Wall clock time and date at job start Mon Mar 30 2020 07:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47483 * 2 1 4 4 C 1.50700 * 109.47087 * 120.00444 * 2 1 3 5 5 C 1.38123 * 120.39793 * 274.99553 * 4 2 1 6 6 C 1.39624 * 118.33197 * 179.97438 * 5 4 2 7 7 N 1.38547 * 120.52882 * 179.97438 * 6 5 4 8 8 C 1.46496 * 119.99515 * 170.99357 * 7 6 5 9 9 C 1.50705 * 109.46946 * 90.00520 * 8 7 6 10 10 H 1.07998 * 119.99927 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00071 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00014 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99977 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47330 * 60.00035 * 13 11 9 15 15 H 1.48500 * 109.47088 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.46909 * 299.99735 * 13 11 9 17 17 C 1.46496 * 119.99961 * 351.00104 * 7 6 5 18 18 C 1.53005 * 117.49568 * 184.64935 * 17 7 6 19 19 C 1.52997 * 117.50030 * 115.99189 * 17 7 6 20 20 N 1.32988 * 118.93599 * 0.02636 * 6 5 4 21 21 C 1.31745 * 120.69195 * 359.95372 * 20 6 5 22 22 N 1.31785 * 121.82881 * 0.04455 * 21 20 6 23 23 H 1.09005 * 109.46934 * 300.00341 * 1 2 3 24 24 H 1.09000 * 109.46970 * 59.99839 * 1 2 3 25 25 H 1.08997 * 109.47289 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46898 * 240.00214 * 2 1 3 27 27 H 1.09005 * 109.46879 * 60.00203 * 3 2 1 28 28 H 1.08997 * 109.47390 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47149 * 300.00051 * 3 2 1 30 30 H 1.08001 * 120.82839 * 359.70909 * 5 4 2 31 31 H 1.09007 * 109.47119 * 209.99896 * 8 7 6 32 32 H 1.08993 * 109.47956 * 330.00398 * 8 7 6 33 33 H 0.96996 * 119.99963 * 180.02562 * 12 11 9 34 34 H 1.09000 * 115.54890 * 330.31627 * 17 7 6 35 35 H 1.09000 * 117.49930 * 359.97438 * 18 17 7 36 36 H 1.09008 * 117.49730 * 145.01816 * 18 17 7 37 37 H 1.09008 * 117.49896 * 214.97620 * 19 17 7 38 38 H 1.08995 * 117.50129 * 359.97438 * 19 17 7 39 39 H 1.08000 * 119.08796 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1675 -0.0295 2.4245 6 6 2.6362 -0.7302 3.5375 7 7 2.7896 -0.0919 4.7576 8 6 3.0907 -0.8728 5.9599 9 6 4.5844 -0.9927 6.1201 10 1 5.2434 -0.5335 5.3982 11 6 5.1096 -1.6886 7.1882 12 7 4.3070 -2.2474 8.0676 13 14 6.9611 -1.8366 7.3871 14 1 7.5551 -0.4815 7.5148 15 1 7.2663 -2.6272 8.6065 16 1 7.5336 -2.5181 6.1985 17 6 2.6506 1.3638 4.8452 18 6 2.9383 2.0207 6.1968 19 6 1.4985 1.9140 5.6883 20 7 2.9340 -2.0198 3.4074 21 6 2.7893 -2.6298 2.2487 22 7 2.3494 -1.9965 1.1800 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.6768 1.9563 0.8901 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.9209 1.0196 2.4943 31 1 2.6707 -0.3726 6.8327 32 1 2.6544 -1.8672 5.8661 33 1 4.6765 -2.7367 8.8192 34 1 2.9265 1.9173 3.9477 35 1 3.2306 1.3698 7.0208 36 1 3.4032 3.0067 6.1884 37 1 1.0166 2.8297 5.3456 38 1 0.8437 1.1929 6.1774 39 1 3.0386 -3.6779 2.1724 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:57 Heat of formation + Delta-G solvation = 56.838277 kcal Electronic energy + Delta-G solvation = -19736.513915 eV Core-core repulsion = 16872.335209 eV Total energy + Delta-G solvation = -2864.178706 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.86156 -39.31948 -37.01906 -35.54306 -34.72017 -32.60458 -31.64636 -28.90337 -27.98734 -25.90416 -24.90546 -24.39389 -23.18675 -21.96073 -20.64833 -18.74902 -18.51409 -18.28280 -16.74410 -16.42248 -16.23176 -15.92048 -15.55961 -15.10593 -14.91943 -14.78485 -14.50028 -13.93155 -13.66354 -13.34987 -13.02821 -12.91828 -12.69051 -12.64172 -12.33224 -12.20701 -12.14439 -12.08673 -11.88598 -11.49592 -11.39005 -11.28697 -11.13444 -10.61047 -10.48751 -9.90745 -8.68004 -8.12378 -6.31152 0.26634 0.55545 1.35733 1.38559 1.46011 2.04366 2.39594 2.90113 3.10513 3.16980 3.24787 3.52526 3.83185 3.88470 4.02962 4.13297 4.16140 4.25031 4.31896 4.49945 4.66731 4.74050 4.79049 4.80491 4.87904 5.00028 5.03488 5.04659 5.08223 5.20591 5.25402 5.35639 5.40335 5.43541 5.60012 5.69386 5.98550 6.10837 6.42077 6.71991 6.79256 7.36437 7.55310 8.87355 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.006085 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.844153 B = 4600.543502 C = 5312.713491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.042 4.042 3 C -0.142 4.142 4 C 0.195 3.805 5 C -0.292 4.292 6 C 0.422 3.578 7 N -0.563 5.563 8 C 0.276 3.724 9 C -0.520 4.520 10 H 0.042 0.958 11 C 0.014 3.986 12 N -0.928 5.928 13 Si 0.959 3.041 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.280 1.280 17 C 0.069 3.931 18 C -0.179 4.179 19 C -0.176 4.176 20 N -0.603 5.603 21 C 0.322 3.678 22 N -0.584 5.584 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.044 0.956 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.161 0.839 31 H 0.020 0.980 32 H 0.004 0.996 33 H 0.265 0.735 34 H 0.142 0.858 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.137 0.863 38 H 0.074 0.926 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 10.265 -13.407 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.061 4.061 3 C -0.199 4.199 4 C 0.053 3.947 5 C -0.320 4.320 6 C 0.180 3.820 7 N -0.270 5.270 8 C 0.155 3.845 9 C -0.559 4.559 10 H 0.060 0.940 11 C -0.185 4.185 12 N -0.568 5.568 13 Si 0.784 3.216 14 H -0.191 1.191 15 H -0.204 1.204 16 H -0.205 1.205 17 C -0.035 4.035 18 C -0.216 4.216 19 C -0.214 4.214 20 N -0.327 5.327 21 C 0.032 3.968 22 N -0.305 5.305 23 H 0.075 0.925 24 H 0.108 0.892 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.178 0.822 31 H 0.038 0.962 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.159 0.841 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.092 0.908 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.494 9.326 -13.079 17.327 hybrid contribution 0.977 -0.108 0.936 1.357 sum -5.517 9.219 -12.143 16.213 Atomic orbital electron populations 1.21752 0.92286 1.01851 1.03287 1.20153 0.97088 0.96116 0.92744 1.21885 1.00835 0.93571 1.03631 1.21861 0.88704 0.89293 0.94874 1.22085 1.13178 1.03577 0.93140 1.18922 0.87491 0.88716 0.86871 1.46439 1.69795 1.05491 1.05304 1.18695 0.94821 0.89631 0.81328 1.21465 0.92495 1.33291 1.08653 0.93979 1.25681 1.02486 0.94926 0.95422 1.70026 1.36560 1.36015 1.14223 0.85606 0.80193 0.78497 0.77309 1.19126 1.20401 1.20528 1.21779 1.04973 0.79326 0.97470 1.23331 0.99370 1.02403 0.96528 1.23482 0.91166 1.03456 1.03344 1.68103 1.24365 1.10914 1.29348 1.24985 0.89063 1.00635 0.82132 1.68255 1.19604 1.10563 1.32065 0.92512 0.89242 0.93699 0.89144 0.91604 0.93304 0.89436 0.82174 0.96244 0.97793 0.92577 0.84076 0.90578 0.85527 0.84550 0.90756 0.77828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.18 71.98 0.66 -1.77 16 2 C -0.04 -0.90 3.27 -11.54 -0.04 -0.93 16 3 C -0.14 -2.36 8.64 71.98 0.62 -1.73 16 4 C 0.20 6.05 5.82 42.42 0.25 6.29 16 5 C -0.29 -9.66 8.41 22.58 0.19 -9.47 16 6 C 0.42 17.95 7.35 133.16 0.98 18.93 16 7 N -0.56 -24.59 2.89 -683.67 -1.98 -26.57 16 8 C 0.28 14.76 4.49 85.64 0.38 15.14 16 9 C -0.52 -29.75 9.36 25.60 0.24 -29.51 16 10 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 11 C 0.01 0.78 5.46 84.65 0.46 1.24 16 12 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 13 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 17 C 0.07 2.29 5.69 44.99 0.26 2.55 16 18 C -0.18 -5.75 9.71 30.62 0.30 -5.45 16 19 C -0.18 -4.88 10.28 30.62 0.31 -4.56 16 20 N -0.60 -27.69 9.38 -197.62 -1.85 -29.54 16 21 C 0.32 12.35 12.28 180.90 2.22 14.57 16 22 N -0.58 -20.50 10.37 -188.34 -1.95 -22.45 16 23 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.07 1.03 6.57 -2.38 -0.02 1.02 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.16 4.27 4.95 -2.91 -0.01 4.26 16 31 H 0.02 1.08 6.23 -2.38 -0.01 1.07 16 32 H 0.00 0.24 7.56 -2.39 -0.02 0.23 16 33 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.14 3.83 7.01 -2.39 -0.02 3.81 16 35 H 0.08 3.13 6.29 -2.39 -0.02 3.12 16 36 H 0.13 3.19 8.14 -2.38 -0.02 3.17 16 37 H 0.14 2.63 8.14 -2.38 -0.02 2.61 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.21 6.56 8.06 -2.91 -0.02 6.54 16 Total: -1.00 -69.88 322.79 4.40 -65.48 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 1.03 Total: 15.89 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 6.84 Total: 5.28 kcal Atomic # 7 Polarization: -128.45 SS G_CDS: -5.50 Total: -133.95 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -69.88 4.40 -65.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.323 kcal (2) G-P(sol) polarization free energy of solvation -69.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds