995 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.006085 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.844153 B = 4600.543502 C = 5312.713491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 C -0.145 4.145 4 C 0.197 3.803 5 C -0.302 4.302 6 C 0.449 3.551 7 N -0.549 5.549 8 C 0.252 3.748 9 C -0.515 4.515 10 H 0.055 0.945 11 C 0.063 3.937 12 N -0.897 5.897 13 Si 0.896 3.104 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.089 3.911 18 C -0.171 4.171 19 C -0.202 4.202 20 N -0.554 5.554 21 C 0.331 3.669 22 N -0.583 5.583 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.133 0.867 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 7.981 -11.438 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.063 4.063 3 C -0.203 4.203 4 C 0.055 3.945 5 C -0.331 4.331 6 C 0.205 3.795 7 N -0.255 5.255 8 C 0.133 3.867 9 C -0.554 4.554 10 H 0.073 0.927 11 C -0.139 4.139 12 N -0.536 5.536 13 Si 0.724 3.276 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.018 4.018 18 C -0.209 4.209 19 C -0.242 4.242 20 N -0.277 5.277 21 C 0.040 3.960 22 N -0.304 5.304 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.151 0.849 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.278 7.019 -11.079 14.540 hybrid contribution 0.976 0.625 0.410 1.230 sum -5.302 7.644 -10.668 14.155 Atomic orbital electron populations 1.21763 0.93757 1.02248 1.01842 1.19991 0.96054 0.95255 0.94998 1.21885 1.01371 0.95022 1.01993 1.21061 0.90217 0.89768 0.93496 1.21889 1.14358 1.02504 0.94323 1.18509 0.86422 0.88479 0.86062 1.46567 1.68617 1.03976 1.06327 1.19358 0.96417 0.91106 0.79785 1.21311 0.91470 1.33545 1.09050 0.92711 1.24885 0.98036 0.95285 0.95713 1.69913 1.34677 1.35308 1.13697 0.86596 0.85544 0.78056 0.77433 1.20378 1.21245 1.20259 1.21357 1.02867 0.81445 0.96085 1.23373 0.97411 1.01822 0.98267 1.23451 0.92382 1.02761 1.05572 1.68156 1.22530 1.09457 1.27536 1.24568 0.89171 0.99673 0.82557 1.68136 1.19859 1.09588 1.32771 0.92476 0.92164 0.92338 0.89424 0.92122 0.92440 0.92151 0.84942 0.94908 0.93655 0.92721 0.86868 0.86351 0.88707 0.88902 0.88751 0.79756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.18 37.16 0.34 -1.13 16 2 C -0.04 -0.53 3.27 -91.77 -0.30 -0.83 16 3 C -0.15 -1.49 8.64 37.16 0.32 -1.17 16 4 C 0.20 3.21 5.82 -82.33 -0.48 2.73 16 5 C -0.30 -5.21 8.41 -39.11 -0.33 -5.54 16 6 C 0.45 9.42 7.35 -154.77 -1.14 8.28 16 7 N -0.55 -11.72 2.89 -167.44 -0.48 -12.20 16 8 C 0.25 6.39 4.49 -5.19 -0.02 6.36 16 9 C -0.51 -14.20 9.36 -34.44 -0.32 -14.52 16 10 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.03 13.29 55.43 0.74 -25.30 16 13 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.09 1.53 5.69 -67.93 -0.39 1.14 16 18 C -0.17 -2.81 9.71 -26.69 -0.26 -3.07 16 19 C -0.20 -3.00 10.28 -26.70 -0.27 -3.28 16 20 N -0.55 -12.27 9.38 -13.81 -0.13 -12.40 16 21 C 0.33 6.24 12.28 -92.20 -1.13 5.10 16 22 N -0.58 -10.39 10.37 -10.88 -0.11 -10.50 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.13 1.97 4.95 -52.49 -0.26 1.71 16 31 H 0.03 0.85 6.23 -51.93 -0.32 0.53 16 32 H 0.05 1.29 7.56 -51.93 -0.39 0.89 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.11 1.70 7.01 -51.93 -0.36 1.34 16 35 H 0.12 2.34 6.29 -51.93 -0.33 2.02 16 36 H 0.09 1.30 8.14 -51.92 -0.42 0.88 16 37 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.19 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 322.79 15.07 4.86 4.86 Total: -1.00 -30.73 322.79 -10.01 -40.73 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.78 Total: 2.39 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -4.08 Total: -4.28 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.01 Total: -60.41 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.73 -10.01 -40.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.635 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds